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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_007988 | AC015564 | 26863117 | 3 | chr8 | NT_007988 | AC091675 | 27026886 | 3 | 59310 | 0 | 0 | 59310 |
S/G/Y/R/B/O |
NT_007988 | AC015564 | 26863117 | 3 | chr8 | NT_023666 | AC015743 | 26674114 | 3 | 78969 | 0 | 0 | 78969 |
S/G/Y/R/B/O |
NT_007988 | AC091675 | 27026886 | 3 | chr8 | NT_007988 | AC022839 | 27155227 | 3 | 26179 | 0 | 0 | 26179 |
S/G/Y/R/B/O |
NT_007988 | AC091675 | 27026886 | 3 |   |   | AC025712 | 27155227 | | 39166 | 10149 | 56884 | 106199 |
S/G/Y/R/B/O |
NT_007988 | AC022839 | 27155227 | 3 | chr8 | NT_007988 | AC067904 | 27287097 | 1 | 0 | 0 | 10747 | 10747 |
S/G/Y/R/B/O |
NT_007988 | AC022839 | 27155227 | 3 |   |   | AC025712 | 27155227 | | 40779 | 1688 | 41357 | 83824 |
S/G/Y/R/B/O |
NT_007988 | AC067904 | 27287097 | 1 | chr8 | NT_007988 | AC041007 | 27411332 | 1 | 0 | 2215 | 20024 | 22239 |
S/G/Y/R/B/O |
NT_007988 | AC041007 | 27411332 | 1 | chr8 | NT_007988 | AC090150 | 27430843 | 3 | 51840 | 4739 | 12218 | 68797 |
S/G/Y/R/B/O |
NT_007988 | AC041007 | 27411332 | 1 |   |   | AC016756 | 27411332 | | 32030 | 8587 | 10799 | 51416 |
S/G/Y/R/B/O |
NT_007988 | AC090150 | 27430843 | 3 | chr8 | NT_007988 | AC124649 | 27641472 | 3 | 97053 | 0 | 0 | 97053 |
S/G/Y/R/B/O |
NT_007988 | AC090150 | 27430843 | 3 |   |   | AC016756 | 27430843 | | 125336 | 9822 | 16981 | 152139 |
S/G/Y/R/B/O |
NT_007988 | AC124649 | 27641472 | 3 | chr8 | NT_007988 | AC010856 | 27735240 | 3 | 8636 | 0 | 0 | 8636 |
S/G/Y/R/B/O |
NT_007988 | AC124649 | 27641472 | 3 |   |   | AC016756 | 27735240 | | 76170 | 3697 | 0 | 79867 |
S/G/Y/R/B/O |
NT_007988 | AC124649 | 27641472 | 3 |   |   | AC068590 | 27735240 | | 52208 | 4859 | 3864 | 60931 |
S/G/Y/R/B/O |
NT_007988 | AC010856 | 27735240 | 3 | chr8 | NT_007988 | AF311103 | 27753916 | 3 | 0 | 1006 | 0 | 1006 |
S/G/Y/R/B/O |
NT_007988 | AC010856 | 27735240 | 3 |   |   | AC068590 | 27430843 | | 12663 | 5871 | 0 | 18534 |
S/G/Y/R/B/O |
NT_007988 | AF311103 | 27753916 | 3 | chr8 | NT_007988 | AC013643 | 27987341 | 3 | 12462 | 0 | 0 | 12462 |
S/G/Y/R/B/O |
NT_007988 | AF311103 | 27753916 | 3 |   |   | AC025192 | 27987341 | | 39179 | 0 | 0 | 39179 |
S/G/Y/R/B/O |
NT_007988 | AF311103 | 27753916 | 3 |   |   | AC068590 | 27987341 | | 37673 | 8618 | 5317 | 51608 |
S/G/Y/R/B/O |
NT_007988 | AF311103 | 27753916 | 3 |   |   | AF235104 | 27987341 | | 15961 | 0 | 0 | 15961 |
S/G/Y/R/B/O |
NT_007988 | AC013643 | 27987341 | 3 | chr8 | NT_007988 | AC104997 | 28132186 | 3 | 29928 | 0 | 0 | 29928 |
S/G/Y/R/B/O |
NT_007988 | AC013643 | 27987341 | 3 |   |   | AC021497 | 27987341 | | 36331 | 2660 | 10950 | 49941 |
S/G/Y/R/B/O |
NT_007988 | AC013643 | 27987341 | 3 |   |   | AC025192 | 27987341 | | 107029 | 0 | 0 | 107029 |
S/G/Y/R/B/O |
NT_007988 | AC013643 | 27987341 | 3 |   |   | AF233390 | 28132186 | | 94901 | 0 | 0 | 94901 |
