Chromosome 17 - Clone Overlaps

Chromosome 17 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_024972	NT_037948	NT_035414	NT_010692	NT_037949	NT_010823	NT_035416	NT_010718
NT_037950	NT_030843	NT_037951	NT_024862	NT_037952	NT_037953	NT_037954	NT_010799
NT_035421	NT_024901	NT_010840	NT_010755	NT_010748	NT_035424	NT_010783	NT_033296
NT_035426	NT_035427	NT_035428	NT_010704	NT_035430	NT_010775	NT_035431	NT_010641
NT_035432	NT_037955	NT_035435	NT_010843	NT_010664	NT_024871	NT_035456	NT_010663
NT_037956

NT_030843

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_030843	AC073621	18633943	2	chr17	NT_030843	AC020558	18769701	3	21065	0	0	21065
S/G/Y/R/B/O	NT_030843	AC073621	18633943	2			AC027775	18769701		98656	1761	9097	109514
S/G/Y/R/B/O	NT_030843	AC073621	18633943	2			AC027775	18769701		98656	1761	9097	109514
S/G/Y/R/B/O	NT_030843	AC073621	18633943	2			AC090608	18769701		21061	0	0	21061
S/G/Y/R/B/O	NT_030843	AC073621	18633943	2			AC090608	18769701		21061	0	0	21061
S/G/Y/R/B/O	NT_030843	AC020558	18769701	3	chr17	NT_030843	AC078903	18953035	3	0	0	20374	20374
S/G/Y/R/B/O	NT_030843	AC020558	18769701	3			AC080148	18953035		17971	0	43983	61954
S/G/Y/R/B/O	NT_030843	AC020558	18769701	3			AC090608	18953035		183299	0	0	183299
S/G/Y/R/B/O	NT_030843	AC078903	18953035	3	chr17	NT_030843	AC122129	19027661	2	9792	0	0	9792
S/G/Y/R/B/O	NT_030843	AC078903	18953035	3			AC080148	18769701		38915	4146	38507	81568
S/G/Y/R/B/O	NT_030843	AC122129	19027661	2	chr17	NT_030843	AC087163	19174731	3	2989	0	0	2989
S/G/Y/R/B/O	NT_030843	AC122129	19027661	2			AL354000	19174731		160357	0	0	160357
S/G/Y/R/B/O	NT_030843	AC087163	19174731	3	chr17	NT_030843	AC087164	19301510	3	13402	0	0	13402
S/G/Y/R/B/O	NT_030843	AC087164	19301510	3	chr17	NT_030843	AC109515	19465939	3	95062	0	0	95062
S/G/Y/R/B/O	NT_030843	AC087164	19301510	3			AC020567	19027661		36093	0	55759	91852
S/G/Y/R/B/O	NT_030843	AC109515	19465939	3	chr17	NT_030843	AL035367	19515218	3	15023	0	0	15023
S/G/Y/R/B/O	NT_030843	AC109515	19465939	3	chr17	NT_030843	AC127537	19721817	3	13839	0	0	13839
S/G/Y/R/B/O	NT_030843	AC109515	19465939	3			AC020567	19465939		70069	0	68526	138595
S/G/Y/R/B/O	NT_030843	AL035367	19515218	3	chr17	NT_030843	AC021094	19632653	1	58287	0	0	58287
S/G/Y/R/B/O	NT_030843	AL035367	19515218	3	chr17	NT_030843	AC069486	19866285	1	10978	0	1794	12772
S/G/Y/R/B/O	NT_030843	AL035367	19515218	3	chr17	NT_030843	AC127538	19827266	1	25810	0	0	25810
S/G/Y/R/B/O	NT_030843	AL035367	19515218	3			AC020567	19515218		42308	0	0	42308
S/G/Y/R/B/O	NT_030843	AL035367	19515218	3			AL353997	19827266		25851	0	0	25851
S/G/Y/R/B/O	NT_030843	AC021094	19632653	1	chr17	NT_030843	AC127537	19721817	3	58288	0	0	58288
S/G/Y/R/B/O	NT_030843	AC021094	19632653	1	chr17	NT_030843	AC069486	19866285	1	16700	0	37296	53996
S/G/Y/R/B/O	NT_030843	AC021094	19632653	1	chr17	NT_030843	AC107983	20026663	3	10525	0	0	10525
S/G/Y/R/B/O	NT_030843	AC021094	19632653	1	chr17	NT_030843	AC127538	19827266	1	43019	0	52025	95044
S/G/Y/R/B/O	NT_030843	AC021094	19632653	1			AL353997	19515218		43298	0	50669	93967
S/G/Y/R/B/O	NT_030843	AC127537	19721817	3	chr17	NT_030843	AC127538	19827266	1	25810	0	0	25810
