VGP - Vertebrate Genomes Project assembly hub

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This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of primary assemblies)

How to view the hub

Options:

  1. The links to the genome browser in the table below will attach that one specific assembly to the genome browser. This is most likely what you want. Alternatively, the entire set of assemblies can be attached as one group to the genome browser with the following links depending upon which of our mirror site browsers you prefer to use:
    attach all assemblies to selected site:   genome.ucsc.edu   genome-euro.ucsc.edu   genome-asia.ucsc.edu
  2. To manually attach all the assemblies in this hub to genome browsers that are not one of the three UCSC mirror sites:
    1. From the blue navigation bar, go to My Data -> Track Hubs
    2. Then select the My Hubs tab and enter this URL into the textbox:
      https://hgdownload.soe.ucsc.edu/hubs/VGP/hub.txt
    3. Once you have added the URL to the entry form, press the Add Hub button to add the hub.

After adding the hub, you will be redirected to the gateway page. The genome assemblies can be selected from the VGP Hub Assembly dropdown menu. Instead of adding all the assemblies in one collected group, use the individual view in browser in the table below.

See also: assembly statistics, track statistics <== additional information for these assemblies.


Listings:

  (from RepeatModeler masking)

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The class VGP link provides access to the VGP GenomeArk page for that genome.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in browser		 scientific name
and data download		 NCBI assembly BioSample BioProject assembly date,
source link		 class
VGP link
1 Abyssinian ground-hornbill Bucorvus abyssinicus GCA_009769605.1_bBucAby1.pri SAMN12614799 PRJNA561887 2019-12-23 birds
2 Aeolian wall lizard (rPodRaf1 primary hap 2022) Podarcis raffonei GCF_027172205.1_rPodRaf1.pri SAMN28455423 PRJNA839511 2022-12-27 reptiles
3 American flamingo Phoenicopterus ruber ruber GCA_009819775.1_bPhoRub2.pri SAMN12614931 PRJNA561888 2019-12-31 birds
4 American shad Alosa sapidissima GCF_018492685.1_fAloSap1.pri SAMN18857608 PRJNA728145 2021-05-25 fish
5 Anna's hummingbird Calypte anna GCA_003957555.2_bCalAnn1_v1.p SAMN02265252 PRJNA489139 2019-05-16 birds
6 Aristotle's catfish (2022) Silurus aristotelis GCA_946808225.1_fSilAri3.1 SAMEA12595289 PRJEB55686 2022-09-15 fish
7 Asian bonytongue Scleropages formosus GCF_900964775.1_fSclFor1.1 SAMEA4872123 PRJEB31995 2019-04-11 fish
8 Asiatic elephant (2022) Elephas maximus indicus GCF_024166365.1_mEleMax1_primary_haplotype SAMN29174328 PRJNA850184 2022-07-06 mammals
9 Atlantic cod Gadus morhua GCF_902167405.1_gadMor3.0 SAMEA5574046 PRJEB33455 2019-07-16 fish
10 Atlantic halibut (refseq) Hippoglossus hippoglossus GCF_009819705.1_fHipHip1.pri SAMN12629501 PRJNA562001 2019-12-31 fish
11 Atlantic horse mackerel (2021) Trachurus trachurus GCA_905171665.2_fTraTra1.2 SAMEA7524396 PRJEB42172 2021-11-26 fish
12 Australian echidna Tachyglossus aculeatus GCF_015852505.1_mTacAcu1.pri SAMN12634963 PRJNA607237 2020-12-09 mammals
13 banded archerfish Toxotes jaculatrix GCF_017976425.1_fToxJac2.pri SAMN18445299 PRJNA717046 2021-04-15 fish
