Chromosome 2 - Genetic Maps - Single Contig

Chromosome 2 - Genetic Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_015926

Links	Contig	Accession	Chr Start	Phs	STS Marker	Gen Chr	Genethon	Marsh Chr	Marshfield	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_015926	AC009829	21749773	1
S/G/Y/R/B/O	NT_015926	AC062006	21750994	1
S/G/Y/R/B/O	NT_015926	AC010745	21890720	3	AFM249TH9			2	35.98	1		AC010745
S/G/Y/R/B/O	NT_015926	AC010745	21890720	3	AFM249TH9	2	38.00			1		AC010745
S/G/Y/R/B/O	NT_015926	AC010880	21988457	3
S/G/Y/R/B/O	NT_015926	AC104623	22103688	3
S/G/Y/R/B/O	NT_015926	AC008164	22264673	3	AFM338YC1			2	36.72	1		AC008164
S/G/Y/R/B/O	NT_015926	AC008164	22264673	3	AFM338YC1	2	39.10			1		AC008164
S/G/Y/R/B/O	NT_015926	AC008164	22282890	3	UT868			2	37.38	1		AC008164
S/G/Y/R/B/O	NT_015926	AC008069	22354312	3
S/G/Y/R/B/O	NT_015926	AC080094	22542114	3
S/G/Y/R/B/O	NT_015926	AC064855	22675915	3
S/G/Y/R/B/O	NT_015926	AC096556	22685133	3
S/G/Y/R/B/O	NT_015926	AC068614	22846038	3	AFM270XH9			2	38.33	1		AC068614
S/G/Y/R/B/O	NT_015926	AC068614	22846038	3	AFM270XH9	2	40.20			1		AC068614
S/G/Y/R/B/O	NT_015926	AC068614	22908015	3	GATA11H10			2	38.33	1		AC068614
S/G/Y/R/B/O	NT_015926	AC092843	22929213	3
S/G/Y/R/B/O	NT_015926	AC104812	23042388	1	AFMA116XD9			2	38.33	1	AC068487, AC068520,	AC068487, AC068520, AC104812
S/G/Y/R/B/O	NT_015926	AC104812	23042388	1	AFMA116XD9	2	40.20			1	AC068487, AC068520,	AC068487, AC068520, AC104812
S/G/Y/R/B/O	NT_015926	AC068520	23096715	1
S/G/Y/R/B/O	NT_015926	AC068487	23100965	1
S/G/Y/R/B/O	NT_015926	AC079839	23134545	3
S/G/Y/R/B/O	NT_015926	AC097377	23204855	3
S/G/Y/R/B/O	NT_015926	AC093731	23361778	3
S/G/Y/R/B/O	NT_015926	AC090499	23554375	1	AFM155XE11	4	93.50	4	95.09	1	AC019036,	AC019036, AC090499
S/G/Y/R/B/O	NT_015926	AC093624	23674117	1	AFM137XG11			2	38.33	1	AC079802,	AC079802, AC093624
S/G/Y/R/B/O	NT_015926	AC093624	23674117	1	AFM137XG11	2	40.20			1	AC079802,	AC079802, AC093624
S/G/Y/R/B/O	NT_015926	AC079802	23728977	3
S/G/Y/R/B/O	NT_015926	AC104786	23747594	1
S/G/Y/R/B/O	NT_015926	AC018948	23851058	1
S/G/Y/R/B/O	NT_015926	AC114769	23907551	3
S/G/Y/R/B/O	NT_015926	AC097531	23954065	3
S/G/Y/R/B/O	NT_015926	AC079148	24076738	3	AFMA070WE9			2	38.87	1		AC079148
S/G/Y/R/B/O	NT_015926	AC079148	24076738	3	AFMA070WE9	2	40.70			1		AC079148
S/G/Y/R/B/O	NT_015926	AC092586	24309964	3	MFD266			2	38.87	1		AC016389, AC092586
S/G/Y/R/B/O	NT_015926	AC106053	24359234	1
S/G/Y/R/B/O	NT_015926		-		AFMA046YH9			2	36.72	0