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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_024871 | AC105337 | 80927981 | 3 | chr17 | NT_024871 | AC100791 | 81054064 | 1 | 30380 | 0 | 0 | 30380 |
S/G/Y/R/B/O |
NT_024871 | AC105337 | 80927981 | 3 |   |   | AC026373 | 80927981 | | 13609 | 0 | 6688 | 20297 |
S/G/Y/R/B/O |
NT_024871 | AC100791 | 81054064 | 1 | chr17 | NT_024871 | AC116025 | 81123807 | 2 | 111466 | 0 | 2152 | 113618 |
S/G/Y/R/B/O |
NT_024871 | AC100791 | 81054064 | 1 |   |   | AC016048 | 81054064 | | 50552 | 0 | 103404 | 153956 |
S/G/Y/R/B/O |
NT_024871 | AC100791 | 81054064 | 1 |   |   | AC016048 | 81054064 | | 50552 | 0 | 103404 | 153956 |
S/G/Y/R/B/O |
NT_024871 | AC100791 | 81054064 | 1 |   |   | AC026373 | 81054064 | | 119881 | 1995 | 37745 | 159621 |
S/G/Y/R/B/O |
NT_024871 | AC100791 | 81054064 | 1 |   |   | AC026373 | 81054064 | | 119881 | 1995 | 37745 | 159621 |
S/G/Y/R/B/O |
NT_024871 | AC116025 | 81123807 | 2 | chr17 | NT_024871 | AC087741 | 81331142 | 1 | 42880 | 0 | 0 | 42880 |
S/G/Y/R/B/O |
NT_024871 | AC116025 | 81123807 | 2 |   |   | AC015559 | 81123807 | | 11239 | 0 | 31912 | 43151 |
S/G/Y/R/B/O |
NT_024871 | AC116025 | 81123807 | 2 |   |   | AC015559 | 81123807 | | 11239 | 0 | 31912 | 43151 |
S/G/Y/R/B/O |
NT_024871 | AC116025 | 81123807 | 2 |   |   | AC016048 | 81123807 | | 40505 | 0 | 26754 | 67259 |
S/G/Y/R/B/O |
NT_024871 | AC116025 | 81123807 | 2 |   |   | AC016048 | 81123807 | | 40505 | 0 | 26754 | 67259 |
S/G/Y/R/B/O |
NT_024871 | AC116025 | 81123807 | 2 |   |   | AC026373 | 81123807 | | 67107 | 3517 | 16761 | 87385 |
S/G/Y/R/B/O |
NT_024871 | AC116025 | 81123807 | 2 |   |   | AC026373 | 81123807 | | 67107 | 3517 | 16761 | 87385 |
S/G/Y/R/B/O |
NT_024871 | AC087741 | 81331142 | 1 | chr17 | NT_024871 | AC134688 | 81380419 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_024871 | AC087741 | 81331142 | 1 | chr17 | NT_024871 | AC109321 | 81487575 | 2 | 124014 | 0 | 0 | 124014 |
S/G/Y/R/B/O |
NT_024871 | AC087741 | 81331142 | 1 | chr17 | NT_024871 | AC109321 | 81487575 | 2 | 124014 | 0 | 0 | 124014 |
S/G/Y/R/B/O |
NT_024871 | AC087741 | 81331142 | 1 | chr17 | NT_024871 | AC109321 | 81487575 | 2 | 124014 | 0 | 0 | 124014 |
S/G/Y/R/B/O |
NT_024871 | AC087741 | 81331142 | 1 | chr17 | NT_024871 | AC109321 | 81487575 | 2 | 124014 | 0 | 0 | 124014 |
S/G/Y/R/B/O |
NT_024871 | AC087741 | 81331142 | 1 |   |   | AC015559 | 81054064 | | 65362 | 0 | 35107 | 100469 |
S/G/Y/R/B/O |
NT_024871 | AC087741 | 81331142 | 1 |   |   | AC015559 | 81054064 | | 65362 | 0 | 35107 | 100469 |
S/G/Y/R/B/O |
NT_024871 | AC087741 | 81331142 | 1 |   |   | AC123764 | 81123807 | | 38800 | 2220 | 0 | 41020 |
S/G/Y/R/B/O |
NT_024871 | AC087741 | 81331142 | 1 |   |   | AC123764 | 81123807 | | 38800 | 2220 | 0 | 41020 |
S/G/Y/R/B/O |
NT_024871 | AC134688 | 81380419 | 1 | chr17 | NT_024871 | AC127508 | 81388098 | 1 | 44418 | 1879 | 2790 | 49087 |