14 barbel (2022) Barbus barbus GCA_936440315.1_fBarBab1.1 SAMEA13335783 PRJEB52077 2022-05-03 fish
15 barn swallow (bHirRus1 v3 primary hap 2021) Hirundo rustica GCA_015227805.3_bHirRus1.pri.v3 SAMN14675488 PRJNA636192 2021-11-30 birds
16 black-legged kittiwake (bRisTri1.mat 2023) Rissa tridactyla GCA_028501385.1_bRisTri1.mat.cur.20221130 SAMN32104255 PRJNA909854 2023-02-01 birds
17 black-legged kittiwake (bRisTri1.patW 2023) Rissa tridactyla GCA_028500815.1_bRisTri1.patW.cur.20221130 SAMN32104255 PRJNA909853 2023-02-09 birds
18 black rhinoceros (2021) Diceros bicornis minor GCA_020826845.1_mDicBic1.mat.cur SAMN22047685 PRJNA773944 2021-11-10 mammals
19 blackbelly eelpout (fLycPai1 haplotype 1 2023) Lycodopsis pacificus GCA_028021495.1_fLycPai1.hap1 SAMN32629383 PRJNA921713 2023-01-26 fish
20 blackbelly eelpout (fLycPai1 haplotype 2 2023) Lycodopsis pacificus GCA_028022725.1_fLycPai1.hap2 SAMN32629383 PRJNA921714 2023-01-31 fish
21 blackcap Sylvia atricapilla GCA_009819655.1_bSylAtr1.pri SAMN12369542 PRJNA558064 2019-12-31 birds
22 Blainville's beaked whale ( 2022) Mesoplodon densirostris GCA_025265405.1_mMesDen1_primary_haplotype SAMN29828597 PRJNA873668 2022-09-19 mammals
23 blue whale Balaenoptera musculus GCF_009873245.2_mBalMus1.pri.v3 SAMN12287136 PRJNA554522 2020-10-02 mammals
24 blunt-snouted clingfish (v2 2020 genbank) Gouania willdenowi GCA_900634775.2_fGouWil2.2 SAMEA104026382 PRJEB30359 2020-07-31 fish
25 Boeseman's rainbowfish Melanotaenia boesemani GCF_017639745.1_fMelBoe1.pri SAMN12623618 PRJNA561965 2021-03-30 fish
26 bonti-bonti (T.bonti 2022) Telmatherina bonti GCA_933228915.1_fTelBon1.1 SAMEA8592627 PRJEB51590 2022-03-23 fish
27 brown argus butterfly Aricia agestis GCF_905147365.1_ilAriAges1.1 SAMEA7523300 PRJEB41901 2021-01-28 insects
28 butterfish (2021 G10K) Scatophagus argus GCF_020382885.2_fScaArg1.pri SAMN12623616 PRJNA749579 2021-10-13 fish
29 California sea lion Zalophus californianus GCF_009762305.2_mZalCal1.pri.v2 SAMN12368149 PRJNA559673 2020-07-14 mammals
30 Canada lynx Lynx canadensis GCF_007474595.2_mLynCan4.pri.v2 SAMN09948483 PRJNA489107 2020-07-14 mammals
31 carmine bee-eater Merops nubicus GCA_009819595.1_bMerNub1.pri SAMN12621035 PRJNA561894 2019-12-31 birds
32 channel bull blenny Cottoperca gobio GCF_900634415.1_fCotGob3.1 SAMEA104242975 PRJEB30248 2019-02-06 fish
33 chicken (Cobb bGalGal5 primary hap 2022) Gallus gallus GCA_027408225.1_bGalGal5.pri SAMN28017485 PRJNA838370 2022-12-28 birds
34 chicken (Ross bGalGal4 primary hap 2023) Gallus gallus GCA_027557775.1_bGalGal4.pri SAMN28017486 PRJNA838369 2023-01-03 birds
35 chub mackerel (fScoJap1 primary hap 2022) Scomber japonicus GCF_027409825.1_fScoJap1.pri SAMN32224830 PRJNA912108 2022-12-28 fish
36 climbing perch (v1.3 2021) Anabas testudineus GCA_900324465.3_fAnaTes1.3 SAMEA104026376 PRJEB25768 2021-04-24 fish
37 common brushtail Trichosurus vulpecula GCF_011100635.1_mTriVul1.pri SAMN12629507 PRJNA562014 2020-03-10 mammals
38 common cuckoo (2021) Cuculus canorus GCA_017976375.1_bCucCan1.pri SAMN12629508 PRJNA562015 2021-04-15 birds
39 common myna (bArcTri1 primary hap 2023) Acridotheres tristis GCA_027559615.1_bAcrTri1.pri SAMN28454388 PRJNA839507 2023-01-09 birds
40 common pipistrelle (2020) Pipistrellus pipistrellus GCA_903992545.1_mPipPip1.1 SAMEA994724 PRJEB39564 2020-08-06 mammals