S/G/Y/R/B/O |
NT_007988 | AC013643 | 27987341 | 3 |   |   | AF235104 | 28132186 | | 157066 | 0 | 0 | 157066 |
S/G/Y/R/B/O |
NT_007988 | AC104997 | 28132186 | 3 | chr8 | NT_007988 | AC069113 | 28247117 | 3 | 65584 | 0 | 0 | 65584 |
S/G/Y/R/B/O |
NT_007988 | AC104997 | 28132186 | 3 |   |   | AC021497 | 27987341 | | 86828 | 4702 | 20868 | 112398 |
S/G/Y/R/B/O |
NT_007988 | AC104997 | 28132186 | 3 |   |   | AF217759 | 28247117 | | 83132 | 0 | 0 | 83132 |
S/G/Y/R/B/O |
NT_007988 | AC104997 | 28132186 | 3 |   |   | AF235104 | 28247117 | | 44407 | 0 | 0 | 44407 |
S/G/Y/R/B/O |
NT_007988 | AC104997 | 28132186 | 3 |   |   | AF271405 | 28247117 | | 109516 | 0 | 0 | 109516 |
S/G/Y/R/B/O |
NT_007988 | AC104997 | 28132186 | 3 |   |   | AF276759 | 28247117 | | 14866 | 0 | 0 | 14866 |
S/G/Y/R/B/O |
NT_007988 | AC069113 | 28247117 | 3 | chr8 | NT_007988 | AC091573 | 28379148 | 3 | 2995 | 0 | 0 | 2995 |
S/G/Y/R/B/O |
NT_007988 | AC069113 | 28247117 | 3 |   |   | AC021497 | 28247117 | | 26485 | 2942 | 15895 | 45322 |
S/G/Y/R/B/O |
NT_007988 | AC069113 | 28247117 | 3 |   |   | AC084849 | 28247117 | | 124930 | 3861 | 8090 | 136881 |
S/G/Y/R/B/O |
NT_007988 | AC069113 | 28247117 | 3 |   |   | AF217759 | 28132186 | | 56505 | 0 | 0 | 56505 |
S/G/Y/R/B/O |
NT_007988 | AC069113 | 28247117 | 3 |   |   | AF271405 | 28132186 | | 57268 | 0 | 0 | 57268 |
S/G/Y/R/B/O |
NT_007988 | AC069113 | 28247117 | 3 |   |   | AF276759 | 28132186 | | 146862 | 0 | 0 | 146862 |
S/G/Y/R/B/O |
NT_007988 | AC091573 | 28379148 | 3 | chr8 | NT_007988 | AC019031 | 28445831 | 3 | 66613 | 0 | 0 | 66613 |
S/G/Y/R/B/O |
NT_007988 | AC091573 | 28379148 | 3 |   |   | AC084849 | 28247117 | | 65832 | 0 | 2291 | 68123 |
S/G/Y/R/B/O |
NT_007988 | AC091573 | 28379148 | 3 |   |   | AF276759 | 28247117 | | 69673 | 0 | 0 | 69673 |
S/G/Y/R/B/O |
NT_007988 | AC019031 | 28445831 | 3 | chr8 | NT_007988 | AC021678 | 28536215 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_007988 | AC019031 | 28445831 | 3 |   |   | AC084849 | 28247117 | | 64506 | 4512 | 2844 | 71862 |
S/G/Y/R/B/O |
NT_007988 | AC019031 | 28445831 | 3 |   |   | AF276759 | 28379148 | | 66613 | 0 | 0 | 66613 |
S/G/Y/R/B/O |
NT_007988 | AC021678 | 28536215 | 3 | chr8 | NT_007988 | AC025871 | 28709730 | 3 | 28889 | 0 | 0 | 28889 |
S/G/Y/R/B/O |
NT_007988 | AC021678 | 28536215 | 3 |   |   | AC084261 | 28709730 | | 98125 | 0 | 0 | 98125 |
S/G/Y/R/B/O |
NT_007988 | AC021678 | 28536215 | 3 |   |   | AF276757 | 28709730 | | 34793 | 0 | 8434 | 43227 |
S/G/Y/R/B/O |
NT_007988 | AC025871 | 28709730 | 3 | chr8 | NT_007988 | AC011132 | 28853475 | 3 | 119273 | 0 | 0 | 119273 |
S/G/Y/R/B/O |
NT_007988 | AC025871 | 28709730 | 3 |   |   | AC084261 | 28536215 | | 89741 | 0 | 0 | 89741 |
S/G/Y/R/B/O |
NT_007988 | AC025871 | 28709730 | 3 |   |   | AF276757 | 28536215 | | 88300 | 0 | 0 | 88300 |
S/G/Y/R/B/O |