S/G/Y/R/B/O |
NT_024871 | AC134688 | 81380419 | 1 | chr17 | NT_024871 | AC109321 | 81487575 | 2 | 19161 | 0 | 9925 | 29086 |
S/G/Y/R/B/O |
NT_024871 | AC134688 | 81380419 | 1 | chr17 | NT_024871 | AC109321 | 81487575 | 2 | 19161 | 0 | 9925 | 29086 |
S/G/Y/R/B/O |
NT_024871 | AC134688 | 81380419 | 1 | chr17 | NT_024871 | AC109327 | 81790013 | 2 | 16980 | 0 | 0 | 16980 |
S/G/Y/R/B/O |
NT_024871 | AC134688 | 81380419 | 1 |   |   | AC123764 | 81694279 | | 22810 | 3119 | 12611 | 38540 |
S/G/Y/R/B/O |
NT_024871 | AC134688 | 81380419 | 1 |   |   | AC124319 | 81694279 | | 17396 | 1877 | 3351 | 22624 |
S/G/Y/R/B/O |
NT_024871 | AC134688 | 81380419 | 1 |   |   | AC126541 | 81694279 | | 17132 | 3985 | 1324 | 22441 |
S/G/Y/R/B/O |
NT_024871 | AC127508 | 81388098 | 1 | chr17 | NT_024871 | AC109321 | 81487575 | 2 | 26120 | 0 | 6393 | 32513 |
S/G/Y/R/B/O |
NT_024871 | AC127508 | 81388098 | 1 |   |   | AC123764 | 81487575 | | 33578 | 5192 | 0 | 38770 |
S/G/Y/R/B/O |
NT_024871 | AC127508 | 81388098 | 1 |   |   | AC123764 | 81487575 | | 33578 | 5192 | 0 | 38770 |
S/G/Y/R/B/O |
NT_024871 | AC127508 | 81388098 | 1 |   |   | AC126541 | 81487575 | | 10052 | 2865 | 561 | 13478 |
S/G/Y/R/B/O |
NT_024871 | AC127508 | 81388098 | 1 |   |   | AC126541 | 81487575 | | 10052 | 2865 | 561 | 13478 |
S/G/Y/R/B/O |
NT_024871 | AC109321 | 81487575 | 2 | chr17 | NT_024871 | AC120024 | 81694279 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_024871 | AC109321 | 81487575 | 2 | chr17 | NT_024871 | AC087741 | 81331142 | 1 | 124014 | 0 | 0 | 124014 |
S/G/Y/R/B/O |
NT_024871 | AC109321 | 81487575 | 2 | chr17 | NT_024871 | AC087741 | 81331142 | 1 | 124014 | 0 | 0 | 124014 |
S/G/Y/R/B/O |
NT_024871 | AC109321 | 81487575 | 2 | chr17 | NT_024871 | AC087741 | 81331142 | 1 | 124014 | 0 | 0 | 124014 |
S/G/Y/R/B/O |
NT_024871 | AC109321 | 81487575 | 2 | chr17 | NT_024871 | AC087741 | 81331142 | 1 | 124014 | 0 | 0 | 124014 |
S/G/Y/R/B/O |
NT_024871 | AC109321 | 81487575 | 2 | chr17 | NT_024871 | AC134688 | 81380419 | 1 | 19161 | 0 | 9925 | 29086 |
S/G/Y/R/B/O |
NT_024871 | AC109321 | 81487575 | 2 | chr17 | NT_024871 | AC134688 | 81380419 | 1 | 19161 | 0 | 9925 | 29086 |
S/G/Y/R/B/O |
NT_024871 | AC109321 | 81487575 | 2 |   |   | AC015559 | 81380419 | | 18631 | 0 | 2965 | 21596 |
S/G/Y/R/B/O |
NT_024871 | AC109321 | 81487575 | 2 |   |   | AC015559 | 81380419 | | 18631 | 0 | 2965 | 21596 |
S/G/Y/R/B/O |
NT_024871 | AC109321 | 81487575 | 2 |   |   | AC123764 | 81331142 | | 88786 | 2220 | 12106 | 103112 |
S/G/Y/R/B/O |
NT_024871 | AC109321 | 81487575 | 2 |   |   | AC123764 | 81331142 | | 88786 | 2220 | 12106 | 103112 |
S/G/Y/R/B/O |
NT_024871 | AC120024 | 81694279 | 2 | chr17 | NT_024871 | AC109327 | 81790013 | 2 | 93326 | 0 | 0 | 93326 |
S/G/Y/R/B/O |
NT_024871 | AC120024 | 81694279 | 2 |   |   | AC124319 | 81790013 | | 33484 | 0 | 0 | 33484 |
S/G/Y/R/B/O |
NT_024871 | AC120024 | 81694279 | 2 |   |   | AC124319 | 81790013 | | 33484 | 0 | 0 | 33484 |