41 common swift (bApuApu2 2021 refseq) Apus apus GCF_020740795.1_bApuApu2.pri.cur SAMN22785356 PRJNA776336 2021-11-04 birds
42 common tern Sterna hirundo GCA_009819605.1_bSteHir1.pri SAMN12369541 PRJNA558062 2019-12-31 birds
43 common toad Bufo bufo GCF_905171765.1_aBufBuf1.1 SAMEA7521636 PRJEB42168 2021-01-28 amphibians
44 common yellowthroat Geothlypis trichas GCA_009764595.1_bGeoTri1.pri SAMN12631222 PRJNA589703 2019-12-19 birds
45 convict blenny (chichlid 2021) Pholidichthys leucotaenia GCA_020510985.1_fPhoLeu1.pri SAMN12623617 PRJNA749575 2021-10-15 fish
46 copperband butterflyfish Chelmon rostratus GCF_017976325.1_fCheRos1.pri SAMN12623620 PRJNA561969 2021-04-15 fish
47 cunner (2021) Tautogolabrus adspersus GCA_020745685.1_fTauAds1.pri.cur SAMN22589422 PRJNA774878 2021-11-05 fish
48 dark-edged splitfin (DD_20200921_A 2022) Girardinichthys multiradiatus GCF_021462225.1_DD_fGirMul_XY1 SAMN22242658 PRJNA768329 2022-02-24 fish
49 denticle herring (v2 2020) Denticeps clupeoides GCA_900700375.2_fDenClu1.2 SAMEA104129917 PRJEB31545 2020-07-31 fish
50 downy woodpecker (2020) Dryobates pubescens GCA_014839835.1_bDryPub1.pri SAMN12629497 PRJNA561991 2020-10-02 birds
51 East African grey crowned-crane Balearica regulorum gibbericeps GCA_011004875.1_bBalReg1.pri SAMN12615749 PRJNA561890 2020-03-05 birds
52 eastern happy (v3 2021) Astatotilapia calliptera GCA_900246225.5_fAstCal1.3 SAMEA104026430 PRJEB24325 2021-04-24 fish
53 Egyptian rousette Rousettus aegyptiacus GCF_014176215.1_mRouAeg1.p SAMN14734550 PRJNA628585 2020-08-07 mammals
54 electric eel Electrophorus electricus GCF_013358815.1_fEleEle1.pri SAMN12623625 PRJNA561981 2020-06-23 fish
55 emu (v2 ZJU1.0 2023) Dromaius novaehollandiae GCA_016128335.2_ZJU2.0 SAMN15183959 PRJNA638233 2023-01-13 birds
56 epaulette shark (sHemOce1 2021) Hemiscyllium ocellatum GCA_020745735.1_sHemOce1.pat.X.cur. SAMN22550098 PRJNA774310 2021-11-05 sharks
57 ermine Mustela erminea GCF_009829155.1_mMusErm1.Pri SAMN12611999 PRJNA561931 2020-01-03 mammals
58 Eurasian badger (2021) Meles meles GCA_922990625.1_mMelMel3.1_maternal_haplotype_uncurated SAMEA7524400 PRJEB49352 2021-12-18 mammals
59 Eurasian nightjar Caprimulgus europaeus GCA_907165065.1_bCapEur3.1 SAMEA7524394 PRJEB44540 2021-05-17 birds
60 Eurasian red squirrel Sciurus vulgaris GCA_902686455.1_mSciVul1.1 SAMEA994733 PRJEB35380 2019-11-26 mammals
61 Eurasian river otter (2020) Lutra lutra GCF_902655055.1_mLutLut1.2 SAMEA994731 PRJEB35339 2020-07-31 mammals
62 Eurasian water vole (2021) Arvicola amphibius GCF_903992535.2_mArvAmp1.2 SAMEA994740 PRJEB39550 2021-05-15 mammals
63 European common frog Rana temporaria GCF_905171775.1_aRanTem1.1 SAMEA7521635 PRJEB42171 2021-01-28 amphibians
64 European eel Anguilla anguilla GCF_013347855.1_fAngAng1.pri SAMN12623627 PRJNA561979 2020-06-18 fish
65 European golden plover Pluvialis apricaria GCA_017639485.1_bPluApr1.pri SAMN18353970 PRJNA715924 2021-03-30 birds
66 European plaice (primary hap 2022) Pleuronectes platessa GCF_947347685.1_fPlePla1.1 SAMEA13853390 PRJEB57577 2022-11-29 fish
67 European robin Erithacus rubecula GCA_903797595.2_bEriRub2.2 SAMEA4760689 PRJEB38658 2021-05-03 birds
68 European starfish Asterias rubens GCF_902459465.1_eAstRub1.3 SAMEA994741 PRJEB33974 2020-02-12 echinoderm
