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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_010840 | AC019349 | 41703574 | 1 | chr17 | NT_010840 | AC131309 | 41805054 | 1 | 40892 | 0 | 0 | 40892 |
S/G/Y/R/B/O |
NT_010840 | AC019349 | 41703574 | 1 | chr17 | NT_010840 | AC130686 | 41805149 | 1 | 115859 | 0 | 0 | 115859 |
S/G/Y/R/B/O |
NT_010840 | AC019349 | 41703574 | 1 |   |   | AC105208 | 41567747 | | 24034 | 0 | 0 | 24034 |
S/G/Y/R/B/O |
NT_010840 | AC019349 | 41703574 | 1 |   |   | AC105208 | 41567747 | | 24034 | 0 | 0 | 24034 |
S/G/Y/R/B/O |
NT_010840 | AC019349 | 41703574 | 1 |   |   | AC127524 | 41567747 | | 124508 | 0 | 0 | 124508 |
S/G/Y/R/B/O |
NT_010840 | AC019349 | 41703574 | 1 |   |   | AC130341 | 41567747 | | 112467 | 0 | 0 | 112467 |
S/G/Y/R/B/O |
NT_010840 | AC019349 | 41703574 | 1 |   |   | AC130375 | 41567747 | | 81981 | 0 | 0 | 81981 |
S/G/Y/R/B/O |
NT_010840 | AC131309 | 41805054 | 1 | chr17 | NT_010840 | AC130686 | 41805149 | 1 | 49547 | 0 | 29276 | 78823 |
S/G/Y/R/B/O |
NT_010840 | AC131309 | 41805054 | 1 | chr17 | NT_010840 | AC109319 | 41924807 | 2 | 40057 | 0 | 59419 | 99476 |
S/G/Y/R/B/O |
NT_010840 | AC131309 | 41805054 | 1 | chr17 | NT_010840 | AC109319 | 41924807 | 2 | 40057 | 0 | 59419 | 99476 |
S/G/Y/R/B/O |
NT_010840 | AC131309 | 41805054 | 1 |   |   | AC105208 | 41703574 | | 30045 | 0 | 16859 | 46904 |
S/G/Y/R/B/O |
NT_010840 | AC131309 | 41805054 | 1 |   |   | AC105208 | 41703574 | | 30045 | 0 | 16859 | 46904 |
S/G/Y/R/B/O |
NT_010840 | AC131309 | 41805054 | 1 |   |   | AC105208 | 41703574 | | 30045 | 0 | 16859 | 46904 |
S/G/Y/R/B/O |
NT_010840 | AC131309 | 41805054 | 1 |   |   | AC105208 | 41703574 | | 30045 | 0 | 16859 | 46904 |
S/G/Y/R/B/O |
NT_010840 | AC131309 | 41805054 | 1 |   |   | AC127524 | 41924807 | | 36640 | 0 | 50240 | 86880 |
S/G/Y/R/B/O |
NT_010840 | AC131309 | 41805054 | 1 |   |   | AC127524 | 41924807 | | 36640 | 0 | 50240 | 86880 |
S/G/Y/R/B/O |
NT_010840 | AC131309 | 41805054 | 1 |   |   | AC130341 | 41924807 | | 94775 | 0 | 43023 | 137798 |
S/G/Y/R/B/O |
NT_010840 | AC131309 | 41805054 | 1 |   |   | AC130341 | 41924807 | | 94775 | 0 | 43023 | 137798 |
S/G/Y/R/B/O |
NT_010840 | AC131309 | 41805054 | 1 |   |   | AC130375 | 41924807 | | 36099 | 0 | 16675 | 52774 |
S/G/Y/R/B/O |
NT_010840 | AC131309 | 41805054 | 1 |   |   | AC130375 | 41924807 | | 36099 | 0 | 16675 | 52774 |
S/G/Y/R/B/O |
NT_010840 | AC130686 | 41805149 | 1 | chr17 | NT_010840 | AC109319 | 41924807 | 2 | 24151 | 0 | 45744 | 69895 |
S/G/Y/R/B/O |
NT_010840 | AC130686 | 41805149 | 1 | chr17 | NT_010840 | AC019349 | 41703574 | 1 | 115859 | 0 | 0 | 115859 |
S/G/Y/R/B/O |
NT_010840 | AC130686 | 41805149 | 1 |   |   | AC105208 | 41703574 | | 29886 | 0 | 33865 | 63751 |
S/G/Y/R/B/O |
NT_010840 | AC130686 | 41805149 | 1 |   |   | AC105208 | 41703574 | | 29886 | 0 | 33865 | 63751 |
S/G/Y/R/B/O |
NT_010840 | AC130686 | 41805149 | 1 |   |   | AC127524 | 41924807 | | 64613 | 0 | 98625 | 163238 |
S/G/Y/R/B/O |
NT_010840 | AC130686 | 41805149 | 1 |   |   | AC130341 | 41924807 | | 163775 | 0 | 33353 | 197128 |
S/G/Y/R/B/O |
NT_010840 | AC130686 | 41805149 | 1 |   |   | AC130375 | 41924807 | | 54177 | 0 | 65088 | 119265 |
S/G/Y/R/B/O |
NT_010840 | AC109319 | 41924807 | 2 | chr17 | NT_010840 | AC091172 | 42027021 | 2 | 0 | 0 | 22565 | 22565 |
S/G/Y/R/B/O |
NT_010840 | AC109319 | 41924807 | 2 | chr17 | NT_010840 | AC131309 | 41805054 | 1 | 40057 | 0 | 59419 | 99476 |
S/G/Y/R/B/O |
