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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_006344 | AC006445 | 13470351 | 3 | chr4 | NT_006344 | AC098830 | 13644898 | 3 | 0 | 0 | 1721 | 1721 |
S/G/Y/R/B/O |
NT_006344 | AC098830 | 13644898 | 3 | chr4 | NT_006344 | AC007126 | 13681312 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006344 | AC007126 | 13681312 | 3 | chr4 | NT_006344 | AC095052 | 13898010 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_006344 | AC007126 | 13681312 | 3 |   |   | AC044818 | 13470351 | | 26157 | 0 | 0 | 26157 |
S/G/Y/R/B/O |
NT_006344 | AC095052 | 13898010 | 3 | chr4 | NT_006344 | AC073848 | 13992156 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_006344 | AC095052 | 13898010 | 3 |   |   | AC016109 | 13681312 | | 38608 | 0 | 32133 | 70741 |
S/G/Y/R/B/O |
NT_006344 | AC095052 | 13898010 | 3 |   |   | AC044818 | 13681312 | | 72553 | 0 | 0 | 72553 |
S/G/Y/R/B/O |
NT_006344 | AC095052 | 13898010 | 3 |   |   | AC078954 | 13992156 | | 15584 | 0 | 0 | 15584 |
S/G/Y/R/B/O |
NT_006344 | AC095052 | 13898010 | 3 |   |   | AC080030 | 13992156 | | 52796 | 0 | 0 | 52796 |
S/G/Y/R/B/O |
NT_006344 | AC073848 | 13992156 | 3 | chr4 | NT_006344 | AC092546 | 14153792 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_006344 | AC073848 | 13992156 | 3 |   |   | AC009683 | 13992156 | | 32064 | 0 | 1072 | 33136 |
S/G/Y/R/B/O |
NT_006344 | AC073848 | 13992156 | 3 |   |   | AC016109 | 13992156 | | 63353 | 2868 | 3485 | 69706 |
S/G/Y/R/B/O |
NT_006344 | AC073848 | 13992156 | 3 |   |   | AC044818 | 13992156 | | 46299 | 0 | 0 | 46299 |
S/G/Y/R/B/O |
NT_006344 | AC073848 | 13992156 | 3 |   |   | AC078954 | 13992156 | | 38404 | 0 | 62445 | 100849 |
S/G/Y/R/B/O |
NT_006344 | AC073848 | 13992156 | 3 |   |   | AC080030 | 13992156 | | 87684 | 3985 | 19252 | 110921 |
S/G/Y/R/B/O |
NT_006344 | AC092546 | 14153792 | 3 | chr4 | NT_006344 | AC006296 | 14270773 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC092546 | 14153792 | 3 |   |   | AC009683 | 14270773 | | 92506 | 3229 | 19115 | 114850 |
S/G/Y/R/B/O |
NT_006344 | AC006296 | 14270773 | 3 | chr4 | NT_006344 | AC093846 | 14462703 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_006344 | AC006296 | 14270773 | 3 |   |   | AC009683 | 13992156 | | 24813 | 2911 | 0 | 27724 |
S/G/Y/R/B/O |
NT_006344 | AC093846 | 14462703 | 3 | chr4 | NT_006344 | AC093777 | 14594462 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC093846 | 14462703 | 3 |   |   | AC007705 | 14270773 | | 64989 | 0 | 1108 | 66097 |
S/G/Y/R/B/O |
NT_006344 | AC093777 | 14594462 | 3 | chr4 | NT_006344 | AC114806 | 14709400 | 3 | 0 | 1987 | 0 | 1987 |
S/G/Y/R/B/O |
NT_006344 | AC093777 | 14594462 | 3 |   |   | AC007705 | 14594462 | | 91534 | 0 | 27068 | 118602 |
S/G/Y/R/B/O |
NT_006344 | AC114806 | 14709400 | 3 | chr4 | NT_006344 | AC105289 | 14845521 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC114806 | 14709400 | 3 |   |   | AC134620 | 14845521 | | 23660 | 0 | 21440 | 45100 |
S/G/Y/R/B/O |
NT_006344 | AC105289 | 14845521 | 3 | chr4 | NT_006344 | AC114749 | 14963075 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_006344 | AC105289 | 14845521 | 3 |   |   | AC079010 | 14845521 | | 30674 | 0 | 0 | 30674 |
S/G/Y/R/B/O |