69 European turtle dove (v1.2 2021) Streptopelia turtur GCA_901699155.2_bStrTur1.2 SAMEA994735 PRJEB32724 2021-05-17 birds
70 European woodmouse (2022 refseq) Apodemus sylvaticus GCF_947179515.1_mApoSyl1.1 SAMEA7702024 PRJEB56948 2022-10-28 mammals
71 flier cichlid Archocentrus centrarchus GCF_007364275.1_fArcCen1 SAMN09948522 PRJNA489129 2019-08-01 fish
72 freshwater garfish (fXenCan1 2020) Xenentodon cancila GCA_014839995.1_fXenCan1.pri SAMN12623622 PRJNA561973 2020-10-02 fish
73 Gabon caecilian Geotrypetes seraphini GCF_902459505.1_aGeoSer1.1 SAMEA104387963 PRJEB33992 2019-08-18 amphibians
74 garden warbler Sylvia borin GCA_014839755.1_bSylBor1.pri SAMN12618613 PRJNA561945 2020-10-02 birds
75 gilthead seabream (v2 2021) Sparus aurata GCA_900880675.2_fSpaAur1.2 SAMEA104384835 PRJEB31901 2021-04-24 fish
76 golden eagle (2021) Aquila chrysaetos chrysaetos GCF_900496995.4_bAquChr1.4 SAMEA994725 PRJEB27699 2021-03-26 birds
77 golden spiny mouse (2020) Acomys russatus GCF_903995435.1_mAcoRus1.1 SAMEA104026431 PRJEB39768 2020-08-21 mammals
78 Goodes thornscrub tortoise Gopherus evgoodei GCF_007399415.2_rGopEvg1_v1.p SAMN03496275 PRJNA489103 2019-07-25 reptiles
79 gray squirrel (2020) Sciurus carolinensis GCF_902686445.1_mSciCar1.2 SAMEA994726 PRJEB35386 2020-07-31 mammals
80 gray wolf (2021) Canis lupus GCA_905319855.2_mCanLor1.2 SAMEA7532739 PRJEB43200 2021-03-26 mammals
81 great potoo Nyctibius grandis GCA_013368605.1_bNycGra1.pri SAMN12622411 PRJNA562020 2020-06-23 birds
82 great scallop Pecten maximus GCF_902652985.1_xPecMax1.1 SAMEA994736 PRJEB35330 2019-11-26 molluscs
83 great white shark Carcharodon carcharias GCF_017639515.1_sCarCar2.pri SAMN12629504 PRJNA562007 2021-03-30 sharks
84 greater horseshoe bat (v2 MPI-CBG 2019) Rhinolophus ferrumequinum GCF_004115265.2_mRhiFer1_v1.p SAMN09948510 PRJNA489106 2019-05-16 mammals
85 greater horseshoe bat (mRhiFer1 2020) Rhinolophus ferrumequinum GCA_014108255.1_mRhiFer1.p SAMN14734547 PRJNA628581 2020-08-13 mammals
86 greater pipefish Syngnathus acus GCF_901709675.1_fSynAcu1.2 SAMEA104381750 PRJEB32741 2020-07-31 fish
87 greater mouse-eared bat Myotis myotis GCF_014108235.1_mMyoMyo1.p SAMN14734277 PRJNA628559 2020-08-07 mammals
88 green sea turtle (v2 2021) Chelonia mydas GCF_015237465.2_rCheMyd1.pri.v2 SAMN12612360 PRJNA561941 2021-07-15 reptiles
89 gyrfalcon Falco rusticolus GCF_015220075.1_bFalRus1.pri SAMN12629496 PRJNA561988 2020-11-03 birds
90 Harpy eagle (bHarHar1 2022) Harpia harpyja GCF_026419915.1_bHarHar1_primary_haplotype SAMN31530492 PRJNA896141 2022-11-27 birds
91 Hawaiian crow (2021 refseq) Corvus hawaiiensis GCF_020740725.1_bCorHaw1.pri.cur SAMN22550278 PRJNA774314 2021-11-04 birds
92 honeycomb rockfish Sebastes umbrosus GCF_015220745.1_fSebUmb1.pri SAMN12629503 PRJNA562005 2020-11-03 fish
93 house finch (bHaeMex1 primary hap 2022) Haemorhous mexicanus GCA_027477595.1_bHaeMex1.pri SAMN28453576 PRJNA839499 2022-12-29 birds
94 human (mHomSap3 WGS:JACSEX01 2021) Homo sapiens GCA_016695395.2_mHomSap3.mat SAMN12568975 PRJNA562023 2021-01-19 mammals
95 Humboldt's penguin (bSphHub1 primary hap 2022) Spheniscus humboldti GCA_027474245.1_bSphHub1.pri SAMN28408465 PRJNA838343 2022-12-28 birds
96 hybrid cattle (Angus x Brahman F1 Angus haplotype 2018) Bos indicus x Bos taurus GCA_003369685.2_UOA_Angus_1 SAMN08473802 PRJNA432857 2018-11-30 mammals