S/G/Y/R/B/O |
NT_024871 | AC120024 | 81694279 | 2 |   |   | AC127515 | 81790013 | | 32950 | 0 | 0 | 32950 |
S/G/Y/R/B/O |
NT_024871 | AC120024 | 81694279 | 2 |   |   | AC127515 | 81790013 | | 32950 | 0 | 0 | 32950 |
S/G/Y/R/B/O |
NT_024871 | AC120024 | 81694279 | 2 |   |   | AC127515 | 81790013 | | 32950 | 0 | 0 | 32950 |
S/G/Y/R/B/O |
NT_024871 | AC120024 | 81694279 | 2 |   |   | AC127515 | 81790013 | | 32950 | 0 | 0 | 32950 |
S/G/Y/R/B/O |
NT_024871 | AC109327 | 81790013 | 2 | chr17 | NT_024871 | AC133012 | 81904239 | 1 | 17308 | 0 | 0 | 17308 |
S/G/Y/R/B/O |
NT_024871 | AC109327 | 81790013 | 2 | chr17 | NT_024871 | AC023493 | 81905863 | 1 | 15552 | 0 | 0 | 15552 |
S/G/Y/R/B/O |
NT_024871 | AC109327 | 81790013 | 2 | chr17 | NT_024871 | AC134688 | 81380419 | 1 | 16980 | 0 | 0 | 16980 |
S/G/Y/R/B/O |
NT_024871 | AC109327 | 81790013 | 2 |   |   | AC087530 | 81905863 | | 15555 | 0 | 0 | 15555 |
S/G/Y/R/B/O |
NT_024871 | AC109327 | 81790013 | 2 |   |   | AC126541 | 81694279 | | 31123 | 0 | 0 | 31123 |
S/G/Y/R/B/O |
NT_024871 | AC109327 | 81790013 | 2 |   |   | AC132857 | 81694279 | | 20350 | 2445 | 0 | 22795 |
S/G/Y/R/B/O |
NT_024871 | AC109327 | 81790013 | 2 |   |   | AC133638 | 81904239 | | 20362 | 0 | 0 | 20362 |
S/G/Y/R/B/O |
NT_024871 | AC109327 | 81790013 | 2 |   |   | AC133638 | 81904239 | | 20362 | 0 | 0 | 20362 |
S/G/Y/R/B/O |
NT_024871 | AC133012 | 81904239 | 1 | chr17 | NT_024871 | AC023493 | 81905863 | 1 | 44511 | 0 | 85242 | 129753 |
S/G/Y/R/B/O |
NT_024871 | AC133012 | 81904239 | 1 | chr17 | NT_035456 | AC016245 | 82067902 | 3 | 15423 | 0 | 0 | 15423 |
S/G/Y/R/B/O |
NT_024871 | AC133012 | 81904239 | 1 |   |   | AC087530 | 81905863 | | 148793 | 0 | 0 | 148793 |
S/G/Y/R/B/O |
NT_024871 | AC133012 | 81904239 | 1 |   |   | AC132857 | 81790013 | | 150240 | 0 | 0 | 150240 |
S/G/Y/R/B/O |
NT_024871 | AC133012 | 81904239 | 1 |   |   | AC133638 | 81790013 | | 51123 | 0 | 75979 | 127102 |
S/G/Y/R/B/O |
NT_024871 | AC133012 | 81904239 | 1 |   |   | AC133638 | 81790013 | | 51123 | 0 | 75979 | 127102 |
S/G/Y/R/B/O |
NT_024871 | AC023493 | 81905863 | 1 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_024871 | AC023493 | 81905863 | 1 | chr17 | NT_035456 | AC016245 | 82067902 | 3 | 27475 | 0 | 7128 | 34603 |
S/G/Y/R/B/O |
NT_024871 | AC023493 | 81905863 | 1 | chr17 | NT_024871 | AC109327 | 81790013 | 2 | 15552 | 0 | 0 | 15552 |
S/G/Y/R/B/O |
NT_024871 | AC023493 | 81905863 | 1 |   |   | AC087530 | 82067902 | | 33175 | 0 | 89489 | 122664 |
S/G/Y/R/B/O |
NT_024871 | AC023493 | 81905863 | 1 |   |   | AC132857 | 81790013 | | 78893 | 0 | 58110 | 137003 |
S/G/Y/R/B/O |
NT_024871 | AC023493 | 81905863 | 1 |   |   | AC133638 | 81904239 | | 38174 | 0 | 20268 | 58442 |
S/G/Y/R/B/O |
NT_024871 | AC023493 | 81905863 | 1 |   |   | AC133638 | 81904239 | | 38174 | 0 | 20268 | 58442 |
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