VGP - Vertebrate Genomes Project assembly hub

This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of primary assemblies)

How to view the hub

Options:

1. The links to the genome browser in the table below will attach that one specific assembly to the genome browser. This is most likely what you want. Alternatively, the entire set of assemblies can be attached as one group to the genome browser with the following links depending upon which of our mirror site browsers you prefer to use:

   attach all assemblies to selected site:		genome.ucsc.edu		genome-euro.ucsc.edu		genome-asia.ucsc.edu

2. To manually attach all the assemblies in this hub to genome browsers that are not one of the three UCSC mirror sites:
   1. From the blue navigation bar, go to My Data -> Track Hubs
   2. Then select the My Hubs tab and enter this URL into the textbox:
      https://hgdownload.soe.ucsc.edu/hubs/VGP/hub.txt
   3. Once you have added the URL to the entry form, press the Add Hub button to add the hub.

After adding the hub, you will be redirected to the gateway page. The genome assemblies can be selected from the VGP Hub Assembly dropdown menu. Instead of adding all the assemblies in one collected group, use the individual view in browser in the table below.

See also: assembly statistics, track statistics <== additional information for these assemblies.

Listings:

  (from RepeatModeler masking)

• families fasta.gz list of URLs for the custom library created by the RepeatModeler run
• assembly 2bit file list of URLs as masked with the RepeatModeler + TRF/simpleRepeats with period of 12 or less
• the rmod.log files from each RepeatModeler run
• default GenArk 2bit file list of URLs as masked with the ordinary RepeatMasker + TRF/simpleRepeats with period of 12 or less
• this data table in tab-separated file text format (including TBD not working yet, or in VGP collection but not on the alignment list)

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The class VGP link provides access to the VGP GenomeArk page for that genome.
The other links provide access to NCBI resources for these assemblies.

count	common name and view in browser	scientific name and data download	NCBI assembly	BioSample	BioProject	assembly date, source link	class VGP link
1	Abyssinian ground-hornbill	Bucorvus abyssinicus	GCA_009769605.1_bBucAby1.pri	SAMN12614799	PRJNA561887	2019-12-23	birds
2	Aeolian wall lizard (rPodRaf1 primary hap 2022)	Podarcis raffonei	GCF_027172205.1_rPodRaf1.pri	SAMN28455423	PRJNA839511	2022-12-27	reptiles
3	American flamingo	Phoenicopterus ruber ruber	GCA_009819775.1_bPhoRub2.pri	SAMN12614931	PRJNA561888	2019-12-31	birds
4	American shad	Alosa sapidissima	GCF_018492685.1_fAloSap1.pri	SAMN18857608	PRJNA728145	2021-05-25	fish
5	Anna's hummingbird	Calypte anna	GCA_003957555.2_bCalAnn1_v1.p	SAMN02265252	PRJNA489139	2019-05-16	birds
6	Aristotle's catfish (2022)	Silurus aristotelis	GCA_946808225.1_fSilAri3.1	SAMEA12595289	PRJEB55686	2022-09-15	fish
7	Asian bonytongue	Scleropages formosus	GCF_900964775.1_fSclFor1.1	SAMEA4872123	PRJEB31995	2019-04-11	fish
8	Asiatic elephant (mEleMax1 primary hap 2022)	Elephas maximus indicus	GCF_024166365.1_mEleMax1_primary_haplotype	SAMN29174328	PRJNA850184	2022-07-06	mammals
9	Atlantic cod	Gadus morhua	GCF_902167405.1_gadMor3.0	SAMEA5574046	PRJEB33455	2019-07-16	fish
10	Atlantic halibut (refseq)	Hippoglossus hippoglossus	GCF_009819705.1_fHipHip1.pri	SAMN12629501	PRJNA562001	2019-12-31	fish
11	Atlantic horse mackerel (2021)	Trachurus trachurus	GCA_905171665.2_fTraTra1.2	SAMEA7524396	PRJEB42172	2021-11-26	fish