S/G/Y/R/B/O	NT_030843	AC127537	19721817	3	chr17	NT_030843	AC069486	19866285	1	10978	0	1794	12772
S/G/Y/R/B/O	NT_030843	AC127537	19721817	3	chr17	NT_030843	AC109515	19465939	3	13839	0	0	13839
S/G/Y/R/B/O	NT_030843	AC127537	19721817	3			AC020567	94636110		41125	0	0	41125
S/G/Y/R/B/O	NT_030843	AC127537	19721817	3			AL353997	19515218		25851	0	0	25851
S/G/Y/R/B/O	NT_030843	AC127538	19827266	1	chr17	NT_030843	AC069486	19866285	1	22616	0	2704	25320
S/G/Y/R/B/O	NT_030843	AC127538	19827266	1	chr17	NT_037951	AC015818	21936396	2	50721	0	41632	92353
S/G/Y/R/B/O	NT_030843	AC127538	19827266	1	chr17	NT_037951	AC015818	21936396	2	50721	0	41632	92353
S/G/Y/R/B/O	NT_030843	AC127538	19827266	1	chr17	NT_030843	AC021094	19632653	1	43019	0	52025	95044
S/G/Y/R/B/O	NT_030843	AC127538	19827266	1	chr17	NT_030843	AC023401	19978775	2	87427	0	3782	91209
S/G/Y/R/B/O	NT_030843	AC127538	19827266	1	chr17	NT_030843	AC023401	19978775	2	87427	0	3782	91209
S/G/Y/R/B/O	NT_030843	AC127538	19827266	1	chr17	NT_030843	AC107983	20026663	3	43783	0	0	43783
S/G/Y/R/B/O	NT_030843	AC127538	19827266	1	chr17	NT_030843	AL035367	19515218	3	25810	0	0	25810
S/G/Y/R/B/O	NT_030843	AC127538	19827266	1			AL353997	19515218		142345	0	0	142345
S/G/Y/R/B/O	NT_030843	AC069486	19866285	1	chr17	NT_030843	AC023401	19978775	2	0	0	18169	18169
S/G/Y/R/B/O	NT_030843	AC069486	19866285	1	chr17	NT_030843	AC021094	19632653	1	16700	0	37296	53996
S/G/Y/R/B/O	NT_030843	AC069486	19866285	1	chr17	NT_010718	AC098850	17639118	3	11815	0	0	11815
S/G/Y/R/B/O	NT_030843	AC069486	19866285	1	chr17	NT_030843	AC127537	19721817	3	10978	0	1794	12772
S/G/Y/R/B/O	NT_030843	AC069486	19866285	1	chr17	NT_030843	AL035367	19515218	3	10978	0	1794	12772
S/G/Y/R/B/O	NT_030843	AC069486	19866285	1			AC131307	19827266		22414	0	2572	24986
S/G/Y/R/B/O	NT_030843	AC069486	19866285	1			AL353997	19515218		22327	0	2700	25027
S/G/Y/R/B/O	NT_030843	AC023401	19978775	2	chr17	NT_030843	AC107983	20026663	3	0	0	80552	80552
S/G/Y/R/B/O	NT_030843	AC023401	19978775	2	chr17	NT_030843	AC127538	19827266	1	87427	0	3782	91209
S/G/Y/R/B/O	NT_030843	AC023401	19978775	2	chr17	NT_030843	AC127538	19827266	1	87427	0	3782	91209
S/G/Y/R/B/O	NT_030843	AC023401	19978775	2			AL353997	19827266		51076	0	0	51076
S/G/Y/R/B/O	NT_030843	AC023401	19978775	2			AL353997	19827266		51076	0	0	51076
S/G/Y/R/B/O	NT_030843	AC107983	20026663	3	chr17	NT_030843	AC026271	20157224	3	0	0	0	0
S/G/Y/R/B/O	NT_030843	AC107983	20026663	3	chr17	NT_030843	AC021094	19632653	1	10525	0	0	10525
S/G/Y/R/B/O	NT_030843	AC107983	20026663	3	chr17	NT_030843	AC127538	19827266	1	43783	0	0	43783
S/G/Y/R/B/O	NT_030843	AC107983	20026663	3			AL353997	19827266		43829	0	0	43829
S/G/Y/R/B/O	NT_030843	AC026271	20157224	3	chr17	NT_030843	AC107982	20283535	3	15846	0	0	15846
S/G/Y/R/B/O	NT_030843	AC026271	20157224	3			AC090285	19827266		36931	0	0	36931
S/G/Y/R/B/O	NT_030843	AC026271	20157224	3			AC105100	19827266		120752	0	0	120752
S/G/Y/R/B/O	NT_030843	AC026271	20157224	3			AC107931	19827266		28583	5127	2414	36124
S/G/Y/R/B/O	NT_030843	AC107982	20283535	3	chr17	NT_030843	AC090286	20437852	2	37669	0	0	37669