NT_010840 | AC109319 | 41924807 | 2 | chr17 | NT_010840 | AC131309 | 41805054 | 1 | 40057 | 0 | 59419 | 99476 |
S/G/Y/R/B/O |
NT_010840 | AC109319 | 41924807 | 2 |   |   | AC127524 | 133089335 | | 11776 | 0 | 25345 | 37121 |
S/G/Y/R/B/O |
NT_010840 | AC109319 | 41924807 | 2 |   |   | AC130341 | 133089335 | | 30916 | 0 | 44544 | 75460 |
S/G/Y/R/B/O |
NT_010840 | AC109319 | 41924807 | 2 |   |   | AC130375 | 133089335 | | 14513 | 0 | 21832 | 36345 |
S/G/Y/R/B/O |
NT_010840 | AC091172 | 42027021 | 2 | chr17 | NT_010840 | AC125257 | 42143045 | 3 | 73829 | 1817 | 13248 | 88894 |
S/G/Y/R/B/O |
NT_010840 | AC091172 | 42027021 | 2 |   |   | AC012192 | 41805054 | | 62683 | 4929 | 62623 | 130235 |
S/G/Y/R/B/O |
NT_010840 | AC091172 | 42027021 | 2 |   |   | AC012192 | 41805054 | | 62683 | 4929 | 62623 | 130235 |
S/G/Y/R/B/O |
NT_010840 | AC091172 | 42027021 | 2 |   |   | AC123770 | 41924807 | | 26889 | 8390 | 28880 | 64159 |
S/G/Y/R/B/O |
NT_010840 | AC091172 | 42027021 | 2 |   |   | AC123770 | 41924807 | | 26889 | 8390 | 28880 | 64159 |
S/G/Y/R/B/O |
NT_010840 | AC091172 | 42027021 | 2 |   |   | AC123787 | 41924807 | | 14398 | 1816 | 13682 | 29896 |
S/G/Y/R/B/O |
NT_010840 | AC091172 | 42027021 | 2 |   |   | AC123787 | 41924807 | | 14398 | 1816 | 13682 | 29896 |
S/G/Y/R/B/O |
NT_010840 | AC091172 | 42027021 | 2 |   |   | AC124061 | 41924807 | | 10080 | 1813 | 29970 | 41863 |
S/G/Y/R/B/O |
NT_010840 | AC091172 | 42027021 | 2 |   |   | AC124061 | 41924807 | | 10080 | 1813 | 29970 | 41863 |
S/G/Y/R/B/O |
NT_010840 | AC125257 | 42143045 | 3 | chr17 | NT_010840 | AC105024 | 42302771 | 3 | 16793 | 0 | 0 | 16793 |
S/G/Y/R/B/O |
NT_010840 | AC125257 | 42143045 | 3 |   |   | AC012192 | 42143045 | | 105466 | 1858 | 5228 | 112552 |
S/G/Y/R/B/O |
NT_010840 | AC125257 | 42143045 | 3 |   |   | AC123770 | 42302771 | | 52599 | 5159 | 74969 | 132727 |
S/G/Y/R/B/O |
NT_010840 | AC125257 | 42143045 | 3 |   |   | AC124061 | 42302771 | | 37539 | 0 | 13744 | 51283 |
S/G/Y/R/B/O |
NT_010840 | AC105024 | 42302771 | 3 | chr17 | NT_010840 | AC003104 | 42433627 | 3 | 88112 | 0 | 0 | 88112 |
S/G/Y/R/B/O |
NT_010840 | AC105024 | 42302771 | 3 |   |   | AC123770 | 42433627 | | 48592 | 2217 | 0 | 50809 |
S/G/Y/R/B/O |
NT_010840 | AC105024 | 42302771 | 3 |   |   | AC124061 | 42433627 | | 34441 | 0 | 10263 | 44704 |
S/G/Y/R/B/O |
NT_010840 | AC003104 | 42433627 | 3 | chr17 | NT_010840 | AC099811 | 42446053 | 1 | 10054 | 0 | 0 | 10054 |
S/G/Y/R/B/O |
NT_010840 | AC099811 | 42446053 | 1 | chr17 | NT_010840 | AC087691 | 42474711 | 3 | 0 | 0 | 64028 | 64028 |
S/G/Y/R/B/O |
NT_010840 | AC099811 | 42446053 | 1 |   |   | AC019085 | 42433627 | | 58636 | 15303 | 31391 | 105330 |
S/G/Y/R/B/O |
NT_010840 | AC099811 | 42446053 | 1 |   |   | AC069250 | 42433627 | | 26923 | 0 | 68084 | 95007 |
S/G/Y/R/B/O |
NT_010840 | AC087691 | 42474711 | 3 | chr17 | NT_010840 | AC107993 | 42672509 | 3 | 36630 | 0 | 0 | 36630 |
S/G/Y/R/B/O |
NT_010840 | AC087691 | 42474711 | 3 |   |   | AC019085 | 42474711 | | 44354 | 7706 | 28032 | 80092 |
S/G/Y/R/B/O |
NT_010840 | AC087691 | 42474711 | 3 |   |   | AC069250 | 42474711 | | 92459 | 0 | 50999 | 143458 |
S/G/Y/R/B/O |
NT_010840 | AC107993 | 42672509 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_010840 | AC107993 | 42672509 | 3 |   |   | AC002537 | 42672509 | | 58666 | 0 | 0 | 58666 |
S/G/Y/R/B/O |
NT_010840 | AC107993 | 42672509 | 3 |   |   | AC023121 | 42672509 | | 26501 | 0 | 38363 | 64864 |
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