Chromosome 17 - Clone Overlaps

Chromosome 17 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_024972	NT_037948	NT_035414	NT_010692	NT_037949	NT_010823	NT_035416	NT_010718
NT_037950	NT_030843	NT_037951	NT_024862	NT_037952	NT_037953	NT_037954	NT_010799
NT_035421	NT_024901	NT_010840	NT_010755	NT_010748	NT_035424	NT_010783	NT_033296
NT_035426	NT_035427	NT_035428	NT_010704	NT_035430	NT_010775	NT_035431	NT_010641
NT_035432	NT_037955	NT_035435	NT_010843	NT_010664	NT_024871	NT_035456	NT_010663
NT_037956

NT_010641

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_010641	AC129506	74504336	2	chr17	NT_010641	AC032019	74706735	3	21083	0	0	21083
S/G/Y/R/B/O	NT_010641	AC129506	74504336	2	chr17	NT_035431	AC087301	74256804	3	68665	0	0	68665
S/G/Y/R/B/O	NT_010641	AC129506	74504336	2	chr17	NT_035431	AC124804	74433821	2	59659	0	0	59659
S/G/Y/R/B/O	NT_010641	AC129506	74504336	2	chr17	NT_035431	AC124804	74433821	2	59659	0	0	59659
S/G/Y/R/B/O	NT_010641	AC129506	74504336	2			AC023146	74504336		82963	9413	23978	116354
S/G/Y/R/B/O	NT_010641	AC129506	74504336	2			AC026091	74504336		21251	0	22741	43992
S/G/Y/R/B/O	NT_010641	AC129506	74504336	2			AC092715	74256804		46518	0	30430	76948
S/G/Y/R/B/O	NT_010641	AC032019	74706735	3	chr17	NT_010641	AC125421	74858327	2	0	0	0	0
S/G/Y/R/B/O	NT_010641	AC032019	74706735	3	chr17	NT_010641	AC068868	74958606	1	25903	5585	0	31488
S/G/Y/R/B/O	NT_010641	AC125421	74858327	2	chr17	NT_010641	AC068868	74958606	1	86029	12943	8976	107948
S/G/Y/R/B/O	NT_010641	AC125421	74858327	2			AC022454	74504336		25324	0	80339	105663
S/G/Y/R/B/O	NT_010641	AC125421	74858327	2			AC022454	74504336		25324	0	80339	105663
S/G/Y/R/B/O	NT_010641	AC125421	74858327	2			AC125420	74958606		68184	0	12619	80803
S/G/Y/R/B/O	NT_010641	AC125421	74858327	2			AC125420	74958606		68184	0	12619	80803
S/G/Y/R/B/O	NT_010641	AC068868	74958606	1	chr17	NT_010641	AC102947	74977307	1	0	655	5259	5914
S/G/Y/R/B/O	NT_010641	AC068868	74958606	1	chr17	NT_010641	AC032019	74706735	3	25903	5585	0	31488
S/G/Y/R/B/O	NT_010641	AC068868	74958606	1			AC015965	74958606		14106	35237	19648	68991
S/G/Y/R/B/O	NT_010641	AC068868	74958606	1			AC022454	74958606		112762	15220	14823	142805
S/G/Y/R/B/O	NT_010641	AC068868	74958606	1			AC125420	74977307		124071	16956	9216	150243
S/G/Y/R/B/O	NT_010641	AC102947	74977307	1	chr17	NT_010641	AC021104	75056124	1	28348	0	12566	40914
S/G/Y/R/B/O	NT_010641	AC102947	74977307	1			AC027565	75056124		12821	0	0	12821
S/G/Y/R/B/O	NT_010641	AC102947	74977307	1			AC027565	75056124		12821	0	0	12821
S/G/Y/R/B/O	NT_010641	AC021104	75056124	1	chr17	NT_010641	AC100786	75170528	3	42170	2935	0	45105
S/G/Y/R/B/O	NT_010641	AC100786	75170528	3	chr17	NT_010641	AC103809	75225777	3	0	0	0	0
S/G/Y/R/B/O	NT_010641	AC100786	75170528	3			AC021977	75056124		29919	0	26881	56800
S/G/Y/R/B/O	NT_010641	AC103809	75225777	3	chr17	NT_010641	AC055863	75424541	2	0	0	98990	98990
S/G/Y/R/B/O	NT_010641	AC103809	75225777	3			AC021977	75056124		77698	0	63651	141349