S/G/Y/R/B/O	NT_030843	AC107982	20283535	3			AC016334	20283535		54214	0	398	54612
S/G/Y/R/B/O	NT_030843	AC107982	20283535	3			AC107931	20437852		133611	10015	3735	147361
S/G/Y/R/B/O	NT_030843	AC090286	20437852	2	chr17	NT_030843	AC003957	20471070	3	97933	0	0	97933
S/G/Y/R/B/O	NT_030843	AC090286	20437852	2			AC016334	20471070		51586	1526	0	53112
S/G/Y/R/B/O	NT_030843	AC090286	20437852	2			AJ009617	20283535		85044	0	0	85044
S/G/Y/R/B/O	NT_030843	AC090286	20437852	2			AJ009617	20283535		85044	0	0	85044
S/G/Y/R/B/O	NT_030843	AC003957	20471070	3	chr17	NT_030843	AC007952	20597651	1	15442	0	0	15442
S/G/Y/R/B/O	NT_030843	AC003957	20471070	3			AJ009617	20437852		130510	0	0	130510
S/G/Y/R/B/O	NT_030843	AC003957	20471070	3			AJ009617	20437852		130510	0	0	130510
S/G/Y/R/B/O	NT_030843	AC007952	20597651	1	chr17	NT_030843	AC106017	20601144	2	50169	6754	5769	62692
S/G/Y/R/B/O	NT_030843	AC007952	20597651	1			AC109313	20601144		26069	3052	1898	31019
S/G/Y/R/B/O	NT_030843	AC007952	20597651	1			AJ009617	20601144		58704	8395	3683	70782
S/G/Y/R/B/O	NT_030843	AC007952	20597651	1			AJ009617	20601144		58704	8395	3683	70782
S/G/Y/R/B/O	NT_030843	AC106017	20601144	2	chr17	NT_030843	AC124066	20611650	3	21712	0	30264	51976
S/G/Y/R/B/O	NT_030843	AC106017	20601144	2			AC109313	20597651		34190	0	32426	66616
S/G/Y/R/B/O	NT_030843	AC106017	20601144	2			AJ009617	20611650		25894	9377	8769	44040
S/G/Y/R/B/O	NT_030843	AC106017	20601144	2			AJ009617	20611650		25894	9377	8769	44040
S/G/Y/R/B/O	NT_030843	AC124066	20611650	3	chr17	NT_030843	AC004448	20742969	3	0	0	0	0
S/G/Y/R/B/O	NT_030843	AC004448	20742969	3	chr17	NT_030843	AC025627	20892133	3	45829	0	0	45829
S/G/Y/R/B/O	NT_030843	AC004448	20742969	3			AL160492	20892133		40035	0	0	40035
S/G/Y/R/B/O	NT_030843	AC025627	20892133	3	chr17	NT_030843	AC015935	21086748	1	89770	0	0	89770
S/G/Y/R/B/O	NT_030843	AC015935	21086748	1	chr17	NT_030843	AC115989	21154752	3	21873	2888	12689	37450
S/G/Y/R/B/O	NT_030843	AC015935	21086748	1			AC026857	20892133		17206	0	2802	20008
S/G/Y/R/B/O	NT_030843	AC015935	21086748	1			AC113557	20892133		21304	2885	7948	32137
S/G/Y/R/B/O	NT_030843	AC115989	21154752	3	chr17	NT_030843	AC005722	21183897	3	11553	0	0	11553
S/G/Y/R/B/O	NT_030843	AC005722	21183897	3	chr17	NT_030843	AC015726	21375049	3	64884	0	0	64884
S/G/Y/R/B/O	NT_030843	AC005722	21183897	3			AC113557	21086748		112637	2656	896	116189
S/G/Y/R/B/O	NT_030843	AC015726	21375049	3	chr17	NT_030843	AC005730	21444695	3	5402	0	0	5402
S/G/Y/R/B/O	NT_030843	AC015726	21375049	3			AC022286	21444695		10722	0	28882	39604
S/G/Y/R/B/O	NT_030843	AC005730	21444695	3	chr17	NT_030843	AC007963	21601318	3	24416	0	0	24416
S/G/Y/R/B/O	NT_030843	AC005730	21444695	3			AC022286	21375049		34022	0	9948	43970
S/G/Y/R/B/O	NT_030843	AC007963	21601318	3	chr17	NT_030843	AC004702	21710374	3	0	1024	0	1024
S/G/Y/R/B/O	NT_030843	AC004702	21710374	3	chr17	NT_030843	AC008088	21830168	3	22163	0	0	22163
S/G/Y/R/B/O	NT_030843	AC004702	21710374	3			AC015940	21830168		20156	0	0	20156
S/G/Y/R/B/O	NT_030843	AC008088	21830168	3
S/G/Y/R/B/O	NT_030843	AC008088	21830168	3			AC015940	21710374		43455	0	0	43455