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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_010704 | AC127525 | 65340125 | 3 | chr17 | NT_010704 | AC107377 | 65408384 | 3 | 40574 | 0 | 0 | 40574 |
S/G/Y/R/B/O |
NT_010704 | AC107377 | 65408384 | 3 | chr17 | NT_010704 | AC006534 | 65497232 | 3 | 0 | 0 | 1909 | 1909 |
S/G/Y/R/B/O |
NT_010704 | AC107377 | 65408384 | 3 |   |   | AC023123 | 65497232 | | 17953 | 0 | 0 | 17953 |
S/G/Y/R/B/O |
NT_010704 | AC107377 | 65408384 | 3 |   |   | AC087389 | 65497232 | | 17620 | 0 | 0 | 17620 |
S/G/Y/R/B/O |
NT_010704 | AC107377 | 65408384 | 3 |   |   | AC132868 | 65340125 | | 14471 | 0 | 0 | 14471 |
S/G/Y/R/B/O |
NT_010704 | AC006534 | 65497232 | 3 | chr17 | NT_010704 | AC079331 | 65630825 | 3 | 80997 | 0 | 0 | 80997 |
S/G/Y/R/B/O |
NT_010704 | AC006534 | 65497232 | 3 |   |   | AC023123 | 65340125 | | 27149 | 0 | 118409 | 145558 |
S/G/Y/R/B/O |
NT_010704 | AC006534 | 65497232 | 3 |   |   | AC023123 | 65340125 | | 27149 | 0 | 118409 | 145558 |
S/G/Y/R/B/O |
NT_010704 | AC006534 | 65497232 | 3 |   |   | AC025325 | 65340125 | | 42506 | 0 | 13090 | 55596 |
S/G/Y/R/B/O |
NT_010704 | AC006534 | 65497232 | 3 |   |   | AC025325 | 65340125 | | 42506 | 0 | 13090 | 55596 |
S/G/Y/R/B/O |
NT_010704 | AC006534 | 65497232 | 3 |   |   | AC087389 | 65630825 | | 84072 | 0 | 49395 | 133467 |
S/G/Y/R/B/O |
NT_010704 | AC006534 | 65497232 | 3 |   |   | AC087389 | 65630825 | | 84072 | 0 | 49395 | 133467 |
S/G/Y/R/B/O |
NT_010704 | AC006534 | 65497232 | 3 |   |   | AC132868 | 65408384 | | 30995 | 0 | 22429 | 53424 |
S/G/Y/R/B/O |
NT_010704 | AC006534 | 65497232 | 3 |   |   | AC132868 | 65408384 | | 30995 | 0 | 22429 | 53424 |
S/G/Y/R/B/O |
NT_010704 | AC079331 | 65630825 | 3 | chr17 | NT_010704 | AC110921 | 65813360 | 2 | 2330 | 0 | 0 | 2330 |
S/G/Y/R/B/O |
NT_010704 | AC079331 | 65630825 | 3 | chr17 | NT_010704 | AC011618 | 65862190 | 1 | 54240 | 0 | 14738 | 68978 |
S/G/Y/R/B/O |
NT_010704 | AC079331 | 65630825 | 3 |   |   | AC023123 | 65862190 | | 39539 | 0 | 0 | 39539 |
S/G/Y/R/B/O |
NT_010704 | AC079331 | 65630825 | 3 |   |   | AC025325 | 65862190 | | 108993 | 4794 | 12660 | 126447 |
S/G/Y/R/B/O |
NT_010704 | AC110921 | 65813360 | 2 | chr17 | NT_010704 | AC011618 | 65862190 | 1 | 21262 | 0 | 32741 | 54003 |
S/G/Y/R/B/O |
NT_010704 | AC110921 | 65813360 | 2 | chr17 | NT_010704 | AC116491 | 66057360 | 2 | 26807 | 0 | 0 | 26807 |
S/G/Y/R/B/O |
NT_010704 | AC110921 | 65813360 | 2 | chr17 | NT_010704 | AC116491 | 66057360 | 2 | 26807 | 0 | 0 | 26807 |
S/G/Y/R/B/O |
NT_010704 | AC110921 | 65813360 | 2 |   |   | AC073404 | 65862190 | | 93658 | 4976 | 31108 | 129742 |
S/G/Y/R/B/O |
NT_010704 | AC011618 | 65862190 | 1 | chr17 | NT_010704 | AC116491 | 66057360 | 2 | 5959 | 0 | 0 | 5959 |
S/G/Y/R/B/O |
NT_010704 | AC011618 | 65862190 | 1 | chr17 | NT_010704 | AC079331 | 65630825 | 3 | 54240 | 0 | 14738 | 68978 |
S/G/Y/R/B/O |
NT_010704 | AC011618 | 65862190 | 1 |   |   | AC025325 | 66057360 | | 29250 | 4801 | 16961 | 51012 |
S/G/Y/R/B/O |