97 hybrid cattle (Angus x Brahman F1 Brahman haplotype 2018) Bos indicus x Bos taurus GCF_003369695.1_UOA_Brahman_1 SAMN08473802 PRJNA432857 2018-11-30 mammals
98 Indian glassy fish (v2 2020) Parambassis ranga GCA_900634625.2_fParRan2.2 SAMEA4675621 PRJEB30257 2020-07-31 fish
99 Indo-Pacific tarpon Megalops cyprinoides GCF_013368585.1_fMegCyp1.pri SAMN12623619 PRJNA561967 2020-06-23 fish
100 jewelled blenny Salarias fasciatus GCF_902148845.1_fSalaFa1.1 SAMEA4966329 PRJEB33184 2019-07-03 fish
101 kagu (bRhyJub1 primary hap 2023) Rhynochetos jubatus GCA_027574665.1_bRhyJub1.pri SAMN31802033 PRJNA916495 2023-01-09 birds
102 kakapo Strigops habroptila GCF_004027225.2_bStrHab1.2.pri SAMN09948751 PRJNA489135 2020-03-04 birds
103 killer whale (2022) Orcinus orca GCF_937001465.1_mOrcOrc1.1 SAMEA8800229 PRJEB52131 2022-05-03 mammals
104 Korean giant-fin mudskipper (refseq) Periophthalmus magnuspinnatus GCF_009829125.1_fPerMag1.pri SAMN12629500 PRJNA561998 2020-01-03 fish
105 Kuhl's pipistrelle Pipistrellus kuhlii GCF_014108245.1_mPipKuh1.p SAMN14734388 PRJNA628567 2020-08-07 mammals
106 lammergeier (bGypBar2 primary hap 2023) Gypaetus barbatus GCA_028022735.1_bGypBar2.pri SAMN32256411 PRJNA912841 2023-01-31 birds
107 lance-tailed manakin Chiroxiphia lanceolata GCF_009829145.1_bChiLan1.pri SAMN12620979 PRJNA561943 2020-01-03 birds
108 lanner falcon (2022) Falco biarmicus GCA_023638135.1_bFalBia1.pri SAMN28688289 PRJNA842826 2022-06-02 birds
109 largescale foureyes (2020) Anableps anableps GCA_014839685.1_fAnaAna1.pri SAMN12623628 PRJNA561985 2020-10-02 fish
110 Lataste's viper (rVipLat1 2022) Vipera latastei GCA_024294585.1_rVipLat1.pri SAMN28408464 PRJNA838200 2022-07-20 reptiles
111 leatherback sea turtle (v4 2021 refseq G10K) Dermochelys coriacea GCF_009764565.3_rDerCor1.pri.v4 SAMN12629498 PRJNA561993 2021-08-25 reptiles
112 lesser Egyptian jerboa (2021) Jaculus jaculus GCF_020740685.1_mJacJac1.mat.Y.cur SAMN20391724 PRJNA773797 2021-11-04 mammals
113 lesser kestrel (v2 2021) Falco naumanni GCF_017639655.2_bFalNau1.pat SAMN16870685 PRJNA702666 2021-03-30 birds
114 lesser rhea (bPtePen1 primary hap 2023) Rhea pennata GCA_028389875.1_bPtePen1.pri SAMN32606345 PRJNA918801 2023-02-06 birds
115 lesser salmon catfish (fNeoGra1 primary hap 2023) Neoarius graeffei GCA_027579695.1_fNeoGra1.pri SAMN28453209 PRJNA839496 2023-01-09 fish
116 live sharksucker (v2 2021) Echeneis naucrates GCA_900963305.2_fEcheNa1.2 SAMEA4966390 PRJEB31992 2021-04-24 fish
117 long-tailed hermit (PSU5 primary hap 2022) Phaethornis superciliosus GCA_023637945.1_DD_ASM_B1 SAMN23532249 PRJNA785144 2022-06-01 birds
118 longspined bullhead (2021) Taurulus bubalis GCA_910589615.1_fTauBub2.1 SAMEA7522994 PRJEB45317 2021-07-07 fish
119 lumpfish (refseq) Cyclopterus lumpus GCF_009769545.1_fCycLum1.pri SAMN12629502 PRJNA562003 2019-12-23 fish
120 maguari stork (2021) Ciconia maguari GCA_017639555.1_bCicMag1.pri SAMN18353822 PRJNA715733 2021-03-30 birds
121 mallard (Pekin duck Z2 2020 Zhejiang U) Anas platyrhynchos GCF_015476345.1_ZJU1.0 SAMN15588841 PRJNA636121 2020-11-23 birds
122 meadow viper (2022) Vipera ursinii GCA_947247035.1_rVipUrs1.1 SAMEA12832258 PRJEB57183 2022-10-30 reptiles