12	Australian echidna (mTacAcu1 primary hap 2020)	Tachyglossus aculeatus	GCF_015852505.1_mTacAcu1.pri	SAMN12634963	PRJNA607237	2020-12-09	mammals
13	banded archerfish	Toxotes jaculatrix	GCF_017976425.1_fToxJac2.pri	SAMN18445299	PRJNA717046	2021-04-15	fish
14	barbel (2022)	Barbus barbus	GCA_936440315.1_fBarBab1.1	SAMEA13335783	PRJEB52077	2022-05-03	fish
15	barn swallow (bHirRus1 v3 primary hap 2021)	Hirundo rustica	GCA_015227805.3_bHirRus1.pri.v3	SAMN14675488	PRJNA636192	2021-11-30	birds
16	black-legged kittiwake (bRisTri1.mat 2023)	Rissa tridactyla	GCA_028501385.1_bRisTri1.mat.cur.20221130	SAMN32104255	PRJNA909854	2023-02-10	birds
17	black-legged kittiwake (bRisTri1 2023 refseq)	Rissa tridactyla	GCF_028500815.1_bRisTri1.patW.cur.20221130	SAMN32104255	PRJNA909853	2023-02-09	birds
18	black rhinoceros (2021)	Diceros bicornis minor	GCA_020826845.1_mDicBic1.mat.cur	SAMN22047685	PRJNA773944	2021-11-10	mammals
19	blackbelly eelpout (fLycPai1 haplotype 1 2023)	Lycodopsis pacificus	GCA_028021495.1_fLycPai1.hap1	SAMN32629383	PRJNA921713	2023-01-26	fish
20	blackbelly eelpout (fLycPai1 haplotype 2 2023)	Lycodopsis pacificus	GCA_028022725.1_fLycPai1.hap2	SAMN32629383	PRJNA921714	2023-01-31	fish
21	blackcap	Sylvia atricapilla	GCA_009819655.1_bSylAtr1.pri	SAMN12369542	PRJNA558064	2019-12-31	birds
22	Blainville's beaked whale (mMesDen1 primary hap 2022)	Mesoplodon densirostris	GCA_025265405.1_mMesDen1_primary_haplotype	SAMN29828597	PRJNA873668	2022-09-19	mammals
23	blue whale (JJ_BM4_2016_0621 v3 primary hap 2020)	Balaenoptera musculus	GCF_009873245.2_mBalMus1.pri.v3	SAMN12287136	PRJNA554522	2020-10-02	mammals
24	blunt-snouted clingfish (v2 2020 genbank)	Gouania willdenowi	GCA_900634775.2_fGouWil2.2	SAMEA104026382	PRJEB30359	2020-07-31	fish
25	Boeseman's rainbowfish	Melanotaenia boesemani	GCF_017639745.1_fMelBoe1.pri	SAMN12623618	PRJNA561965	2021-03-30	fish
26	bonti-bonti (T.bonti 2022)	Telmatherina bonti	GCA_933228915.1_fTelBon1.1	SAMEA8592627	PRJEB51590	2022-03-23	fish
27	brown argus butterfly	Aricia agestis	GCF_905147365.1_ilAriAges1.1	SAMEA7523300	PRJEB41901	2021-01-28	insects
28	butterfish (2021 G10K)	Scatophagus argus	GCF_020382885.2_fScaArg1.pri	SAMN12623616	PRJNA749579	2021-10-13	fish
29	California sea lion (v2 primary hap 2020)	Zalophus californianus	GCF_009762305.2_mZalCal1.pri.v2	SAMN12368149	PRJNA559673	2020-07-14	mammals
30	Canada lynx (LIC74 v2 primary hap 2020)	Lynx canadensis	GCF_007474595.2_mLynCan4.pri.v2	SAMN09948483	PRJNA489107	2020-07-14	mammals
31	carmine bee-eater	Merops nubicus	GCA_009819595.1_bMerNub1.pri	SAMN12621035	PRJNA561894	2019-12-31	birds
32	channel bull blenny	Cottoperca gobio	GCF_900634415.1_fCotGob3.1	SAMEA104242975	PRJEB30248	2019-02-06	fish
33	chicken (Cobb bGalGal5 primary hap 2022)	Gallus gallus	GCA_027408225.1_bGalGal5.pri	SAMN28017485	PRJNA838370	2022-12-28	birds
34	chicken (Ross bGalGal4 primary hap 2023)	Gallus gallus	GCA_027557775.1_bGalGal4.pri	SAMN28017486	PRJNA838369	2023-01-03	birds
35	chub mackerel (fScoJap1 primary hap 2022)	Scomber japonicus	GCF_027409825.1_fScoJap1.pri	SAMN32224830	PRJNA912108	2022-12-28	fish
36	climbing perch (v1.3 2021)	Anabas testudineus	GCA_900324465.3_fAnaTes1.3	SAMEA104026376	PRJEB25768	2021-04-24	fish
37	common brushtail (refseq 2020)	Trichosurus vulpecula	GCF_011100635.1_mTriVul1.pri	SAMN12629507	PRJNA562014	2020-03-10	mammals
38	common cuckoo (bCucCan1 primary hap 2021 refseq)	Cuculus canorus	GCF_017976375.1_bCucCan1.pri	SAMN12629508	PRJNA562015	2021-04-15	birds