S/G/Y/R/B/O	NT_010641	AC055863	75424541	2	chr17	NT_010641	AC079325	75477726	3	53530	0	0	53530
S/G/Y/R/B/O	NT_010641	AC055863	75424541	2			AC021977	75424541		35823	0	36239	72062
S/G/Y/R/B/O	NT_010641	AC079325	75477726	3	chr17	NT_010641	AC064805	75644754	3	5580	0	0	5580
S/G/Y/R/B/O	NT_010641	AC079325	75477726	3			AC027192	75225777		53960	0	6989	60949
S/G/Y/R/B/O	NT_010641	AC079325	75477726	3			AC069390	75644754		35585	6464	47251	89300
S/G/Y/R/B/O	NT_010641	AC079325	75477726	3			AC087390	75644754		124672	0	351	125023
S/G/Y/R/B/O	NT_010641	AC064805	75644754	3	chr17	NT_010641	AC016888	75732587	2	65646	0	0	65646
S/G/Y/R/B/O	NT_010641	AC064805	75644754	3			AC027192	75732587		71688	12145	1729	85562
S/G/Y/R/B/O	NT_010641	AC064805	75644754	3			AC069390	75732587		20625	1505	40264	62394
S/G/Y/R/B/O	NT_010641	AC064805	75644754	3			AC087390	75477726		76191	4249	0	80440
S/G/Y/R/B/O	NT_010641	AC016888	75732587	2	chr17	NT_010641	AC068874	75841786	1	34873	0	0	34873
S/G/Y/R/B/O	NT_010641	AC016888	75732587	2			AC027192	75477726		45312	12199	1737	59248
S/G/Y/R/B/O	NT_010641	AC016888	75732587	2			AC027192	75477726		45312	12199	1737	59248
S/G/Y/R/B/O	NT_010641	AC016888	75732587	2			AC087390	75841786		50998	4247	2674	57919
S/G/Y/R/B/O	NT_010641	AC016888	75732587	2			AC087390	75841786		50998	4247	2674	57919
S/G/Y/R/B/O	NT_010641	AC068874	75841786	1	chr17	NT_010641	AC087651	75947105	1	79749	0	0	79749
S/G/Y/R/B/O	NT_010641	AC068874	75841786	1			AC024725	75732587		66836	0	10711	77547
S/G/Y/R/B/O	NT_010641	AC068874	75841786	1			AC024725	75732587		66836	0	10711	77547
S/G/Y/R/B/O	NT_010641	AC087651	75947105	1	chr17	NT_010641	AC111186	76025608	2	29968	0	50114	80082
S/G/Y/R/B/O	NT_010641	AC087651	75947105	1			AC024725	75947105		109661	6429	49202	165292
S/G/Y/R/B/O	NT_010641	AC087651	75947105	1			AC024725	75947105		109661	6429	49202	165292
S/G/Y/R/B/O	NT_010641	AC111186	76025608	2	chr17	NT_010641	AC022211	76165515	3	5692	0	0	5692
S/G/Y/R/B/O	NT_010641	AC111186	76025608	2			AC024725	76165515		44221	6430	9114	59765
S/G/Y/R/B/O	NT_010641	AC111186	76025608	2			AC024725	76165515		44221	6430	9114	59765
S/G/Y/R/B/O	NT_010641	AC022211	76165515	3	chr17	NT_010641	AC011933	76356670	2	28010	0	0	28010
S/G/Y/R/B/O	NT_010641	AC022211	76165515	3			AC087391	76356670		28366	24246	44215	96827
S/G/Y/R/B/O	NT_010641	AC011933	76356670	2	chr17	NT_010641	AC100787	76481960	2	77138	0	0	77138
S/G/Y/R/B/O	NT_010641	AC100787	76481960	2	chr17	NT_010641	AC087749	76577566	1	0	0	25690	25690
S/G/Y/R/B/O	NT_010641	AC100787	76481960	2			AC087643	76356670		15837	1606	3894	21337
S/G/Y/R/B/O	NT_010641	AC100787	76481960	2			AC087643	76356670		15837	1606	3894	21337
S/G/Y/R/B/O	NT_010641	AC100787	76481960	2			AC132884	76577566		24870	465	15746	41081
S/G/Y/R/B/O	NT_010641	AC100787	76481960	2			AC132884	76577566		24870	465	15746	41081
S/G/Y/R/B/O	NT_010641	AC087749	76577566	1	chr17	NT_010641	AC087289	76783001	3	10824	0	11423	22247
S/G/Y/R/B/O	NT_010641	AC087749	76577566	1			AC015551	76577566		38088	0	37092	75180