123 Mexican gopher tortoise (WGS:JAMKFC01 2022) Gopherus flavomarginatus GCF_025201925.1_rGopFla2.mat.asm SAMN24199108 PRJNA794188 2022-09-15 reptiles
124 Mexican gopher tortoise (WGS:JAMKFD01 2022) Gopherus flavomarginatus GCA_025201965.1_rGopFla2.pat.asm SAMN24199108 PRJNA794189 2022-09-08 reptiles
125 milkfish Chanos chanos GCF_902362185.1_fChaCha1.1 SAMEA5159473 PRJEB33882 2019-08-14 fish
126 monito del monte (2021) Dromiciops gliroides GCF_019393635.1_mDroGli1.pri SAMN18857598 PRJNA728141 2021-08-03 mammals
127 mute swan (v2 2021) Cygnus olor GCF_009769625.2_bCygOlo1.pri.v2 SAMN12621369 PRJNA561960 2021-03-31 birds
128 Nelson's sparrow (bAmmNel1 primary hap 2023) Ammospiza nelsoni GCA_027579445.1_bAmmNel1.pri SAMN28421656 PRJNA839456 2023-01-09 birds
129 New Caledonian crow Corvus moneduloides GCF_009650955.1_bCorMon1.pri SAMN12368441 PRJNA560983 2019-11-14 birds
130 New Zealand spotty (refseq) Notolabrus celidotus GCF_009762535.1_fNotCel1.pri SAMN12623201 PRJNA561956 2019-12-18 fish
131 northern goshawk (bAccGen1 v2 2022 genbank) Accipiter gentilis GCA_929443795.2_bAccGen1.2 SAMEA8235650 PRJEB50702 2022-10-27 birds
132 northern pike Esox lucius GCF_011004845.1_fEsoLuc1.pri SAMN12623624 PRJNA561977 2020-03-05 fish
133 Norway rat BN7.2 Rattus norvegicus GCF_015227675.2_mRatBN7.2 SAMN16261960 PRJNA662791 2020-11-10 mammals
134 orbiculate cardinalfish Sphaeramia orbicularis GCF_902148855.1_fSphaOr1.1 SAMEA4966328 PRJEB33177 2019-07-03 fish
135 pale spear-nosed bat Phyllostomus discolor GCF_004126475.2_mPhyDis1.pri.v3 SAMN09948786 PRJNA489141 2020-05-12 mammals
136 Pallas's mastiff bat Molossus molossus GCF_014108415.1_mMolMol1.p SAMN14734448 PRJNA628574 2020-08-07 mammals
137 pejerrey (fOdoBon6 haplotype 1 2023) Odontesthes bonariensis GCA_027942865.1_fOdoBon6.hap1 SAMN31802211 PRJNA916695 2023-01-24 fish
138 pejerrey (fOdoBon6 haplotype 2 2023) Odontesthes bonariensis GCA_027942885.1_fOdoBon6.hap2 SAMN31802211 PRJNA916696 2023-01-20 fish
139 peladilla (galaxoid fish 2021) Aplochiton taeniatus GCA_017639675.1_fAplTae1.pri SAMN12623621 PRJNA561971 2021-03-30 fish
140 peregrine falcon (2022) Falco peregrinus GCA_023634155.1_bFalPer1.pri SAMN28688290 PRJNA842834 2022-06-02 birds
141 pinecone soldierfish Myripristis murdjan GCF_902150065.1_fMyrMur1.1 SAMEA4872133 PRJEB33188 2019-07-03 fish
142 plains spadefoot toad (aSpeBom1 primary hap 2022) Spea bombifrons GCF_027358695.1_aSpeBom1.2.pri SAMN28408467 PRJNA838345 2022-12-27 amphibians
143 platypus (v4 2020) Ornithorhynchus anatinus GCF_004115215.2_mOrnAna1.pri.v4 SAMN08537700 PRJNA489114 2020-11-06 mammals
144 plumbeous ibis (2021) Theristicus caerulescens GCA_020745775.1_bTheCae1.pri.cur SAMN22550094 PRJNA774297 2021-11-05 birds
145 prehistoric monster fish Thalassophryne amazonica GCF_902500255.1_fThaAma1.1 SAMEA104129913 PRJEB34606 2019-09-30 fish
146 pygmy sperm whale (mKogBre1 haplotype 1 2022) Kogia breviceps GCA_026419965.1_mKogBre1_haplotype_1 SAMN31719513 PRJNA901930 2022-11-27 mammals
147 pygmy sperm whale (mKogBre1 haplotype 2 2022) Kogia breviceps GCA_026419985.1_mKogBre1_haplotype_2 SAMN31719513 PRJNA901931 2022-11-27 mammals
148 razorbill Alca torda GCA_008658365.1_bAlcTor1_primary SAMN12292087 PRJNA554520 2019-10-10 birds
149 ring-tailed lemur (2021) Lemur catta GCF_020740605.2_mLemCat1.pri SAMN12621102 PRJNA561949 2021-11-04 mammals