39	common myna (bArcTri1 primary hap 2023)	Acridotheres tristis	GCA_027559615.1_bAcrTri1.pri	SAMN28454388	PRJNA839507	2023-01-09	birds
40	common pipistrelle (2020)	Pipistrellus pipistrellus	GCA_903992545.1_mPipPip1.1	SAMEA994724	PRJEB39564	2020-08-06	mammals
41	common swift (bApuApu2 2021 refseq)	Apus apus	GCF_020740795.1_bApuApu2.pri.cur	SAMN22785356	PRJNA776336	2021-11-04	birds
42	common tern	Sterna hirundo	GCA_009819605.1_bSteHir1.pri	SAMN12369541	PRJNA558062	2019-12-31	birds
43	common toad	Bufo bufo	GCF_905171765.1_aBufBuf1.1	SAMEA7521636	PRJEB42168	2021-01-28	amphibians
44	common yellowthroat	Geothlypis trichas	GCA_009764595.1_bGeoTri1.pri	SAMN12631222	PRJNA589703	2019-12-19	birds
45	convict blenny (chichlid 2021)	Pholidichthys leucotaenia	GCA_020510985.1_fPhoLeu1.pri	SAMN12623617	PRJNA749575	2021-10-15	fish
46	copperband butterflyfish	Chelmon rostratus	GCF_017976325.1_fCheRos1.pri	SAMN12623620	PRJNA561969	2021-04-15	fish
47	cunner (2021)	Tautogolabrus adspersus	GCA_020745685.1_fTauAds1.pri.cur	SAMN22589422	PRJNA774878	2021-11-05	fish
48	dark-edged splitfin (DD_20200921_A 2022)	Girardinichthys multiradiatus	GCF_021462225.1_DD_fGirMul_XY1	SAMN22242658	PRJNA768329	2022-02-24	fish
49	denticle herring (v2 2020)	Denticeps clupeoides	GCA_900700375.2_fDenClu1.2	SAMEA104129917	PRJEB31545	2020-07-31	fish
50	diamondback terrapin (rMalTer1 2023)	Malaclemys terrapin pileata	GCF_027887155.1_rMalTer1.hap1	SAMN31394215	PRJNA895896	2023-01-18	reptiles
51	downy woodpecker (bDryPub1 primary hap 2020)	Dryobates pubescens	GCF_014839835.1_bDryPub1.pri	SAMN12629497	PRJNA561991	2020-10-02	birds
52	East African grey crowned-crane	Balearica regulorum gibbericeps	GCA_011004875.1_bBalReg1.pri	SAMN12615749	PRJNA561890	2020-03-05	birds
53	eastern happy (v3 2021)	Astatotilapia calliptera	GCA_900246225.5_fAstCal1.3	SAMEA104026430	PRJEB24325	2021-04-24	fish
54	Egyptian rousette (2020)	Rousettus aegyptiacus	GCF_014176215.1_mRouAeg1.p	SAMN14734550	PRJNA628585	2020-08-07	mammals
55	electric eel	Electrophorus electricus	GCF_013358815.1_fEleEle1.pri	SAMN12623625	PRJNA561981	2020-06-23	fish
56	emu (v2 ZJU1.0 2023)	Dromaius novaehollandiae	GCA_016128335.2_ZJU2.0	SAMN15183959	PRJNA638233	2023-01-13	birds
57	epaulette shark (sHemOce1 2021)	Hemiscyllium ocellatum	GCA_020745735.1_sHemOce1.pat.X.cur.	SAMN22550098	PRJNA774310	2021-11-05	sharks
58	ermine (2020)	Mustela erminea	GCF_009829155.1_mMusErm1.Pri	SAMN12611999	PRJNA561931	2020-01-03	mammals
59	Eurasian badger (2021)	Meles meles	GCA_922990625.1_mMelMel3.1_maternal_haplotype_uncurated	SAMEA7524400	PRJEB49352	2021-12-18	mammals
60	Eurasian nightjar	Caprimulgus europaeus	GCA_907165065.1_bCapEur3.1	SAMEA7524394	PRJEB44540	2021-05-17	birds
61	Eurasian red squirrel (2019)	Sciurus vulgaris	GCA_902686455.1_mSciVul1.1	SAMEA994733	PRJEB35380	2019-11-26	mammals
62	Eurasian river otter (2020)	Lutra lutra	GCF_902655055.1_mLutLut1.2	SAMEA994731	PRJEB35339	2020-07-31	mammals
63	Eurasian water vole (v2 2021)	Arvicola amphibius	GCF_903992535.2_mArvAmp1.2	SAMEA994740	PRJEB39550	2021-05-15	mammals
64	European common frog	Rana temporaria	GCF_905171775.1_aRanTem1.1	SAMEA7521635	PRJEB42171	2021-01-28	amphibians
65	European eel	Anguilla anguilla	GCF_013347855.1_fAngAng1.pri	SAMN12623627	PRJNA561979	2020-06-18	fish
66	European golden plover	Pluvialis apricaria	GCA_017639485.1_bPluApr1.pri	SAMN18353970	PRJNA715924	2021-03-30	birds
67	European plaice (primary hap 2022)	Pleuronectes platessa	GCF_947347685.1_fPlePla1.1	SAMEA13853390	PRJEB57577	2022-11-29	fish
68	European robin	Erithacus rubecula	GCA_903797595.2_bEriRub2.2	SAMEA4760689	PRJEB38658	2021-05-03	birds
