Chromosome 2 - Genetic Maps - Single Contig

Chromosome 2 - Genetic Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_005204

Links	Contig	Accession	Chr Start	Phs	STS Marker	Gen Chr	Genethon	Marsh Chr	Marshfield	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005204	AC012074	24638065	1	AFM193YB4	2	48.50	2	45.30	1		AC012074
S/G/Y/R/B/O	NT_005204	AC012074	25578203	1	AFMB346YE5	2	49.00	2	45.83	1	AC104699,	AC012074, AC104699
S/G/Y/R/B/O	NT_005204	AC012457	24731302	3	AFM242YD8	2	48.50	2	45.30	1		AC012457
S/G/Y/R/B/O	NT_005204	AC013267	24805886	3
S/G/Y/R/B/O	NT_005204	AC012073	24990276	3	AFMA136WH9	2	48.50	2	46.37	1		AC012073
S/G/Y/R/B/O	NT_005204	AC012073	25061490	3	AFMA134VF1	2	48.00	2	45.30	1		AC012073
S/G/Y/R/B/O	NT_005204	AC013459	25127856	3
S/G/Y/R/B/O	NT_005204	AC093798	25389697	3	AFMA309XD1	2	48.50	2	45.30	1		AC093798
S/G/Y/R/B/O	NT_005204	AC078975	27977402	1	MFD54			2	45.83	1		AC078975
S/G/Y/R/B/O	NT_005204	AC104699	25586576	1
S/G/Y/R/B/O	NT_005204	AC019144	25666200	3
S/G/Y/R/B/O	NT_005204	AC010150	25909138	3	AFMA052YB5	2	49.50	2	46.37	1		AC010150
S/G/Y/R/B/O	NT_005204	AC064847	25984096	3
S/G/Y/R/B/O	NT_005204	AC013449	26119024	3
S/G/Y/R/B/O	NT_005204	AC011742	26418890	3	AFM217XH8	2	50.10	2	45.83	1		AC011742
S/G/Y/R/B/O	NT_005204	AC010896	26525855	3	AFMA305WH9	2	50.10	2	46.37	1	AC093378,	AC010896, AC093378
S/G/Y/R/B/O	NT_005204	AC093378	26608050	1
S/G/Y/R/B/O	NT_005204	AC108070	26698054	1	AFM350YE1	2	50.00	2	46.37	1		AC108070
S/G/Y/R/B/O	NT_005204	AC074388	26667119	1
S/G/Y/R/B/O	NT_005204	AC015977	26809642	3	AFM254VC9	2	50.10	2	46.90	1	AC074388,	AC074388
S/G/Y/R/B/O	NT_005204	AC011740	26937704	3
S/G/Y/R/B/O	NT_005204	AC013472	27106495	3
S/G/Y/R/B/O	NT_005204	AC013403	27273673	3	AFMB009XF1	2	50.10	2	46.90	1		AC013403
S/G/Y/R/B/O	NT_005204	AC013413	27411683	3
S/G/Y/R/B/O	NT_005204	AC109828	27528530	1
S/G/Y/R/B/O	NT_005204	AC074117	27542862	3
S/G/Y/R/B/O	NT_005204	AC009427	27738742	1
S/G/Y/R/B/O	NT_005204	AC109829	27741079	1
S/G/Y/R/B/O	NT_005204	AC074091	27768656	3
S/G/Y/R/B/O	NT_005204	AC110084	27972809	1
S/G/Y/R/B/O	NT_005204	AC009228	27984547	3
S/G/Y/R/B/O	NT_005204	AC008073	28157899	3
S/G/Y/R/B/O	NT_005204	AC104665	28322559	3
S/G/Y/R/B/O	NT_005204	AC066692	28363508	3
S/G/Y/R/B/O	NT_005204	AC079924	28510690	3
S/G/Y/R/B/O	NT_005204	AC009242	28565772	3
S/G/Y/R/B/O	NT_005204	AC011239	28833678	3	AFM302YF5	2	48.50	2	45.83	1		AC011239
S/G/Y/R/B/O	NT_005204	AC012506	28911842	3
S/G/Y/R/B/O	NT_005204	AC110925	29107145	3
S/G/Y/R/B/O	NT_005204	AC018467	29247395	3	GAAT1F2			2	45.83	1		AC018467
S/G/Y/R/B/O	NT_005204	AC016768	29370098	3	AFMA301XC1	2	46.20	2	44.09	1		AC016768
S/G/Y/R/B/O	NT_005204	AC104807	29447201	3
S/G/Y/R/B/O	NT_005204	AC021171	29588565	3
S/G/Y/R/B/O	NT_005204	AC096552	29843027	3	MFD307			2	45.83	1		AC092842, AC096552
S/G/Y/R/B/O	NT_005204	AC093690	29868626	3
S/G/Y/R/B/O	NT_005204	AC104695	30108421	3	AFM234YA9	2	50.70	2	47.43	1		AC097718, AC104695
S/G/Y/R/B/O	NT_005204	AC104695	30111318	3	AFM303YC1	2	50.70	2	47.97	1		AC097718, AC104695
S/G/Y/R/B/O	NT_005204	AC104695	30124624	3	AFM303YF1	2	50.70	2	47.43	1		AC097718, AC104695
S/G/Y/R/B/O	NT_005204	AC104695	30162921	3	AFMB082ZD5	2	50.70	2	47.43	1		AC097718, AC104695
S/G/Y/R/B/O	NT_005204	AC093164	30223758	3