NT_006344 | AC114749 | 14963075 | 3 | chr4 | NT_006344 | AC098829 | 14982393 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_006344 | AC114749 | 14963075 | 3 |   |   | AC079010 | 14709400 | | 21318 | 0 | 0 | 21318 |
S/G/Y/R/B/O |
NT_006344 | AC098829 | 14982393 | 3 | chr4 | NT_006344 | AC110755 | 15157168 | 3 | 0 | 0 | 1746 | 1746 |
S/G/Y/R/B/O |
NT_006344 | AC098829 | 14982393 | 3 |   |   | AC079010 | 14845521 | | 131278 | 0 | 0 | 131278 |
S/G/Y/R/B/O |
NT_006344 | AC110755 | 15157168 | 3 | chr4 | NT_006344 | AC099550 | 15194070 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_006344 | AC099550 | 15194070 | 3 | chr4 | NT_006344 | AC007016 | 15337549 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC099550 | 15194070 | 3 |   |   | AC080071 | 15337549 | | 42654 | 0 | 17203 | 59857 |
S/G/Y/R/B/O |
NT_006344 | AC007016 | 15337549 | 3 | chr4 | NT_006344 | AC116651 | 15508117 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_006344 | AC007016 | 15337549 | 3 |   |   | AC080071 | 15157168 | | 25996 | 0 | 8242 | 34238 |
S/G/Y/R/B/O |
NT_006344 | AC116651 | 15508117 | 3 | chr4 | NT_006344 | AC114744 | 15567184 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_006344 | AC114744 | 15567184 | 3 | chr4 | NT_006344 | AC005798 | 15680696 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC114744 | 15567184 | 3 |   |   | AC006425 | 15680696 | | 91856 | 0 | 17498 | 109354 |
S/G/Y/R/B/O |
NT_006344 | AC005798 | 15680696 | 3 | chr4 | NT_006344 | AC005598 | 15885327 | 3 | 78690 | 0 | 0 | 78690 |
S/G/Y/R/B/O |
NT_006344 | AC005798 | 15680696 | 3 |   |   | AC006425 | 15885327 | | 61139 | 0 | 0 | 61139 |
S/G/Y/R/B/O |
NT_006344 | AC005798 | 15680696 | 3 |   |   | AC092459 | 15885327 | | 67388 | 2164 | 46146 | 115698 |
S/G/Y/R/B/O |
NT_006344 | AC005598 | 15885327 | 3 | chr4 | NT_006344 | AC108063 | 15973248 | 3 | 0 | 1981 | 0 | 1981 |
S/G/Y/R/B/O |
NT_006344 | AC005598 | 15885327 | 3 |   |   | AC092459 | 15680696 | | 72777 | 2165 | 8287 | 83229 |
S/G/Y/R/B/O |
NT_006344 | AC108063 | 15973248 | 3 | chr4 | NT_006344 | AC110088 | 16131830 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC110088 | 16131830 | 3 | chr4 | NT_006344 | AC006427 | 16177956 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC006427 | 16177956 | 3 | chr4 | NT_006344 | AC097515 | 16354480 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC097515 | 16354480 | 3 | chr4 | NT_006344 | AC105353 | 16518453 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC105353 | 16518453 | 3 | chr4 | NT_006344 | AC104656 | 16532535 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_006344 | AC104656 | 16532535 | 3 | chr4 | NT_006344 | AC005690 | 16705882 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC104656 | 16532535 | 3 |   |   | AC025827 | 16705882 | | 156413 | 3617 | 11317 | 171347 |
S/G/Y/R/B/O |
NT_006344 | AC104656 | 16532535 | 3 |   |   | AC060791 | 16705882 | | 61452 | 3746 | 0 | 65198 |
S/G/Y/R/B/O |
NT_006344 | AC005690 | 16705882 | 3 | chr4 | NT_006344 | AC110758 | 16897306 | 3 | 42920 | 0 | 0 | 42920 |
S/G/Y/R/B/O |
NT_006344 | AC005690 | 16705882 | 3 |   |   | AC023057 | 16518453 | | 72772 | 8445 | 43320 | 124537 |
S/G/Y/R/B/O |
NT_006344 | AC005690 | 16705882 | 3 |   |   | AC060791 | 16518453 | | 78069 | 6076 | 6537 | 90682 |
S/G/Y/R/B/O |
NT_006344 | AC005690 | 16705882 | 3 |   |   | AC068854 | 16518453 | | 31308 | 4142 | 0 | 35450 |
S/G/Y/R/B/O |
NT_006344 | AC005690 | 16705882 | 3 |   |   | AC106894 | 16532535 | | 90472 | 0 | 0 | 90472 |