150 red deer (2021) Cervus elaphus GCF_910594005.1_mCerEla1.1 SAMEA7523520 PRJEB45838 2021-07-07 mammals
151 red-bellied piranha Pygocentrus nattereri GCF_015220715.1_fPygNat1.pri SAMN12623623 PRJNA561975 2020-11-03 fish
152 red-crested turaco Tauraco erythrolophus GCA_009769465.1_bTauEry1.pri SAMN12621036 PRJNA561947 2019-12-19 birds
153 red-fronted tinkerbird Pogoniulus pusillus GCA_015220805.1_bPogPus1.pri SAMN15098508 PRJNA637953 2020-11-03 birds
154 red-legged seriema Cariama cristata GCA_009819825.1_bCarCri1.pri SAMN12614807 PRJNA561892 2019-12-31 birds
155 reedfish (2021) Erpetoichthys calabaricus GCF_900747795.2_fErpCal1.3 SAMEA104026374 PRJEB31579 2021-07-07 fish
156 rifleman (2021) Acanthisitta chloris GCA_016904835.1_bAcaChl1.pri SAMN16442762 PRJNA561954 2021-02-17 birds
157 river trout (v2 2021) Salmo trutta GCA_901001165.2_fSalTru1.2 SAMEA994732 PRJEB32115 2021-04-24 fish
158 rock gunnel (2021) Pholis gunnellus GCA_910591455.2_fPhoGun1.2 SAMEA7522838 PRJEB45449 2021-11-18 fish
159 rock ptarmigan (2022) Lagopus muta GCF_023343835.1_bLagMut1_primary SAMN25144835 PRJNA836583 2022-05-12 birds
160 Saker falcon (2022) Falco cherrug GCA_023634085.1_bFalChe1.pri SAMN28688204 PRJNA842831 2022-06-02 birds
161 saltmarsh sparrow (bAmmCau1 primary hap 2023) Ammodramus caudacutus GCA_027887145.1_bAmmCau1.pri SAMN28421630 PRJNA839452 2023-01-18 birds
162 sand lizard Lacerta agilis GCF_009819535.1_rLacAgi1.pri SAMN12629509 PRJNA562018 2019-12-31 reptiles
163 sea lamprey Petromyzon marinus GCF_010993605.1_kPetMar1.pri SAMN12629506 PRJNA562011 2020-02-24 otherChordates
164 Siamese fighting fish (2020) Betta splendens GCF_900634795.3_fBetSpl5.3 SAMEA104381735 PRJEB30365 2020-08-25 fish
165 slow loris (mNycCou1 primary hap 2022) Nycticebus coucang GCF_027406575.1_mNycCou1.pri SAMN28408555 PRJNA838348 2022-12-28 mammals
166 smalltooth sawfish (v2.1 2019 refseq) Pristis pectinata GCF_009764475.1_sPriPec2.1.pri SAMN12629505 PRJNA562009 2019-12-19 sharks
167 South Island takahe (primary hap 2021) Porphyrio hochstetteri GCA_020800305.1_bPorHoc1.mat.Z.cur SAMN22550412 PRJNA774331 2021-11-08 birds
168 southern bluefin tuna (2021) Thunnus maccoyii GCF_910596095.1_fThuMac1.1 SAMEA8654747 PRJEB46021 2021-07-07 fish
169 southern grasshopper mouse Onychomys torridus GCF_903995425.1_mOncTor1.1 SAMEA104026389 PRJEB39770 2020-08-21 mammals
170 southern tamandua (2022) Tamandua tetradactyla GCA_023851605.1_mTamTet1.pri SAMN12612337 PRJNA561939 2022-06-22 mammals
171 southern two-toed sloth Choloepus didactylus GCF_015220235.1_mChoDid1.pri SAMN12612024 PRJNA561937 2020-11-03 mammals
172 specked wood butterfly Pararge aegeria GCF_905163445.1_ilParAegt1.1 SAMEA7532732 PRJEB42039 2021-01-28 insects
173 steelblue widowfinch (merged hap OUT-0048 2022) Vidua chalybeata GCA_026979565.1_bVidCha1_merged_haplotype SAMN12254000 PRJNA889055 2022-12-21 birds
174 steelblue widowfinch (purged dups hap OUT-0048 2022) Vidua chalybeata GCA_026979555.1_bVidCha1_purged_dups_haplotype SAMN12254000 PRJNA889056 2022-12-16 birds
175 sterlet (fAciRut3.2 2022) Acipenser ruthenus GCA_902713435.2_fAciRut3.2_paternal_haplotype SAMEA5572864 PRJEB35913 2022-02-01 fish
176 stone loach (2022) Barbatula barbatula GCA_947034865.1_fBarBar1.1 SAMEA11296540 PRJEB56420 2022-10-07 fish
