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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_035428 | AC080038 | 63001850 | 3 | chr17 | NT_035428 | AC005821 | 63220972 | 3 | 84780 | 0 | 0 | 84780 |
S/G/Y/R/B/O |
NT_035428 | AC080038 | 63001850 | 3 |   |   | AC018636 | 63220972 | | 64853 | 0 | 0 | 64853 |
S/G/Y/R/B/O |
NT_035428 | AC080038 | 63001850 | 3 |   |   | AC068401 | 63220972 | | 87278 | 3862 | 4401 | 95541 |
S/G/Y/R/B/O |
NT_035428 | AC005821 | 63220972 | 3 | chr17 | NT_035428 | AC068512 | 63310511 | 3 | 9740 | 0 | 0 | 9740 |
S/G/Y/R/B/O |
NT_035428 | AC005821 | 63220972 | 3 |   |   | AC068401 | 63220972 | | 96082 | 13634 | 17806 | 127522 |
S/G/Y/R/B/O |
NT_035428 | AC068512 | 63310511 | 3 | chr17 | NT_035428 | AC005972 | 63354135 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035428 | AC005972 | 63354135 | 3 | chr17 | NT_035428 | AC037445 | 63518673 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_035428 | AC037445 | 63518673 | 3 | chr17 | NT_035428 | AC006270 | 63539492 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035428 | AC006270 | 63539492 | 3 | chr17 | NT_035428 | AC015923 | 63717420 | 3 | 22276 | 0 | 0 | 22276 |
S/G/Y/R/B/O |
NT_035428 | AC006270 | 63539492 | 3 |   |   | AC021872 | 63717420 | | 31623 | 0 | 0 | 31623 |
S/G/Y/R/B/O |
NT_035428 | AC006270 | 63539492 | 3 |   |   | AC068285 | 63717420 | | 100644 | 1658 | 0 | 102302 |
S/G/Y/R/B/O |
NT_035428 | AC006270 | 63539492 | 3 |   |   | AC079056 | 63717420 | | 79060 | 1661 | 0 | 80721 |
S/G/Y/R/B/O |
NT_035428 | AC015923 | 63717420 | 3 | chr17 | NT_035428 | AC005828 | 63804916 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035428 | AC015923 | 63717420 | 3 |   |   | AC079056 | 63539492 | | 66433 | 0 | 0 | 66433 |
S/G/Y/R/B/O |
NT_035428 | AC005828 | 63804916 | 3 | chr17 | NT_035428 | AC113554 | 63964487 | 3 | 0 | 0 | 34248 | 34248 |
S/G/Y/R/B/O |
NT_035428 | AC005828 | 63804916 | 3 |   |   | AC002345 | 63539492 | | 65583 | 0 | 4215 | 69798 |
S/G/Y/R/B/O |
NT_035428 | AC005828 | 63804916 | 3 |   |   | AC002345 | 63539492 | | 65583 | 0 | 4215 | 69798 |
S/G/Y/R/B/O |
NT_035428 | AC005828 | 63804916 | 3 |   |   | AC021872 | 63539492 | | 48954 | 0 | 0 | 48954 |
S/G/Y/R/B/O |
NT_035428 | AC113554 | 63964487 | 3 | chr17 | NT_035428 | AC046185 | 64109508 | 3 | 49748 | 0 | 0 | 49748 |
S/G/Y/R/B/O |
NT_035428 | AC113554 | 63964487 | 3 |   |   | AC002345 | 63964487 | | 96200 | 0 | 9420 | 105620 |
S/G/Y/R/B/O |
NT_035428 | AC113554 | 63964487 | 3 |   |   | AC002345 | 63964487 | | 96200 | 0 | 9420 | 105620 |
S/G/Y/R/B/O |
NT_035428 | AC113554 | 63964487 | 3 |   |   | AC002345 | 63964487 | | 96200 | 0 | 9420 | 105620 |
S/G/Y/R/B/O |
NT_035428 | AC113554 | 63964487 | 3 |   |   | AC002345 | 63964487 | | 96200 | 0 | 9420 | 105620 |
S/G/Y/R/B/O |
NT_035428 | AC046185 | 64109508 | 3 | chr17 | NT_035428 | AC015651 | 64233385 | 3 | 47000 | 0 | 0 | 47000 |
S/G/Y/R/B/O |
NT_035428 | AC046185 | 64109508 | 3 |   |   | AC018571 | 64233385 | | 60483 | 2737 | 1378 | 64598 |
S/G/Y/R/B/O |
NT_035428 | AC015651 | 64233385 | 3 | chr17 | NT_035428 | AC040958 | 64377932 | 1 | 23933 | 0 | 80900 | 104833 |
S/G/Y/R/B/O |
NT_035428 | AC015651 | 64233385 | 3 |   |   | AC018571 | 63964487 | | 104157 | 7225 | 6420 | 117802 |
S/G/Y/R/B/O |
NT_035428 | AC015651 | 64233385 | 3 |   |   | AC084858 | 64109508 | | 71093 | 0 | 4794 | 75887 |