S/G/Y/R/B/O |
NT_006344 | AC005690 | 16705882 | 3 |   |   | AC107388 | 16532535 | | 134433 | 2322 | 33454 | 170209 |
S/G/Y/R/B/O |
NT_006344 | AC110758 | 16897306 | 3 | chr4 | NT_006344 | AC116617 | 17019406 | 3 | 0 | 0 | 1724 | 1724 |
S/G/Y/R/B/O |
NT_006344 | AC110758 | 16897306 | 3 |   |   | AC068854 | 16705882 | | 109179 | 4142 | 0 | 113321 |
S/G/Y/R/B/O |
NT_006344 | AC110758 | 16897306 | 3 |   |   | AC069188 | 16705882 | | 21002 | 0 | 0 | 21002 |
S/G/Y/R/B/O |
NT_006344 | AC110758 | 16897306 | 3 |   |   | AC106894 | 16705882 | | 134832 | 0 | 0 | 134832 |
S/G/Y/R/B/O |
NT_006344 | AC110758 | 16897306 | 3 |   |   | AC107388 | 16705882 | | 23944 | 2322 | 38883 | 65149 |
S/G/Y/R/B/O |
NT_006344 | AC116617 | 17019406 | 3 | chr4 | NT_006344 | AC006231 | 17065428 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006344 | AC116617 | 17019406 | 3 |   |   | AC069188 | 17019406 | | 34084 | 0 | 4687 | 38771 |
S/G/Y/R/B/O |
NT_006344 | AC006231 | 17065428 | 3 | chr4 | NT_006344 | AC074179 | 17266523 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC006231 | 17065428 | 3 |   |   | AC069188 | 16897306 | | 94507 | 4700 | 17571 | 116778 |
S/G/Y/R/B/O |
NT_006344 | AC074179 | 17266523 | 3 | chr4 | NT_006344 | AC093600 | 17310689 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC093600 | 17310689 | 3 | chr4 | NT_006344 | AC006160 | 17474225 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC093600 | 17310689 | 3 |   |   | AC018596 | 17474225 | | 110565 | 2339 | 19182 | 132086 |
S/G/Y/R/B/O |
NT_006344 | AC006160 | 17474225 | 3 | chr4 | NT_006344 | AC005768 | 17651535 | 3 | 10743 | 0 | 0 | 10743 |
S/G/Y/R/B/O |
NT_006344 | AC005768 | 17651535 | 3 | chr4 | NT_006344 | AC079399 | 17831336 | 3 | 0 | 1939 | 0 | 1939 |
S/G/Y/R/B/O |
NT_006344 | AC005768 | 17651535 | 3 |   |   | AC027576 | 17474225 | | 66304 | 7737 | 9747 | 83788 |
S/G/Y/R/B/O |
NT_006344 | AC005768 | 17651535 | 3 |   |   | AC027783 | 17474225 | | 54940 | 4033 | 31607 | 90580 |
S/G/Y/R/B/O |
NT_006344 | AC079399 | 17831336 | 3 | chr4 | NT_006344 | AC106043 | 17998371 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_006344 | AC079399 | 17831336 | 3 |   |   | AC027576 | 17651535 | | 16560 | 0 | 2914 | 19474 |
S/G/Y/R/B/O |
NT_006344 | AC079399 | 17831336 | 3 |   |   | AC027783 | 17651535 | | 28542 | 2464 | 19195 | 50201 |
S/G/Y/R/B/O |
NT_006344 | AC079399 | 17831336 | 3 |   |   | AC084417 | 17651535 | | 88015 | 2173 | 14090 | 104278 |
S/G/Y/R/B/O |
NT_006344 | AC106043 | 17998371 | 3 | chr4 | NT_006344 | AC097516 | 18000365 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC097516 | 18000365 | 3 | chr4 | NT_006344 | AC007102 | 18157429 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006344 | AC007102 | 18157429 | 3 | chr4 | NT_006344 | AC093871 | 18331687 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006344 | AC093871 | 18331687 | 3 | chr4 | NT_006344 | AC025562 | 18497505 | 1 | 0 | 1674 | 0 | 1674 |
S/G/Y/R/B/O |
NT_006344 | AC093871 | 18331687 | 3 |   |   | AC021990 | 18157429 | | 18862 | 1744 | 45675 | 66281 |
S/G/Y/R/B/O |
NT_006344 | AC025562 | 18497505 | 1 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_006344 | AC025562 | 18497505 | 1 |   |   | AC021990 | 18497505 | | 32041 | 4351 | 29051 | 65443 |
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