NT_005204 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	Gen Chr	Genethon	Marsh Chr	Marshfield	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005204	AC074011	30374314	3	AFMB357ZF5	2	51.30	2	47.97	1		AC022076, AC074011
S/G/Y/R/B/O	NT_005204	AC092164	30456129	3	ATA3G09			2	47.97	1		AC022076, AC092164
S/G/Y/R/B/O	NT_005204	AC097724	30530834	3	AFM347YA5	2	51.20	2	47.97	1		AC097724
S/G/Y/R/B/O	NT_005204	AC097720	30557259	3
S/G/Y/R/B/O	NT_005204	AC105398	30718784	3	AFM240YF8	2	51.20	2	47.97	1		AC105398
S/G/Y/R/B/O	NT_005204	AC093593	30861378	3
S/G/Y/R/B/O	NT_005204	AC074096	30981740	3	GATA8F07			2	47.97	1		AC074096
S/G/Y/R/B/O	NT_005204	AC074096	31097181	3	AFM198WC5	2	51.90			1	AC106899,	AC074096, AC106899
S/G/Y/R/B/O	NT_005204	AC074096	31097181	3	AFM198WC5			2	49.04	1	AC106899,	AC074096, AC106899
S/G/Y/R/B/O	NT_005204	AC106899	31105366	1
S/G/Y/R/B/O	NT_005204		-		AFMA082XE1	2	51.80			0
S/G/Y/R/B/O	NT_005204		-		AFM260XC5			2	39.93	1	AC019055,	AC019055
S/G/Y/R/B/O	NT_005204		-		AFM234XE3			2	39.93	1	AC018741,	AC016391, AC018741
S/G/Y/R/B/O	NT_005204		-		AFMA341YE1			2	39.93	1	AC010096,	AC010096
S/G/Y/R/B/O	NT_005204		-		AFM331WE9			2	40.47	1	AC021877, AC098828, AC116171,	AC021877, AC098828, AC116171
S/G/Y/R/B/O	NT_005204		-		AFMA108YF1			2	40.47	1	AC007041, AC041029, AC104792,	AC007041, AC041029, AC104792
S/G/Y/R/B/O	NT_005204		-		AFMA238XC9			2	41.57	1	AC011752,	AC011752
S/G/Y/R/B/O	NT_005204		-		AFMA064WH1			2	42.65	1	AC112228,	AC112228
S/G/Y/R/B/O	NT_005204		-		ATA9E06			2	42.65	1	AC018741,	AC016391, AC018741, AC069283
S/G/Y/R/B/O	NT_005204		-		MFD292			2	42.65	1	AC012361,	AC012361
S/G/Y/R/B/O	NT_005204		-		MFD270			2	44.09	1	AC096570,	AC096570