NT_010704 | AC011618 | 65862190 | 1 |   |   | AC073404 | 66057360 | | 50562 | 3460 | 30700 | 84722 |
S/G/Y/R/B/O |
NT_010704 | AC116491 | 66057360 | 2 | chr17 | NT_010704 | AC007448 | 66179955 | 1 | 28496 | 0 | 0 | 28496 |
S/G/Y/R/B/O |
NT_010704 | AC116491 | 66057360 | 2 | chr17 | NT_010704 | AC110921 | 65813360 | 2 | 26807 | 0 | 0 | 26807 |
S/G/Y/R/B/O |
NT_010704 | AC116491 | 66057360 | 2 | chr17 | NT_010704 | AC110921 | 65813360 | 2 | 26807 | 0 | 0 | 26807 |
S/G/Y/R/B/O |
NT_010704 | AC116491 | 66057360 | 2 |   |   | AC073404 | 65862190 | | 47379 | 0 | 31772 | 79151 |
S/G/Y/R/B/O |
NT_010704 | AC116491 | 66057360 | 2 |   |   | AC073404 | 65862190 | | 47379 | 0 | 31772 | 79151 |
S/G/Y/R/B/O |
NT_010704 | AC007448 | 66179955 | 1 | chr17 | NT_010704 | AC005544 | 66342932 | 3 | 3738 | 0 | 0 | 3738 |
S/G/Y/R/B/O |
NT_010704 | AC005544 | 66342932 | 3 | chr17 | NT_010704 | AC005988 | 66511977 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_010704 | AC005544 | 66342932 | 3 |   |   | AC027772 | 66179955 | | 32303 | 3693 | 3492 | 39488 |
S/G/Y/R/B/O |
NT_010704 | AC005988 | 66511977 | 3 | chr17 | NT_010704 | AC005918 | 66683103 | 3 | 2003 | 0 | 0 | 2003 |
S/G/Y/R/B/O |
NT_010704 | AC005988 | 66511977 | 3 |   |   | AC027772 | 66683103 | | 61329 | 19296 | 10227 | 90852 |
S/G/Y/R/B/O |
NT_010704 | AC005918 | 66683103 | 3 | chr17 | NT_010704 | AC006947 | 66768176 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_010704 | AC006947 | 66768176 | 3 | chr17 | NT_010704 | AC060796 | 66941950 | 3 | 73003 | 0 | 0 | 73003 |
S/G/Y/R/B/O |
NT_010704 | AC060796 | 66941950 | 3 | chr17 | NT_010704 | AC006263 | 66987557 | 3 | 14269 | 0 | 0 | 14269 |
S/G/Y/R/B/O |
NT_010704 | AC006263 | 66987557 | 3 | chr17 | NT_010704 | AC009452 | 67068016 | 1 | 21708 | 0 | 0 | 21708 |
S/G/Y/R/B/O |
NT_010704 | AC009452 | 67068016 | 1 | chr17 | NT_010704 | AC006120 | 67207477 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010704 | AC006120 | 67207477 | 3 | chr17 | NT_010704 | AC087302 | 67376230 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010704 | AC087302 | 67376230 | 3 | chr17 | NT_010704 | AC007716 | 67445291 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010704 | AC087302 | 67376230 | 3 |   |   | AC015846 | 66987557 | | 97348 | 0 | 0 | 97348 |
S/G/Y/R/B/O |
NT_010704 | AC087302 | 67376230 | 3 |   |   | AC068133 | 66987557 | | 48394 | 0 | 61011 | 109405 |
S/G/Y/R/B/O |
NT_010704 | AC007716 | 67445291 | 3 | chr17 | NT_010704 | AC006440 | 67607100 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010704 | AC006440 | 67607100 | 3 | chr17 | NT_010704 | AC105028 | 67716947 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010704 | AC006440 | 67607100 | 3 |   |   | AC007867 | 66987557 | | 29263 | 1679 | 11851 | 42793 |
S/G/Y/R/B/O |
NT_010704 | AC105028 | 67716947 | 3 | chr17 | NT_010704 | AC004805 | 67809387 | 3 | 66517 | 0 | 0 | 66517 |
S/G/Y/R/B/O |
NT_010704 | AC105028 | 67716947 | 3 |   |   | AC007867 | 67809387 | | 71238 | 0 | 5505 | 76743 |
S/G/Y/R/B/O |
NT_010704 | AC004805 | 67809387 | 3 | chr17 | NT_010704 | AC115994 | 67927045 | 2 | 14670 | 0 | 0 | 14670 |