177 striped catfish (fPanHyp1 primary hap 2022) Pangasianodon hypophthalmus GCF_027358585.1_fPanHyp1.pri SAMN32348883 PRJNA914796 2022-12-28 fish
178 Suruca trogon (2021) Trogon surrucura GCA_020746105.1_bTroSur1.pri.cur SAMN22550082 PRJNA774295 2021-11-05 birds
179 Swainson's thrush (v2 2020) Catharus ustulatus GCF_009819885.2_bCatUst1.pri.v2 SAMN12618602 PRJNA561933 2020-12-22 birds
180 swamp sparrow (bMelGeo1 primary hap 2023) Melospiza georgiana GCA_028018845.1_bMelGeo1.pri SAMN22787412 PRJNA915609 2023-01-31 birds
181 tawny frogmouth (bPodStr1 primary hap 2023) Podargus strigoides GCA_028020825.1_bPodStr1.pri SAMN31801959 PRJNA912327 2023-01-31 birds
182 thorny skate (v2 2020) Amblyraja radiata GCF_010909765.2_sAmbRad1.1.pri SAMN09948523 PRJNA591369 2020-02-21 sharks
183 tiny Cayenne caecilian Microcaecilia unicolor GCF_901765095.1_aMicUni1.1 SAMEA104387962 PRJEB32737 2019-06-22 amphibians
184 torafugu (fTakRub1.3 2021 genbank) Takifugu rubripes GCA_901000725.3_fTakRub1.3 SAMEA104384834 PRJEB31988 2021-04-24 fish
185 tufted duck Aythya fuligula GCF_009819795.1_bAytFul2.pri SAMN12621346 PRJNA561952 2019-12-31 birds
186 two-lined caecilian Rhinatrema bivittatum GCF_901001135.1_aRhiBiv1.1 SAMEA104387956 PRJEB32111 2019-06-02 amphibians
187 vaquita Phocoena sinus GCF_008692025.1_mPhoSin1.pri SAMN12325353 PRJNA557831 2019-09-26 mammals
188 warty frogfish (2020) Antennarius maculatus GCA_013358685.1_fAntMac1.pri SAMN12623626 PRJNA561983 2020-06-18 fish
189 yellowfin seabream Acanthopagrus latus GCF_904848185.1_fAcaLat1.1 SAMN16236878 PRJEB40700 2020-10-12 fish
190 Western terrestrial garter snake Thamnophis elegans GCF_009769535.1_rThaEle1.pri SAMN12629499 PRJNA561996 2019-12-23 reptiles
191 whiskered treeswift (2021) Hemiprocne comata GCA_020745705.1_bHemCom1.pri.cur SAMN22588383 PRJNA774831 2021-11-05 birds
192 white leghorn X broiler chicken (leghorn haplotype v2 2021) Gallus gallus GCF_016700215.2_bGalGal1.pat.whiteleghornlayer.GRCg7w SAMN15960293 PRJNA660758 2021-10-01 birds
193 white-tailed eagle (bHalAlb1.1 2022) Haliaeetus albicilla GCA_947461875.1_bHalAlb1.1 SAMEA12857288 PRJEB57865 2022-12-06 birds
194 white-toothed pygmy shrew (mSunEtr1 2022) Suncus etruscus GCF_024139225.1_mSunEtr1.pri.cur SAMN28420931 PRJNA838699 2022-07-06 mammals
195 yellow-throated sandgrouse Pterocles gutturalis GCA_009769525.1_bPteGut1.pri SAMN12623217 PRJNA561958 2019-12-23 birds
196 yellowfin tuna (2021) Thunnus albacares GCF_914725855.1_fThuAlb1.1 SAMEA8654749 PRJEB47267 2021-09-16 fish
197 zebra finch (refseq 2021 Blue55 female) Taeniopygia guttata GCF_003957565.2_bTaeGut1.4.pri SAMN02981239 PRJNA489098 2021-05-04 birds
198 zebrafish (WGS:CAHPTA01 2020) Danio rerio GCA_903684865.1_fDreABH1.1 SAMEA4760846 PRJEB38589 2020-06-28 fish
199 zebrafish (WGS:CAHPTB02 2020) Danio rerio GCA_903684855.2_fDreTuH1.2 SAMEA4760849 PRJEB38588 2020-07-31 fish
200 zebrafish (WGS:CALUEM01 2022) Danio rerio GCA_944039275.1_fDanRer4.1 SAMEA14088276 PRJEB53407 2022-06-24 fish
201 zig-zag eel (v1.3 2021 genbank) Mastacembelus armatus GCA_900324485.3_fMasArm1.3 SAMEA104026378 PRJEB25769 2021-04-24 fish

Alternate sets of VGP assembliesNCBI Refseq
Index pages:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Assembly statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Track statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies