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  Chromosome 2 - Genetic Maps - Single Contig
 

Chromosome 2 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033005 NT_022221 NT_022139 NT_022270 NT_022194 NT_022327 NT_005334 NT_033008
NT_033000 NT_005214 NT_033002 NT_022227 NT_015926 NT_005204 NT_030589 NT_005367
NT_015120 NT_026239 NT_005389 NT_005399 NT_005375 NT_032985 NT_032982 NT_032996
NT_033007 NT_033006 NT_032984 NT_032999 NT_022354 NT_033004 NT_022184 NT_005322
NT_022143 NT_015805 NT_033003 NT_032992 NT_029235 NT_032994 NT_022300 NT_026970
NT_032987 NT_022171 NT_032997 NT_005429 NT_005224 NT_029895 NT_022240 NT_031762
NT_032990 NT_019306 NT_026982 NT_030595 NT_022222 NT_029927 NT_005079 NT_022135
NT_032991 NT_022140 NT_029911 NT_028068 NT_030590 NT_005058 NT_029926 NT_005129
NT_022172 NT_005273 NT_005435 NT_005151 NT_031761 NT_022154 NT_005343 NT_005332
NT_025652 NT_032998 NT_005265 NT_005031 NT_022339 NT_030600 NT_022197 NT_005483
NT_005062 NT_022155 NT_032995 NT_005190 NT_030603 NT_005417 NT_028103 NT_033001
NT_005037 NT_005229 NT_005370 NT_005034 NT_005078 NT_005486 NT_031748 NT_005337
NT_005403 NT_032986 NT_022115 NT_005414 NT_022315 NT_005120 NT_022173 NT_022388
NT_005416 NT_005472 NT_022250 NT_032981 NT_026250


  NT_005403
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005403AC0740192221467803GATA6E08  2231.271 AC074019
S/G/Y/R/B/O NT_005403AC0094102223466573AFMA196VD12238.202231.272 AC009410, AC083997
S/G/Y/R/B/O NT_005403AC0120702223906663        
S/G/Y/R/B/O NT_005403AC0739932225402423        
S/G/Y/R/B/O NT_005403AC0738852225770273        
S/G/Y/R/B/O NT_005403AC0076772227043303AFM302VH92238.302231.271 AC007677
S/G/Y/R/B/O NT_005403AC0063682228603553        
S/G/Y/R/B/O NT_005403AC0063752230683163AFMA283YB12239.002231.811 AC006375, AC079392
S/G/Y/R/B/O NT_005403AC0077482232191743AFMA289YE12239.002231.811 AC007748
S/G/Y/R/B/O NT_005403AC0077482232302503UT506  2231.271 AC007748
S/G/Y/R/B/O NT_005403AC0082732233364723AFMB329WE92239.502232.361 AC008273
S/G/Y/R/B/O NT_005403AC0075592233847813        
S/G/Y/R/B/O NT_005403AC0933842235421813AFM277WG92240.102232.901 AC093384
S/G/Y/R/B/O NT_005403AC1053802236419963        
S/G/Y/R/B/O NT_005403AC0099732236502823AFM361TA52240.202232.901 AC009973
S/G/Y/R/B/O NT_005403AC0931712238758333AFMC004XH52240.902233.621 AC093171
S/G/Y/R/B/O NT_005403AC0099502239631203        
S/G/Y/R/B/O NT_005403AC0099492241392263AFM248WC52242.402235.071AC079002, AC009949, AC079002
S/G/Y/R/B/O NT_005403AC0099492241859513UT432  2235.071AC079002, AC009949, AC079002
S/G/Y/R/B/O NT_005403AC0101492242711253        
S/G/Y/R/B/O NT_005403AC0988232244430573        
S/G/Y/R/B/O NT_005403AC0840312245586043AFM324VC92242.402235.071 AC084031
S/G/Y/R/B/O NT_005403AC0125072246190233        
S/G/Y/R/B/O NT_005403AC0925342247827273        
S/G/Y/R/B/O NT_005403AC1053442248140621        
S/G/Y/R/B/O NT_005403AC0094072248451153        
S/G/Y/R/B/O NT_005403AC0187382251722903GATA12H10  2236.701 AC018738, AC019096, AC074185
S/G/Y/R/B/O NT_005403AC0187382251846033AFMB298WE92244.002236.701 AC018738, AC074185
S/G/Y/R/B/O NT_005403AC0187382252034013AFMA217YF92244.002236.701 AC018738, AC074185
S/G/Y/R/B/O NT_005403AC0171042252242133        
S/G/Y/R/B/O NT_005403AC1046342253910931        
S/G/Y/R/B/O NT_005403AC1085112254159643UT8067  2240.791 AC108511
S/G/Y/R/B/O NT_005403AC1068762255250671AFM269YD92250.002242.171 AC106876
S/G/Y/R/B/O NT_005403AC0166922256213333AFMA154YE12248.402242.171 AC016692
S/G/Y/R/B/O NT_005403AC0166922256611593AFM259YC92248.302240.791 AC016692
S/G/Y/R/B/O NT_005403AC0648522256993553        
S/G/Y/R/B/O NT_005403AC0732542259243893AFM333WC52245.702238.331 AC073254
S/G/Y/R/B/O NT_005403AC0933832259316643        
S/G/Y/R/B/O NT_005403AC0921652259336583        
S/G/Y/R/B/O NT_005403AC0681342260316783        
S/G/Y/R/B/O NT_005403AC0933742262107463        
S/G/Y/R/B/O NT_005403AF3122252263174413        
S/G/Y/R/B/O NT_005403AC0191302263838953        
S/G/Y/R/B/O NT_005403AC1054612265000301        
S/G/Y/R/B/O NT_005403AC0974832265304333        
S/G/Y/R/B/O NT_005403AC0210162266368683GC  479.691 AC021016
S/G/Y/R/B/O NT_005403AC0738382268186203        
S/G/Y/R/B/O NT_005403AC0125102269276233        
S/G/Y/R/B/O NT_005403AC0798102270326403        
S/G/Y/R/B/O NT_005403AC0099742270366563        


  NT_005403 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005403AF3159432272649633AFMB018XB52223.902216.311AC073128, AC073128, AF315943
S/G/Y/R/B/O NT_005403AF3159432272736883GATA3F05  2216.311AC073128, AC027416, AC073128, AF315943
S/G/Y/R/B/O NT_005403AC0731282272757191        
S/G/Y/R/B/O NT_005403AC0974682272928903        
S/G/Y/R/B/O NT_005403AC0205752274626313        
S/G/Y/R/B/O NT_005403AC0689462274801701        
S/G/Y/R/B/O NT_005403AC1148032276504301        
S/G/Y/R/B/O NT_005403AC0608202277100101        
S/G/Y/R/B/O NT_005403AC0134352277191503        
S/G/Y/R/B/O NT_005403AC0682182278330281        
S/G/Y/R/B/O NT_005403AC0734762278334331        
S/G/Y/R/B/O NT_005403AC0240092281080731        
S/G/Y/R/B/O NT_005403AC0409912281130631        
S/G/Y/R/B/O NT_005403AC0535032281499113AFMA357WC9  2215.781AC060820, AC053503, AC060820
S/G/Y/R/B/O NT_005403AC0535032281499113AFMA357WC92223.10  1AC060820, AC053503, AC060820
S/G/Y/R/B/O NT_005403AC0099552283095463        
S/G/Y/R/B/O NT_005403AC0095022286149973AFMA109WG52225.602218.451 AC009502
S/G/Y/R/B/O NT_005403AC0082812287079833AFM234WA92225.602218.451 AC008281, AC037440, AC093688
S/G/Y/R/B/O NT_005403AC0093102287702223        
S/G/Y/R/B/O NT_005403AC0930832288614483AFMA050YE52225.602218.451 AC093083
S/G/Y/R/B/O NT_005403AC0930832288962343AFM077YC52225.602218.451 AC093083
S/G/Y/R/B/O NT_005403AC1147652289556111        
S/G/Y/R/B/O NT_005403AC0192112291355283UT1459  2218.451 AC019211
S/G/Y/R/B/O NT_005403AC0190512292659543GAAT1C10  2218.451 AC019051
S/G/Y/R/B/O NT_005403AC0796072292980213        
S/G/Y/R/B/O NT_005403AC0679562293468543        
S/G/Y/R/B/O NT_005403AC1070782295165621        
S/G/Y/R/B/O NT_005403AC0938432295961933AFM284VD92226.902219.521 AC093843
S/G/Y/R/B/O NT_005403AC0192082297413793AFM319ZF92228.202220.591 AC019208
S/G/Y/R/B/O NT_005403AC1060422298175893        
S/G/Y/R/B/O NT_005403AC0931602299345173AFM119XC72228.802221.131 AC093160
S/G/Y/R/B/O NT_005403AC0112332299441973AFMA061YF92228.202221.131 AC011233
S/G/Y/R/B/O NT_005403AC0112332300307953AFMA104YD52228.802221.131 AC011233, AC036215
S/G/Y/R/B/O NT_005403AC0108992300934273        
S/G/Y/R/B/O NT_005403AC0798342303034593        
S/G/Y/R/B/O NT_005403AC0684892304100803        
S/G/Y/R/B/O NT_005403AC0092242304328603        
S/G/Y/R/B/O NT_005403AC0092312306074483GAAT1B02  2221.131 AC009231
S/G/Y/R/B/O NT_005403AC0092312306207223AFM277VB92228.802221.131 AC009231
S/G/Y/R/B/O NT_005403AC0093022307028403        
S/G/Y/R/B/O NT_005403AC0125912309188883MFD128B  2222.201 AC012591
S/G/Y/R/B/O NT_005403AC0125912309948293AFMA224XD52229.602222.201 AC012591, U12259
S/G/Y/R/B/O NT_005403AC0109802311861563AFM079ZA52229.602222.201AC112718, AC010980, AC112718
S/G/Y/R/B/O NT_005403AC1127182312177131AFM261YB12229.602222.201 AC112718
S/G/Y/R/B/O NT_005403AC0974612312310283        
S/G/Y/R/B/O NT_005403AC1047722314008563        
S/G/Y/R/B/O NT_005403AC0167122316133513AFM301WG12230.102222.731 AC016712
S/G/Y/R/B/O NT_005403AC0167122316482483AFM150XF22230.102222.731 AC016712
S/G/Y/R/B/O NT_005403AC0134762316631303        
S/G/Y/R/B/O NT_005403AC0170142318034323        


  NT_005403 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005403AC0933802319837983        
S/G/Y/R/B/O NT_005403AC0680352320874893UT1340  2224.331 AC068035
S/G/Y/R/B/O NT_005403AC0791202321270873        
S/G/Y/R/B/O NT_005403AC0134482322296343        
S/G/Y/R/B/O NT_005403AC0125122324125243AFMC010XC12229.602222.201 AC012512
S/G/Y/R/B/O NT_005403AC0938842325527743AFM165ZH82231.702224.331 AC016701, AC093884
S/G/Y/R/B/O NT_005403AC0938842326144993AFMA337ZD12231.802224.331 AC016701, AC093884
S/G/Y/R/B/O NT_005403AC0736412326395343        
S/G/Y/R/B/O NT_005403AC0191092328352433        
S/G/Y/R/B/O NT_005403AC1048022330003943        
S/G/Y/R/B/O NT_005403AC0080722332026923AFM296VH92233.102225.671 AC079836
S/G/Y/R/B/O NT_005403AC0730522332326793        
S/G/Y/R/B/O NT_005403AC0926792333577493        
S/G/Y/R/B/O NT_005403AC1048302334463701        
S/G/Y/R/B/O NT_005403AC0117392336374423AFM294YF52233.102225.671 AC011739
S/G/Y/R/B/O NT_005403AC0938062336818903        
S/G/Y/R/B/O NT_005403AC0170952338537973AFM127XB42233.102225.671 AC017095
S/G/Y/R/B/O NT_005403AC0159742339494113        
S/G/Y/R/B/O NT_005403AC0679612341455103        
S/G/Y/R/B/O NT_005403AC1068902342493943        
S/G/Y/R/B/O NT_005403AC0192312343943043AFMA240XH12234.502227.001 AC019231
S/G/Y/R/B/O NT_005403AC0167172345860773UT709  2227.001 AC016717
S/G/Y/R/B/O NT_005403AC0681382346744133        
S/G/Y/R/B/O NT_005403AC0693832349474083GATA23D03  2227.001 AC069383
S/G/Y/R/B/O NT_005403AC0931732349509483        
S/G/Y/R/B/O NT_005403AC0620152349604843        
S/G/Y/R/B/O NT_005403AC0800022351027113        
S/G/Y/R/B/O NT_005403AC1082032352108693AFMB354WE52234.502227.001 AC108203
S/G/Y/R/B/O NT_005403AC0937842352670453AFMA046WE12235.002227.541 AC093784
S/G/Y/R/B/O NT_005403AC0794022354148653        
S/G/Y/R/B/O NT_005403AC0797692354998383        
S/G/Y/R/B/O NT_005403AC0107352355645683AFMA090ZH52236.102228.611 AC010735
S/G/Y/R/B/O NT_005403AC0731492357279483ATA24E12  2228.011 AC073149
S/G/Y/R/B/O NT_005403AC0731492357414753AFM218ZG32236.102228.611 AC073149
S/G/Y/R/B/O NT_005403AC0792352359783883AFMA121ZA92236.202229.141AC107069, AC079235, AC107069
S/G/Y/R/B/O NT_005403AC1070692360231951        
S/G/Y/R/B/O NT_005403AC0976622361762701AFMA140YG92236.202229.141 AC097662
S/G/Y/R/B/O NT_005403AC0120332362606231        
S/G/Y/R/B/O NT_005403AC0790022363003351        
S/G/Y/R/B/O NT_005403AC0222952363060851        
S/G/Y/R/B/O NT_005403 - GATA43F06  2231.271AC026118, AC026118
S/G/Y/R/B/O NT_005403 - UT501  2231.270AC009410, AC009410
S/G/Y/R/B/O NT_005403 - UT5193  2231.270