NT_007988 | AC011132 | 28853475 | 3 | chr8 | NT_007988 | AC013829 | 28899195 | 3 | 51334 | 0 | 0 | 51334 |
S/G/Y/R/B/O |
NT_007988 | AC011132 | 28853475 | 3 |   |   | AC012411 | 28536215 | | 53119 | 0 | 11676 | 64795 |
S/G/Y/R/B/O |
NT_007988 | AC011132 | 28853475 | 3 |   |   | AC084261 | 28709730 | | 36281 | 0 | 0 | 36281 |
S/G/Y/R/B/O |
NT_007988 | AC011132 | 28853475 | 3 |   |   | AF276757 | 28709730 | | 35028 | 0 | 0 | 35028 |
S/G/Y/R/B/O |
NT_007988 | AC013829 | 28899195 | 3 | chr8 | NT_007988 | AC131969 | 29046789 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_007988 | AC013829 | 28899195 | 3 |   |   | AC012411 | 28853475 | | 39674 | 0 | 48127 | 87801 |
S/G/Y/R/B/O |
NT_007988 | AC131969 | 29046789 | 3 | chr8 | NT_007988 | AC040975 | 29140960 | 3 | 46512 | 0 | 0 | 46512 |
S/G/Y/R/B/O |
NT_007988 | AC131969 | 29046789 | 3 |   |   | U96629 | 29140960 | | 126708 | 0 | 0 | 126708 |
S/G/Y/R/B/O |
NT_007988 | AC040975 | 29140960 | 3 | chr8 | NT_007988 | AC091558 | 29293511 | 3 | 33216 | 0 | 0 | 33216 |
S/G/Y/R/B/O |
NT_007988 | AC040975 | 29140960 | 3 |   |   | AC053535 | 29140960 | | 46838 | 0 | 0 | 46838 |
S/G/Y/R/B/O |
NT_007988 | AC091558 | 29293511 | 3 | chr8 | NT_007988 | AC108449 | 29375292 | 3 | 0 | 0 | 14021 | 14021 |
S/G/Y/R/B/O |
NT_007988 | AC091558 | 29293511 | 3 |   |   | AC053535 | 29140960 | | 102534 | 2164 | 0 | 104698 |
S/G/Y/R/B/O |
NT_007988 | AC108449 | 29375292 | 3 | chr8 | NT_007988 | AC103830 | 29521248 | 3 | 112572 | 0 | 0 | 112572 |
S/G/Y/R/B/O |
NT_007988 | AC108449 | 29375292 | 3 |   |   | AC024064 | 29375292 | | 67594 | 12132 | 32932 | 112658 |
S/G/Y/R/B/O |
NT_007988 | AC103830 | 29521248 | 3 | chr8 | NT_007988 | AC084262 | 29600201 | 3 | 4652 | 0 | 0 | 4652 |
S/G/Y/R/B/O |
NT_007988 | AC103830 | 29521248 | 3 |   |   | AC020588 | 29521248 | | 52650 | 0 | 0 | 52650 |
S/G/Y/R/B/O |
NT_007988 | AC103830 | 29521248 | 3 |   |   | AC024064 | 29521248 | | 55714 | 14725 | 36104 | 106543 |
S/G/Y/R/B/O |
NT_007988 | AC084262 | 29600201 | 3 | chr8 | NT_007988 | AC024678 | 29722748 | 3 | 40830 | 0 | 0 | 40830 |
S/G/Y/R/B/O |
NT_007988 | AC084262 | 29600201 | 3 |   |   | AC020588 | 29375292 | | 53889 | 0 | 36366 | 90255 |
S/G/Y/R/B/O |
NT_007988 | AC084262 | 29600201 | 3 |   |   | AC055851 | 29722748 | | 57172 | 0 | 0 | 57172 |
S/G/Y/R/B/O |
NT_007988 | AC024678 | 29722748 | 3 | chr8 | NT_007988 | AC084026 | 29849095 | 3 | 46611 | 0 | 0 | 46611 |
S/G/Y/R/B/O |
NT_007988 | AC024678 | 29722748 | 3 |   |   | AC020588 | 29521248 | | 32900 | 0 | 25577 | 58477 |
S/G/Y/R/B/O |
NT_007988 | AC024678 | 29722748 | 3 |   |   | AC055851 | 29521248 | | 110195 | 0 | 0 | 110195 |
S/G/Y/R/B/O |
NT_007988 | AC084026 | 29849095 | 3 | chr8 | NT_007988 | AC069181 | 29988242 | 1 | 3702 | 0 | 42389 | 46091 |
S/G/Y/R/B/O |
NT_007988 | AC069181 | 29988242 | 1 |   |   |   |   |   |   |   |   |   |
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