S/G/Y/R/B/O |
NT_010704 | AC004805 | 67809387 | 3 |   |   | AC007867 | 853487 | | 58764 | 0 | 4238 | 63002 |
S/G/Y/R/B/O |
NT_010704 | AC115994 | 67927045 | 2 | chr17 | NT_010704 | AC006080 | 68055538 | 3 | 13878 | 0 | 0 | 13878 |
S/G/Y/R/B/O |
NT_010704 | AC006080 | 68055538 | 3 | chr17 | NT_010704 | AC060771 | 68246649 | 3 | 0 | 0 | 6128 | 6128 |
S/G/Y/R/B/O |
NT_010704 | AC060771 | 68246649 | 3 | chr17 | NT_010704 | AC015821 | 68379247 | 3 | 46264 | 0 | 0 | 46264 |
S/G/Y/R/B/O |
NT_010704 | AC015821 | 68379247 | 3 | chr17 | NT_010704 | AC037487 | 68493044 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010704 | AC015821 | 68379247 | 3 |   |   | AC069134 | 68246649 | | 19186 | 8374 | 26072 | 53632 |
S/G/Y/R/B/O |
NT_010704 | AC037487 | 68493044 | 3 | chr17 | NT_010704 | AC103810 | 68598518 | 3 | 60654 | 0 | 0 | 60654 |
S/G/Y/R/B/O |
NT_010704 | AC037487 | 68493044 | 3 | chr17 | NT_010748 | AC069007 | 46624478 | 1 | 24966 | 0 | 0 | 24966 |
S/G/Y/R/B/O |
NT_010704 | AC037487 | 68493044 | 3 |   |   | AC069134 | 46624478 | | 53457 | 16803 | 56378 | 126638 |
S/G/Y/R/B/O |
NT_010704 | AC103810 | 68598518 | 3 | chr17 | NT_010704 | AC003663 | 68658196 | 3 | 82572 | 0 | 0 | 82572 |
S/G/Y/R/B/O |
NT_010704 | AC103810 | 68598518 | 3 |   |   | AC069134 | 46624478 | | 18987 | 4503 | 17092 | 40582 |
S/G/Y/R/B/O |
NT_010704 | AC103810 | 68598518 | 3 |   |   | AC069134 | 46624478 | | 18987 | 4503 | 17092 | 40582 |
S/G/Y/R/B/O |
NT_010704 | AC103810 | 68598518 | 3 |   |   | AC132812 | 46624478 | | 20116 | 0 | 0 | 20116 |
S/G/Y/R/B/O |
NT_010704 | AC103810 | 68598518 | 3 |   |   | AC132812 | 46624478 | | 20116 | 0 | 0 | 20116 |
S/G/Y/R/B/O |
NT_010704 | AC103810 | 68598518 | 3 |   |   | AC132812 | 46624478 | | 20116 | 0 | 0 | 20116 |
S/G/Y/R/B/O |
NT_010704 | AC103810 | 68598518 | 3 |   |   | AC132812 | 46624478 | | 20116 | 0 | 0 | 20116 |
S/G/Y/R/B/O |
NT_010704 | AC003663 | 68658196 | 3 | chr17 | NT_010704 | AC067818 | 68790266 | 1 | 11786 | 589 | 8314 | 20689 |
S/G/Y/R/B/O |
NT_010704 | AC003663 | 68658196 | 3 |   |   | AC132812 | 68598518 | | 67577 | 2053 | 0 | 69630 |
S/G/Y/R/B/O |
NT_010704 | AC003663 | 68658196 | 3 |   |   | AC132812 | 68598518 | | 67577 | 2053 | 0 | 69630 |
S/G/Y/R/B/O |
NT_010704 | AC067818 | 68790266 | 1 | chr17 | NT_010704 | AC009994 | 68829315 | 3 | 0 | 0 | 66453 | 66453 |
S/G/Y/R/B/O |
NT_010704 | AC067818 | 68790266 | 1 |   |   | AC132812 | 68598518 | | 102831 | 0 | 8578 | 111409 |
S/G/Y/R/B/O |
NT_010704 | AC067818 | 68790266 | 1 |   |   | AC132812 | 68598518 | | 102831 | 0 | 8578 | 111409 |
S/G/Y/R/B/O |
NT_010704 | AC067818 | 68790266 | 1 |   |   | AL137126 | 68598518 | | 14275 | 8891 | 29402 | 52568 |
S/G/Y/R/B/O |
NT_010704 | AC009994 | 68829315 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_010704 | AC009994 | 68829315 | 3 |   |   | AL137126 | 68790266 | | 23953 | 5043 | 16973 | 45969 |
S/G/Y/R/B/O |
NT_010704 | AC009994 | 68829315 | 3 |   |   | AL137126 | 68790266 | | 23953 | 5043 | 16973 | 45969 |
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