S/G/Y/R/B/O |
NT_035428 | AC040958 | 64377932 | 1 | chr17 | NT_035428 | AC127029 | 64395397 | 2 | 33321 | 2268 | 4192 | 39781 |
S/G/Y/R/B/O |
NT_035428 | AC040958 | 64377932 | 1 |   |   | AC018571 | 64233385 | | 35549 | 4791 | 0 | 40340 |
S/G/Y/R/B/O |
NT_035428 | AC040958 | 64377932 | 1 |   |   | AC018571 | 64233385 | | 35549 | 4791 | 0 | 40340 |
S/G/Y/R/B/O |
NT_035428 | AC040958 | 64377932 | 1 |   |   | AC084858 | 64233385 | | 98496 | 1624 | 22306 | 122426 |
S/G/Y/R/B/O |
NT_035428 | AC040958 | 64377932 | 1 |   |   | AC084858 | 64233385 | | 98496 | 1624 | 22306 | 122426 |
S/G/Y/R/B/O |
NT_035428 | AC127029 | 64395397 | 2 | chr17 | NT_035428 | AC005803 | 64423142 | 3 | 73401 | 0 | 0 | 73401 |
S/G/Y/R/B/O |
NT_035428 | AC127029 | 64395397 | 2 |   |   | AC084858 | 64377932 | | 40873 | 5531 | 11271 | 57675 |
S/G/Y/R/B/O |
NT_035428 | AC005803 | 64423142 | 3 | chr17 | NT_035428 | AC025362 | 64585615 | 3 | 40225 | 0 | 0 | 40225 |
S/G/Y/R/B/O |
NT_035428 | AC005803 | 64423142 | 3 |   |   | AC084858 | 64377932 | | 24256 | 0 | 0 | 24256 |
S/G/Y/R/B/O |
NT_035428 | AC025362 | 64585615 | 3 | chr17 | NT_035428 | AC016489 | 64699979 | 1 | 41938 | 0 | 0 | 41938 |
S/G/Y/R/B/O |
NT_035428 | AC025362 | 64585615 | 3 |   |   | AC073299 | 64699979 | | 24266 | 0 | 0 | 24266 |
S/G/Y/R/B/O |
NT_035428 | AC025362 | 64585615 | 3 |   |   | AC087697 | 64699979 | | 37622 | 0 | 1274 | 38896 |
S/G/Y/R/B/O |
NT_035428 | AC025362 | 64585615 | 3 |   |   | AC087697 | 64699979 | | 37622 | 0 | 1274 | 38896 |
S/G/Y/R/B/O |
NT_035428 | AC016489 | 64699979 | 1 | chr17 | NT_035428 | AC129531 | 64707503 | 2 | 100203 | 0 | 19307 | 119510 |
S/G/Y/R/B/O |
NT_035428 | AC016489 | 64699979 | 1 |   |   | AC073299 | 64585615 | | 61258 | 0 | 50562 | 111820 |
S/G/Y/R/B/O |
NT_035428 | AC016489 | 64699979 | 1 |   |   | AC087697 | 64585615 | | 126182 | 2842 | 7432 | 136456 |
S/G/Y/R/B/O |
NT_035428 | AC016489 | 64699979 | 1 |   |   | AC087697 | 64585615 | | 126182 | 2842 | 7432 | 136456 |
S/G/Y/R/B/O |
NT_035428 | AC016489 | 64699979 | 1 |   |   | AC129920 | 64707503 | | 85347 | 748 | 19030 | 105125 |
S/G/Y/R/B/O |
NT_035428 | AC129531 | 64707503 | 2 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_035428 | AC129531 | 64707503 | 2 |   |   | AC073299 | 64699979 | | 48774 | 0 | 45681 | 94455 |
S/G/Y/R/B/O |
NT_035428 | AC129531 | 64707503 | 2 |   |   | AC073299 | 64699979 | | 48774 | 0 | 45681 | 94455 |
S/G/Y/R/B/O |
NT_035428 | AC129531 | 64707503 | 2 |   |   | AC087697 | 64699979 | | 57297 | 2182 | 24149 | 83628 |
S/G/Y/R/B/O |
NT_035428 | AC129531 | 64707503 | 2 |   |   | AC087697 | 64699979 | | 57297 | 2182 | 24149 | 83628 |
S/G/Y/R/B/O |
NT_035428 | AC129531 | 64707503 | 2 |   |   | AC087697 | 64699979 | | 57297 | 2182 | 24149 | 83628 |
S/G/Y/R/B/O |
NT_035428 | AC129531 | 64707503 | 2 |   |   | AC087697 | 64699979 | | 57297 | 2182 | 24149 | 83628 |
S/G/Y/R/B/O |
NT_035428 | AC129531 | 64707503 | 2 |   |   | AC124249 | 64699979 | | 37642 | 0 | 0 | 37642 |
S/G/Y/R/B/O |
NT_035428 | AC129531 | 64707503 | 2 |   |   | AC124249 | 64699979 | | 37642 | 0 | 0 | 37642 |
S/G/Y/R/B/O |
NT_035428 | AC129531 | 64707503 | 2 |   |   | AC129920 | 64699979 | | 86451 | 0 | 29886 | 116337 |
S/G/Y/R/B/O |
NT_035428 | AC129531 | 64707503 | 2 |   |   | AC129920 | 64699979 | | 86451 | 0 | 29886 | 116337 |
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