S/G/Y/R/B/O	NT_010641	AC087749	76577566	1			AC015551	76577566		38088	0	37092	75180
S/G/Y/R/B/O	NT_010641	AC087749	76577566	1			AC019214	76577566		144058	0	70026	214084
S/G/Y/R/B/O	NT_010641	AC087749	76577566	1			AC019214	76577566		144058	0	70026	214084
S/G/Y/R/B/O	NT_010641	AC087749	76577566	1			AC087643	76783001		117815	12513	23615	153943
S/G/Y/R/B/O	NT_010641	AC087749	76577566	1			AC087643	76783001		117815	12513	23615	153943
S/G/Y/R/B/O	NT_010641	AC087749	76577566	1			AC132884	76481960		145514	0	0	145514
S/G/Y/R/B/O	NT_010641	AC087749	76577566	1			AC132884	76481960		145514	0	0	145514
S/G/Y/R/B/O	NT_010641	AC087289	76783001	3	chr17	NT_010641	AC040980	76975922	2	0	0	0	0
S/G/Y/R/B/O	NT_010641	AC087289	76783001	3			AC019214	76481960		21131	0	0	21131
S/G/Y/R/B/O	NT_010641	AC087289	76783001	3			AC021162	76481960		86319	18450	50830	155599
S/G/Y/R/B/O	NT_010641	AC040980	76975922	2	chr17	NT_010641	AC015801	77107394	3	20975	0	0	20975
S/G/Y/R/B/O	NT_010641	AC040980	76975922	2			AC018665	77107394		69476	0	1738	71214
S/G/Y/R/B/O	NT_010641	AC040980	76975922	2			AC021162	77107394		18249	0	0	18249
S/G/Y/R/B/O	NT_010641	AC015801	77107394	3	chr17	NT_010641	AC090699	77292745	3	16672	0	0	16672
S/G/Y/R/B/O	NT_010641	AC015801	77107394	3			AC018665	77107394		58999	0	8158	67157
S/G/Y/R/B/O	NT_010641	AC015801	77107394	3			AC021196	77107394		47086	0	7968	55054
S/G/Y/R/B/O	NT_010641	AC015801	77107394	3			AC068145	76975922		28453	1943	2919	33315
S/G/Y/R/B/O	NT_010641	AC090699	77292745	3	chr17	NT_010641	AC015802	77401745	3	12706	0	0	12706
S/G/Y/R/B/O	NT_010641	AC090699	77292745	3			AC021196	77401745		50774	5260	39790	95824
S/G/Y/R/B/O	NT_010641	AC090699	77292745	3			AC021196	77401745		50774	5260	39790	95824
S/G/Y/R/B/O	NT_010641	AC090699	77292745	3			AC068145	77401745		31550	20780	23992	76322
S/G/Y/R/B/O	NT_010641	AC090699	77292745	3			AC068145	77401745		31550	20780	23992	76322
S/G/Y/R/B/O	NT_010641	AC015802	77401745	3	chr17	NT_010641	AC005837	77607498	3	0	0	18716	18716
S/G/Y/R/B/O	NT_010641	AC015802	77401745	3			AC016385	77607498		110594	11897	32774	155265
S/G/Y/R/B/O	NT_010641	AC015802	77401745	3			AC021196	77607498		12660	0	0	12660
S/G/Y/R/B/O	NT_010641	AC015802	77401745	3			AC068145	77607498		11628	9851	7016	28495
S/G/Y/R/B/O	NT_010641	AC005837	77607498	3	chr17	NT_010641	AC027694	77751588	3	0	0	0	0
S/G/Y/R/B/O	NT_010641	AC027694	77751588	3	chr17	NT_010641	AC016168	77823063	3	12242	0	0	12242
S/G/Y/R/B/O	NT_010641	AC027694	77751588	3			AC024720	77823063		22682	4489	15611	42782
S/G/Y/R/B/O	NT_010641	AC027694	77751588	3			AC087296	77823063		28122	0	24471	52593
S/G/Y/R/B/O	NT_010641	AC016168	77823063	3	chr17	NT_010641	AC015815	78004342	1	0	0	0	0
S/G/Y/R/B/O	NT_010641	AC016168	77823063	3			AC024720	77823063		87299	0	0	87299
S/G/Y/R/B/O	NT_010641	AC016168	77823063	3			AC087296	77751588		23306	0	64672	87978
S/G/Y/R/B/O	NT_010641	AC015815	78004342	1	chr17	NT_010641	AC068594	78118924	3	7803	0	5133	12936
S/G/Y/R/B/O	NT_010641	AC015815	78004342	1			AC068169	77751588		12851	0	90845	103696
S/G/Y/R/B/O	NT_010641	AC015815	78004342	1			AC068169	77751588		12851	0	90845	103696
S/G/Y/R/B/O	NT_010641	AC068594	78118924	3	chr17	NT_010641	AC111182	78245345	1	78643	0	0	78643
S/G/Y/R/B/O	NT_010641	AC068594	78118924	3			AC034138	78004342		20847	8790	47170	76807
S/G/Y/R/B/O	NT_010641	AC068594	78118924	3			AC034138	78004342		20847	8790	47170	76807
S/G/Y/R/B/O	NT_010641	AC068594	78118924	3			AC068169	78004342		91566	0	0	91566
S/G/Y/R/B/O	NT_010641	AC068594	78118924	3			AC068169	78004342		91566	0	0	91566
S/G/Y/R/B/O	NT_010641	AC068594	78118924	3			AC132194	78245345		12721	0	0	12721
S/G/Y/R/B/O	NT_010641	AC068594	78118924	3			AC132194	78245345		12721	0	0	12721
S/G/Y/R/B/O	NT_010641	AC111182	78245345	1	chr17	NT_010641	AC111170	78355617	2	37306	0	17511	54817
S/G/Y/R/B/O	NT_010641	AC111182	78245345	1			AC012118	78245345		86906	0	1531	88437
S/G/Y/R/B/O	NT_010641	AC111182	78245345	1			AC012118	78245345		86906	0	1531	88437
S/G/Y/R/B/O	NT_010641	AC111182	78245345	1			AC023287	78245345		67355	0	139	67494
S/G/Y/R/B/O	NT_010641	AC111182	78245345	1			AC023287	78245345		67355	0	139	67494
S/G/Y/R/B/O	NT_010641	AC111182	78245345	1			AC034138	78245345		46351	13262	28772	88385
S/G/Y/R/B/O	NT_010641	AC111182	78245345	1			AC034138	78245345		46351	13262	28772	88385
S/G/Y/R/B/O	NT_010641	AC111182	78245345	1			AC132194	78355617		92422	0	0	92422
S/G/Y/R/B/O	NT_010641	AC111182	78245345	1			AC132194	78355617		92422	0	0	92422
S/G/Y/R/B/O	NT_010641	AC111170	78355617	2	chr17	NT_010641	AC021683	78394533	3	0	0	8338	8338
S/G/Y/R/B/O	NT_010641	AC111170	78355617	2			AC012118	78355617		140139	0	1307	141446
S/G/Y/R/B/O	NT_010641	AC111170	78355617	2			AC023287	78394533		107509	0	0	107509
S/G/Y/R/B/O	NT_010641	AC111170	78355617	2			AC132194	78245345		37320	0	0	37320
S/G/Y/R/B/O	NT_010641	AC021683	78394533	3	chr17	NT_010641	AC104981	78557148	2	45612	0	0	45612
S/G/Y/R/B/O	NT_010641	AC021683	78394533	3			AC012118	78245345		11180	0	0	11180
S/G/Y/R/B/O	NT_010641	AC021683	78394533	3			AC015803	78245345		162598	0	0	162598
S/G/Y/R/B/O	NT_010641	AC021683	78394533	3			AC105191	78557148		35517	1736	0	37253
S/G/Y/R/B/O	NT_010641	AC104981	78557148	2	chr17	NT_010641	AC015804	78801815	3	4582	0	0	4582
S/G/Y/R/B/O	NT_010641	AC104981	78557148	2			AC015803	79385446		77987	0	0	77987
S/G/Y/R/B/O	NT_010641	AC104981	78557148	2			AC097640	78394533		54046	0	14695	68741
S/G/Y/R/B/O	NT_010641	AC104981	78557148	2			AC105191	78394533		130118	2304	0	132422
S/G/Y/R/B/O	NT_010641	AC015804	78801815	3	chr17	NT_010641	AC021593	79002267	3	10072	0	0	10072
S/G/Y/R/B/O	NT_010641	AC015804	78801815	3			AC097640	79002267		49958	0	0	49958
S/G/Y/R/B/O	NT_010641	AC021593	79002267	3	chr17	NT_010641	AC087645	79169933	1	51816	2343	0	54159
S/G/Y/R/B/O	NT_010641	AC087645	79169933	1
S/G/Y/R/B/O	NT_010641	AC087645	79169933	1			AC032035	79002267		16750	0	114445	131195
S/G/Y/R/B/O	NT_010641	AC087645	79169933	1			AC032035	79002267		16750	0	114445	131195