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Chromosome 2 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033005 NT_022221 NT_022139 NT_022270 NT_022194 NT_022327 NT_005334 NT_033008
NT_033000 NT_005214 NT_033002 NT_022227 NT_015926 NT_005204 NT_030589 NT_005367
NT_015120 NT_026239 NT_005389 NT_005399 NT_005375 NT_032985 NT_032982 NT_032996
NT_033007 NT_033006 NT_032984 NT_032999 NT_022354 NT_033004 NT_022184 NT_005322
NT_022143 NT_015805 NT_033003 NT_032992 NT_029235 NT_032994 NT_022300 NT_026970
NT_032987 NT_022171 NT_032997 NT_005429 NT_005224 NT_029895 NT_022240 NT_031762
NT_032990 NT_019306 NT_026982 NT_030595 NT_022222 NT_029927 NT_005079 NT_022135
NT_032991 NT_022140 NT_029911 NT_028068 NT_030590 NT_005058 NT_029926 NT_005129
NT_022172 NT_005273 NT_005435 NT_005151 NT_031761 NT_022154 NT_005343 NT_005332
NT_025652 NT_032998 NT_005265 NT_005031 NT_022339 NT_030600 NT_022197 NT_005483
NT_005062 NT_022155 NT_032995 NT_005190 NT_030603 NT_005417 NT_028103 NT_033001
NT_005037 NT_005229 NT_005370 NT_005034 NT_005078 NT_005486 NT_031748 NT_005337
NT_005403 NT_032986 NT_022115 NT_005414 NT_022315 NT_005120 NT_022173 NT_022388
NT_005416 NT_005472 NT_022250 NT_032981 NT_026250


  NT_005079
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005079AC1080591221401721        
S/G/Y/R/B/O NT_005079AC0170791222944493        
S/G/Y/R/B/O NT_005079AC0132771224425451        
S/G/Y/R/B/O NT_005079AC0205911225650903        
S/G/Y/R/B/O NT_005079AC0124511226247133        
S/G/Y/R/B/O NT_005079AC0132801228108343        
S/G/Y/R/B/O NT_005079AC0167481229838813        
S/G/Y/R/B/O NT_005079AC0684831231646573        
S/G/Y/R/B/O NT_005079AC0795861233742363AFMA286XG1  2134.451 AC013732
S/G/Y/R/B/O NT_005079AC0795861233742363AFMA286XG12138.30  1 AC013732
S/G/Y/R/B/O NT_005079AC0730881234680743        
S/G/Y/R/B/O NT_005079AC0190501235217873        
S/G/Y/R/B/O NT_005079AC1045991236729073        
S/G/Y/R/B/O NT_005079AC0798951236821133        
S/G/Y/R/B/O NT_005079AC0842081238314223        
S/G/Y/R/B/O NT_005079AC0797761239705523        
S/G/Y/R/B/O NT_005079AC0188651241675131        
S/G/Y/R/B/O NT_005079AC0188041241832423        
S/G/Y/R/B/O NT_005079AC0233471243887563        
S/G/Y/R/B/O NT_005079AC0231531245634113        
S/G/Y/R/B/O NT_005079AC1070661245975343        
S/G/Y/R/B/O NT_005079AC1073821247091303        
S/G/Y/R/B/O NT_005079AC0134741247117113        
S/G/Y/R/B/O NT_005079AC0679621249078983        
S/G/Y/R/B/O NT_005079AC1148041249794631        
S/G/Y/R/B/O NT_005079AC0132631249799011        
S/G/Y/R/B/O NT_005079AC0123061249819343        
S/G/Y/R/B/O NT_005079AC0060111251353513        
S/G/Y/R/B/O NT_005079AC0741141252840323        
S/G/Y/R/B/O NT_005079AC0109761254896303D2S95  2133.651AC068282, AC068282
S/G/Y/R/B/O NT_005079AC0682821256427221AFMB285YH5  2133.651 AC068282
S/G/Y/R/B/O NT_005079AC0682821256427221AFMB285YH52137.40  1 AC068282
S/G/Y/R/B/O NT_005079AC1109261256573381        
S/G/Y/R/B/O NT_005079AC0922071256621491        
S/G/Y/R/B/O NT_005079AC0271421256648411        
S/G/Y/R/B/O NT_005079AC0125081258220403        
S/G/Y/R/B/O NT_005079AC0974491260060073        
S/G/Y/R/B/O NT_005079 - GATA62H05  2125.751AC079762, AC079762
S/G/Y/R/B/O NT_005079 - GATA167A05  2127.231AC023659, AC093901, AC023659, AC093901
S/G/Y/R/B/O NT_005079 - AFM116XE5  2128.411AC012365, AC012365
S/G/Y/R/B/O NT_005079 - AFMB039ZH1  2128.411AC016673, AC016673
S/G/Y/R/B/O NT_005079 - AFMA282VD5  2129.221AC017033, AC017033, AC019078
S/G/Y/R/B/O NT_005079 - AFMC015WB5  2129.221AC114732, AC114732
S/G/Y/R/B/O NT_005079 - AFM324VG1  2129.221AC114732, AC114732
S/G/Y/R/B/O NT_005079 - AFMB280XG5  2129.791AC016764, AC016764
S/G/Y/R/B/O NT_005079 - AFMB053YB9  2129.791AC016764, AC016764
S/G/Y/R/B/O NT_005079 - AFM191VG11  2129.791AC017033, AC017033, AC019078
S/G/Y/R/B/O NT_005079 - AFMA305ZC1  2130.371AC011246, AC011246
S/G/Y/R/B/O NT_005079 - AFM281YD5  2130.371AC018737, AC016063, AC018737
S/G/Y/R/B/O NT_005079 - AFM092YE9  2130.370  


  NT_005079 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005079 - GGAT1C4  2130.371AC011246, AC011246
S/G/Y/R/B/O NT_005079 - AFM016YC5  2130.370  
S/G/Y/R/B/O NT_005079 - UT992  2131.510AC013457, AC013457
S/G/Y/R/B/O NT_005079 - GATA135B08  2131.511AC073632, AC073632
S/G/Y/R/B/O NT_005079 - AFM289XB1  2131.511AC108219, AC108219
S/G/Y/R/B/O NT_005079 - ATA10H07  2131.511AC064859, AC064859
S/G/Y/R/B/O NT_005079 - GATA27A12  2132.581AC008275, AC008275
S/G/Y/R/B/O NT_005079 - AFM319TC9  2132.581AC097499, AC097499
S/G/Y/R/B/O NT_005079 - AFM249WF1  2132.581AC008275, AC008275
S/G/Y/R/B/O NT_005079 - UT5135  2132.581AC009956, AC096660, AC108689, AC009956, AC096660, AC108689
S/G/Y/R/B/O NT_005079 - UT502  2132.581AC010901, AC074362, AC010901, AC074362
S/G/Y/R/B/O NT_005079 - UT852  2132.580  
S/G/Y/R/B/O NT_005079 - AFM323WC5  2132.581AC009956, AC009956
S/G/Y/R/B/O NT_005079 - UT7454  2132.581AC104842, AC104842