69	European shrew (mSorAra2 primary hap 2023)	Sorex araneus	GCF_027595985.1_mSorAra2.pri	SAMN32477717	PRJNA916523	2023-01-09	mammals
70	European starfish	Asterias rubens	GCF_902459465.1_eAstRub1.3	SAMEA994741	PRJEB33974	2020-02-12	echinoderm
71	European turtle dove (v1.2 2021)	Streptopelia turtur	GCA_901699155.2_bStrTur1.2	SAMEA994735	PRJEB32724	2021-05-17	birds
72	European woodmouse (2022 refseq)	Apodemus sylvaticus	GCF_947179515.1_mApoSyl1.1	SAMEA7702024	PRJEB56948	2022-10-28	mammals
73	fire-bellied toad (aBomBom1 primary hap 2023)	Bombina bombina	GCF_027579735.1_aBomBom1.pri	SAMN32378350	PRJNA915412	2023-01-09	amphibians
74	flier cichlid	Archocentrus centrarchus	GCF_007364275.1_fArcCen1	SAMN09948522	PRJNA489129	2019-08-01	fish
75	freshwater garfish (fXenCan1 2020)	Xenentodon cancila	GCA_014839995.1_fXenCan1.pri	SAMN12623622	PRJNA561973	2020-10-02	fish
76	Gabon caecilian	Geotrypetes seraphini	GCF_902459505.1_aGeoSer1.1	SAMEA104387963	PRJEB33992	2019-08-18	amphibians
77	garden warbler	Sylvia borin	GCA_014839755.1_bSylBor1.pri	SAMN12618613	PRJNA561945	2020-10-02	birds
78	gilthead seabream (v2 2021)	Sparus aurata	GCA_900880675.2_fSpaAur1.2	SAMEA104384835	PRJEB31901	2021-04-24	fish
79	golden eagle (2021)	Aquila chrysaetos chrysaetos	GCF_900496995.4_bAquChr1.4	SAMEA994725	PRJEB27699	2021-03-26	birds
80	golden spiny mouse (2020)	Acomys russatus	GCF_903995435.1_mAcoRus1.1	SAMEA104026431	PRJEB39768	2020-08-21	mammals
81	Goodes thornscrub tortoise	Gopherus evgoodei	GCF_007399415.2_rGopEvg1_v1.p	SAMN03496275	PRJNA489103	2019-07-25	reptiles
82	gray squirrel (2020)	Sciurus carolinensis	GCF_902686445.1_mSciCar1.2	SAMEA994726	PRJEB35386	2020-07-31	mammals
83	gray wolf (2021)	Canis lupus	GCA_905319855.2_mCanLor1.2	SAMEA7532739	PRJEB43200	2021-03-26	mammals
84	great potoo	Nyctibius grandis	GCA_013368605.1_bNycGra1.pri	SAMN12622411	PRJNA562020	2020-06-23	birds
85	great scallop	Pecten maximus	GCF_902652985.1_xPecMax1.1	SAMEA994736	PRJEB35330	2019-11-26	molluscs
86	great white shark	Carcharodon carcharias	GCF_017639515.1_sCarCar2.pri	SAMN12629504	PRJNA562007	2021-03-30	sharks
87	greater horseshoe bat (v2 MPI-CBG 2019)	Rhinolophus ferrumequinum	GCF_004115265.2_mRhiFer1_v1.p	SAMN09948510	PRJNA489106	2019-05-16	mammals
88	greater horseshoe bat (mRhiFer1 2020)	Rhinolophus ferrumequinum	GCA_014108255.1_mRhiFer1.p	SAMN14734547	PRJNA628581	2020-08-13	mammals
89	greater pipefish	Syngnathus acus	GCF_901709675.1_fSynAcu1.2	SAMEA104381750	PRJEB32741	2020-07-31	fish
90	greater mouse-eared bat (2020 Bat1K)	Myotis myotis	GCF_014108235.1_mMyoMyo1.p	SAMN14734277	PRJNA628559	2020-08-07	mammals
91	green sea turtle (v2 2021)	Chelonia mydas	GCF_015237465.2_rCheMyd1.pri.v2	SAMN12612360	PRJNA561941	2021-07-15	reptiles
92	gyrfalcon	Falco rusticolus	GCF_015220075.1_bFalRus1.pri	SAMN12629496	PRJNA561988	2020-11-03	birds
93	Harpy eagle (bHarHar1 2022)	Harpia harpyja	GCF_026419915.1_bHarHar1_primary_haplotype	SAMN31530492	PRJNA896141	2022-11-27	birds
94	Hawaiian crow (2021 refseq)	Corvus hawaiiensis	GCF_020740725.1_bCorHaw1.pri.cur	SAMN22550278	PRJNA774314	2021-11-04	birds
95	honeycomb rockfish	Sebastes umbrosus	GCF_015220745.1_fSebUmb1.pri	SAMN12629503	PRJNA562005	2020-11-03	fish
96	house finch (bHaeMex1 primary hap 2022)	Haemorhous mexicanus	GCA_027477595.1_bHaeMex1.pri	SAMN28453576	PRJNA839499	2022-12-29	birds
97	human (mHomSap3 WGS:JACSEX01 2021)	Homo sapiens	GCA_016695395.2_mHomSap3.mat	SAMN12568975	PRJNA562023	2021-01-19	mammals
98	Humboldt's penguin (bSphHub1 primary hap 2022)	Spheniscus humboldti	GCA_027474245.1_bSphHub1.pri	SAMN28408465	PRJNA838343	2022-12-28	birds
99	hybrid cattle (Angus x Brahman F1 Angus haplotype 2018)	Bos indicus x Bos taurus	GCA_003369685.2_UOA_Angus_1	SAMN08473802	PRJNA432857	2018-11-30	mammals
100	hybrid cattle (Angus x Brahman F1 Brahman haplotype 2018)	Bos indicus x Bos taurus	GCF_003369695.1_UOA_Brahman_1	SAMN08473802	PRJNA432857	2018-11-30	mammals
101	Indian glassy fish (v2 2020)	Parambassis ranga	GCA_900634625.2_fParRan2.2	SAMEA4675621	PRJEB30257	2020-07-31	fish
102	Indo-Pacific tarpon	Megalops cyprinoides	GCF_013368585.1_fMegCyp1.pri	SAMN12623619	PRJNA561967	2020-06-23	fish
103	jewelled blenny	Salarias fasciatus	GCF_902148845.1_fSalaFa1.1	SAMEA4966329	PRJEB33184	2019-07-03	fish
104	kagu (bRhyJub1 primary hap 2023)	Rhynochetos jubatus	GCA_027574665.1_bRhyJub1.pri	SAMN31802033	PRJNA916495	2023-01-09	birds
105	kakapo	Strigops habroptila	GCF_004027225.2_bStrHab1.2.pri	SAMN09948751	PRJNA489135	2020-03-04	birds
106	killer whale (2022)	Orcinus orca	GCF_937001465.1_mOrcOrc1.1	SAMEA8800229	PRJEB52131	2022-05-03	mammals
107	Korean giant-fin mudskipper (v1.2 primary hap 2023)	Periophthalmus magnuspinnatus	GCF_009829125.3_fPerMag1.2.pri	SAMN12629500	PRJNA561998	2023-03-21	fish
108	Kuhl's pipistrelle (2020)	Pipistrellus kuhlii	GCF_014108245.1_mPipKuh1.p	SAMN14734388	PRJNA628567	2020-08-07	mammals
109	lammergeier (bGypBar2 primary hap 2023)	Gypaetus barbatus	GCA_028022735.1_bGypBar2.pri	SAMN32256411	PRJNA912841	2023-01-31	birds
110	lance-tailed manakin	Chiroxiphia lanceolata	GCF_009829145.1_bChiLan1.pri	SAMN12620979	PRJNA561943	2020-01-03	birds
111	lanner falcon (2022)	Falco biarmicus	GCA_023638135.1_bFalBia1.pri	SAMN28688289	PRJNA842826	2022-06-02	birds
112	largescale foureyes (2020)	Anableps anableps	GCA_014839685.1_fAnaAna1.pri	SAMN12623628	PRJNA561985	2020-10-02	fish
113	Lataste's viper (rVipLat1 2022)	Vipera latastei	GCA_024294585.1_rVipLat1.pri	SAMN28408464	PRJNA838200	2022-07-20	reptiles
114	leatherback sea turtle (v4 2021 refseq G10K)	Dermochelys coriacea	GCF_009764565.3_rDerCor1.pri.v4	SAMN12629498	PRJNA561993	2021-08-25	reptiles
115	lesser Egyptian jerboa (2021)	Jaculus jaculus	GCF_020740685.1_mJacJac1.mat.Y.cur	SAMN20391724	PRJNA773797	2021-11-04	mammals
116	lesser kestrel (v2 2021)	Falco naumanni	GCF_017639655.2_bFalNau1.pat	SAMN16870685	PRJNA702666	2021-03-30	birds
117	lesser rhea (bPtePen1 primary hap 2023)	Rhea pennata	GCA_028389875.1_bPtePen1.pri	SAMN32606345	PRJNA918801	2023-02-06	birds
118	lesser salmon catfish (fNeoGra1 primary hap 2023)	Neoarius graeffei	GCA_027579695.1_fNeoGra1.pri	SAMN28453209	PRJNA839496	2023-01-09	fish
119	live sharksucker (v2 2021)	Echeneis naucrates	GCA_900963305.2_fEcheNa1.2	SAMEA4966390	PRJEB31992	2021-04-24	fish
120	long-tailed hermit (PSU5 primary hap 2022)	Phaethornis superciliosus	GCA_023637945.1_DD_ASM_B1	SAMN23532249	PRJNA785144	2022-06-01	birds
121	longspined bullhead (2021)	Taurulus bubalis	GCA_910589615.1_fTauBub2.1	SAMEA7522994	PRJEB45317	2021-07-07	fish
122	lumpfish (refseq)	Cyclopterus lumpus	GCF_009769545.1_fCycLum1.pri	SAMN12629502	PRJNA562003	2019-12-23	fish
123	maguari stork (2021)	Ciconia maguari	GCA_017639555.1_bCicMag1.pri	SAMN18353822	PRJNA715733	2021-03-30	birds
124	mallard (Pekin duck Z2 2020 Zhejiang U)	Anas platyrhynchos	GCF_015476345.1_ZJU1.0	SAMN15588841	PRJNA636121	2020-11-23	birds
125	meadow viper (2022)	Vipera ursinii	GCA_947247035.1_rVipUrs1.1	SAMEA12832258	PRJEB57183	2022-10-30	reptiles
126	Mexican gopher tortoise (WGS:JAMKFC01 2022)	Gopherus flavomarginatus	GCF_025201925.1_rGopFla2.mat.asm	SAMN24199108	PRJNA794188	2022-09-15	reptiles
127	Mexican gopher tortoise (WGS:JAMKFD01 2022)	Gopherus flavomarginatus	GCA_025201965.1_rGopFla2.pat.asm	SAMN24199108	PRJNA794189	2022-09-08	reptiles
128	milkfish	Chanos chanos	GCF_902362185.1_fChaCha1.1	SAMEA5159473	PRJEB33882	2019-08-14	fish
129	monito del monte (mDroGli1 primary hap 2021)	Dromiciops gliroides	GCF_019393635.1_mDroGli1.pri	SAMN18857598	PRJNA728141	2021-08-03	mammals
130	mute swan (v2 2021)	Cygnus olor	GCF_009769625.2_bCygOlo1.pri.v2	SAMN12621369	PRJNA561960	2021-03-31	birds
131	Nelson's sparrow (bAmmNel1 primary hap 2023)	Ammospiza nelsoni	GCA_027579445.1_bAmmNel1.pri	SAMN28421656	PRJNA839456	2023-01-09	birds
132	New Caledonian crow	Corvus moneduloides	GCF_009650955.1_bCorMon1.pri	SAMN12368441	PRJNA560983	2019-11-14	birds
133	New Zealand spotty (refseq)	Notolabrus celidotus	GCF_009762535.1_fNotCel1.pri	SAMN12623201	PRJNA561956	2019-12-18	fish
134	northern goshawk (bAccGen1 v2 2022 genbank)	Accipiter gentilis	GCA_929443795.2_bAccGen1.2	SAMEA8235650	PRJEB50702	2022-10-27	birds
135	northern pike	Esox lucius	GCF_011004845.1_fEsoLuc1.pri	SAMN12623624	PRJNA561977	2020-03-05	fish
136	Norway rat BN7.2	Rattus norvegicus	GCF_015227675.2_mRatBN7.2	SAMN16261960	PRJNA662791	2020-11-10	mammals
137	orbiculate cardinalfish	Sphaeramia orbicularis	GCF_902148855.1_fSphaOr1.1	SAMEA4966328	PRJEB33177	2019-07-03	fish
138	pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 primary hap 2020)	Phyllostomus discolor	GCF_004126475.2_mPhyDis1.pri.v3	SAMN09948786	PRJNA489141	2020-05-12	mammals
139	Pallas's mastiff bat	Molossus molossus	GCF_014108415.1_mMolMol1.p	SAMN14734448	PRJNA628574	2020-08-07	mammals
140	pejerrey (fOdoBon6 haplotype 1 2023)	Odontesthes bonariensis	GCA_027942865.1_fOdoBon6.hap1	SAMN31802211	PRJNA916695	2023-01-24	fish
141	pejerrey (fOdoBon6 haplotype 2 2023)	Odontesthes bonariensis	GCA_027942885.1_fOdoBon6.hap2	SAMN31802211	PRJNA916696	2023-01-20	fish
142	peladilla (galaxoid fish 2021)	Aplochiton taeniatus	GCA_017639675.1_fAplTae1.pri	SAMN12623621	PRJNA561971	2021-03-30	fish
143	peregrine falcon (2022)	Falco peregrinus	GCA_023634155.1_bFalPer1.pri	SAMN28688290	PRJNA842834	2022-06-02	birds
144	pinecone soldierfish	Myripristis murdjan	GCF_902150065.1_fMyrMur1.1	SAMEA4872133	PRJEB33188	2019-07-03	fish
145	plains spadefoot toad (aSpeBom1 primary hap 2022)	Spea bombifrons	GCF_027358695.1_aSpeBom1.2.pri	SAMN28408467	PRJNA838345	2022-12-27	amphibians
146	platypus (Pmale09 v4 2020)	Ornithorhynchus anatinus	GCF_004115215.2_mOrnAna1.pri.v4	SAMN08537700	PRJNA489114	2020-11-06	mammals
147	plumbeous ibis (2021)	Theristicus caerulescens	GCA_020745775.1_bTheCae1.pri.cur	SAMN22550094	PRJNA774297	2021-11-05	birds
148	prehistoric monster fish	Thalassophryne amazonica	GCF_902500255.1_fThaAma1.1	SAMEA104129913	PRJEB34606	2019-09-30	fish
149	pygmy sperm whale (mKogBre1 haplotype 1 2022)	Kogia breviceps	GCA_026419965.1_mKogBre1_haplotype_1	SAMN31719513	PRJNA901930	2022-11-27	mammals
150	pygmy sperm whale (mKogBre1 haplotype 2 2022)	Kogia breviceps	GCA_026419985.1_mKogBre1_haplotype_2	SAMN31719513	PRJNA901931	2022-11-27	mammals
151	razorbill	Alca torda	GCA_008658365.1_bAlcTor1_primary	SAMN12292087	PRJNA554520	2019-10-10	birds
152	ring-tailed lemur (2021)	Lemur catta	GCF_020740605.2_mLemCat1.pri	SAMN12621102	PRJNA561949	2021-11-04	mammals
153	red deer (2021)	Cervus elaphus	GCF_910594005.1_mCerEla1.1	SAMEA7523520	PRJEB45838	2021-07-07	mammals
154	red-bellied piranha	Pygocentrus nattereri	GCF_015220715.1_fPygNat1.pri	SAMN12623623	PRJNA561975	2020-11-03	fish
155	red-crested turaco	Tauraco erythrolophus	GCA_009769465.1_bTauEry1.pri	SAMN12621036	PRJNA561947	2019-12-19	birds
156	red-fronted tinkerbird	Pogoniulus pusillus	GCA_015220805.1_bPogPus1.pri	SAMN15098508	PRJNA637953	2020-11-03	birds
157	red-legged seriema	Cariama cristata	GCA_009819825.1_bCarCri1.pri	SAMN12614807	PRJNA561892	2019-12-31	birds
158	reedfish (2021)	Erpetoichthys calabaricus	GCF_900747795.2_fErpCal1.3	SAMEA104026374	PRJEB31579	2021-07-07	fish
159	rifleman (2021)	Acanthisitta chloris	GCA_016904835.1_bAcaChl1.pri	SAMN16442762	PRJNA561954	2021-02-17	birds
160	river trout (v2 2021)	Salmo trutta	GCA_901001165.2_fSalTru1.2	SAMEA994732	PRJEB32115	2021-04-24	fish
161	rock gunnel (2021)	Pholis gunnellus	GCA_910591455.2_fPhoGun1.2	SAMEA7522838	PRJEB45449	2021-11-18	fish
162	rock ptarmigan (2022)	Lagopus muta	GCF_023343835.1_bLagMut1_primary	SAMN25144835	PRJNA836583	2022-05-12	birds
163	Saker falcon (2022)	Falco cherrug	GCA_023634085.1_bFalChe1.pri	SAMN28688204	PRJNA842831	2022-06-02	birds
164	saltmarsh sparrow (bAmmCau1 primary hap 2023)	Ammodramus caudacutus	GCA_027887145.1_bAmmCau1.pri	SAMN28421630	PRJNA839452	2023-01-18	birds
165	sand lizard	Lacerta agilis	GCF_009819535.1_rLacAgi1.pri	SAMN12629509	PRJNA562018	2019-12-31	reptiles
166	sea lamprey	Petromyzon marinus	GCF_010993605.1_kPetMar1.pri	SAMN12629506	PRJNA562011	2020-02-24	otherChordates
167	Siamese fighting fish (2020)	Betta splendens	GCF_900634795.3_fBetSpl5.3	SAMEA104381735	PRJEB30365	2020-08-25	fish
168	slow loris (mNycCou1 primary hap 2022)	Nycticebus coucang	GCF_027406575.1_mNycCou1.pri	SAMN28408555	PRJNA838348	2022-12-28	mammals
169	smalltooth sawfish (v2.1 2019 refseq)	Pristis pectinata	GCF_009764475.1_sPriPec2.1.pri	SAMN12629505	PRJNA562009	2019-12-19	sharks
170	South Island takahe (primary hap 2021)	Porphyrio hochstetteri	GCA_020800305.1_bPorHoc1.mat.Z.cur	SAMN22550412	PRJNA774331	2021-11-08	birds
171	southern bluefin tuna (2021)	Thunnus maccoyii	GCF_910596095.1_fThuMac1.1	SAMEA8654747	PRJEB46021	2021-07-07	fish
172	southern grasshopper mouse (2020)	Onychomys torridus	GCF_903995425.1_mOncTor1.1	SAMEA104026389	PRJEB39770	2020-08-21	mammals
173	southern tamandua (mTamTet1 primary hap 2022)	Tamandua tetradactyla	GCA_023851605.1_mTamTet1.pri	SAMN12612337	PRJNA561939	2022-06-22	mammals
174	southern two-toed sloth (mChoDid1 primary hap 2020)	Choloepus didactylus	GCF_015220235.1_mChoDid1.pri	SAMN12612024	PRJNA561937	2020-11-03	mammals
175	specked wood butterfly	Pararge aegeria	GCF_905163445.1_ilParAegt1.1	SAMEA7532732	PRJEB42039	2021-01-28	insects
176	steelblue widowfinch (merged hap OUT-0048 2022)	Vidua chalybeata	GCA_026979565.1_bVidCha1_merged_haplotype	SAMN12254000	PRJNA889055	2022-12-21	birds
177	steelblue widowfinch (purged dups hap OUT-0048 2022)	Vidua chalybeata	GCA_026979555.1_bVidCha1_purged_dups_haplotype	SAMN12254000	PRJNA889056	2022-12-16	birds
178	sterlet (fAciRut3.2 2022)	Acipenser ruthenus	GCA_902713435.2_fAciRut3.2_paternal_haplotype	SAMEA5572864	PRJEB35913	2022-02-01	fish
179	stone loach (2022)	Barbatula barbatula	GCA_947034865.1_fBarBar1.1	SAMEA11296540	PRJEB56420	2022-10-07	fish
180	striped catfish (fPanHyp1 primary hap 2022)	Pangasianodon hypophthalmus	GCF_027358585.1_fPanHyp1.pri	SAMN32348883	PRJNA914796	2022-12-28	fish
181	Suruca trogon (2021)	Trogon surrucura	GCA_020746105.1_bTroSur1.pri.cur	SAMN22550082	PRJNA774295	2021-11-05	birds
182	Swainson's thrush (v2 2020)	Catharus ustulatus	GCF_009819885.2_bCatUst1.pri.v2	SAMN12618602	PRJNA561933	2020-12-22	birds
183	swamp sparrow (bMelGeo1 primary hap 2023)	Melospiza georgiana	GCA_028018845.1_bMelGeo1.pri	SAMN22787412	PRJNA915609	2023-01-31	birds
184	tawny frogmouth (bPodStr1 primary hap 2023)	Podargus strigoides	GCA_028020825.1_bPodStr1.pri	SAMN31801959	PRJNA912327	2023-01-31	birds
185	thorny skate (v2 2020)	Amblyraja radiata	GCF_010909765.2_sAmbRad1.1.pri	SAMN09948523	PRJNA591369	2020-02-21	sharks
186	tiny Cayenne caecilian	Microcaecilia unicolor	GCF_901765095.1_aMicUni1.1	SAMEA104387962	PRJEB32737	2019-06-22	amphibians
187	torafugu (fTakRub1.3 2021 genbank)	Takifugu rubripes	GCA_901000725.3_fTakRub1.3	SAMEA104384834	PRJEB31988	2021-04-24	fish
188	tufted duck	Aythya fuligula	GCF_009819795.1_bAytFul2.pri	SAMN12621346	PRJNA561952	2019-12-31	birds
189	two-lined caecilian	Rhinatrema bivittatum	GCF_901001135.1_aRhiBiv1.1	SAMEA104387956	PRJEB32111	2019-06-02	amphibians
190	vaquita (mPhoSin1 2019)	Phocoena sinus	GCF_008692025.1_mPhoSin1.pri	SAMN12325353	PRJNA557831	2019-09-26	mammals
191	village indigobird (OUT-0048 2022)	Vidua chalybeata	GCF_026979565.1_bVidCha1_merged_haplotype	SAMN12254000	PRJNA889055	2022-12-21	birds
192	warty frogfish (2020)	Antennarius maculatus	GCA_013358685.1_fAntMac1.pri	SAMN12623626	PRJNA561983	2020-06-18	fish
193	yellowfin seabream	Acanthopagrus latus	GCF_904848185.1_fAcaLat1.1	SAMN16236878	PRJEB40700	2020-10-12	fish
194	Western terrestrial garter snake	Thamnophis elegans	GCF_009769535.1_rThaEle1.pri	SAMN12629499	PRJNA561996	2019-12-23	reptiles
195	whiskered treeswift (2021)	Hemiprocne comata	GCA_020745705.1_bHemCom1.pri.cur	SAMN22588383	PRJNA774831	2021-11-05	birds
196	white leghorn X broiler chicken (leghorn haplotype v2 2021)	Gallus gallus	GCF_016700215.2_bGalGal1.pat.whiteleghornlayer.GRCg7w	SAMN15960293	PRJNA660758	2021-10-01	birds
197	white-tailed eagle (bHalAlb1.1 2022)	Haliaeetus albicilla	GCA_947461875.1_bHalAlb1.1	SAMEA12857288	PRJEB57865	2022-12-06	birds
198	white-toothed pygmy shrew (mSunEtr1 primary hap 2022)	Suncus etruscus	GCF_024139225.1_mSunEtr1.pri.cur	SAMN28420931	PRJNA838699	2022-07-06	mammals
199	white-tufted-ear marmoset (mCalJac1 2021)	Callithrix jacchus	GCF_011100555.1_mCalJa1.2.pat.X	SAMN12368443	PRJNA597600	2021-04-28	mammals
200	whooping crane (bGruAme1 2023)	Grus americana	GCF_028858705.1_bGruAme1.mat	SAMN32775697	PRJNA924953	2023-02-24	birds
201	yellow-throated sandgrouse	Pterocles gutturalis	GCA_009769525.1_bPteGut1.pri	SAMN12623217	PRJNA561958	2019-12-23	birds
202	yellowfin tuna (2021)	Thunnus albacares	GCF_914725855.1_fThuAlb1.1	SAMEA8654749	PRJEB47267	2021-09-16	fish
203	zebra finch (refseq 2021 Blue55 female)	Taeniopygia guttata	GCF_003957565.2_bTaeGut1.4.pri	SAMN02981239	PRJNA489098	2021-05-04	birds
204	zebrafish (WGS:CAHPTA01 2020)	Danio rerio	GCA_903684865.1_fDreABH1.1	SAMEA4760846	PRJEB38589	2020-06-28	fish
205	zebrafish (WGS:CAHPTB02 2020)	Danio rerio	GCA_903684855.2_fDreTuH1.2	SAMEA4760849	PRJEB38588	2020-07-31	fish
206	zebrafish (WGS:CALUEM01 2022)	Danio rerio	GCA_944039275.1_fDanRer4.1	SAMEA14088276	PRJEB53407	2022-06-24	fish
207	zig-zag eel (v1.3 2021 genbank)	Mastacembelus armatus	GCA_900324485.3_fMasArm1.3	SAMEA104026378	PRJEB25769	2021-04-24	fish

Alternate sets of VGP assemblies					NCBI Refseq
Index pages:	primary assembly	alternate/haplotype	trio mat/pat	legacy/superseded	other NCBI Refseq assemblies
Assembly statistics:	primary assembly	alternate/haplotype	trio mat/pat	legacy/superseded	other NCBI Refseq assemblies
Track statistics:	primary assembly	alternate/haplotype	trio mat/pat	legacy/superseded	other NCBI Refseq assemblies