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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_028251 | AC135075 | 135583755 | 1 | chr8 | NT_028251 | AC105225 | 135596280 | 3 | 0 | 0 | 40204 | 40204 |
S/G/Y/R/B/O |
NT_028251 | AC105225 | 135596280 | 3 | chr8 | NT_028251 | AC015599 | 135731889 | 3 | 115517 | 0 | 0 | 115517 |
S/G/Y/R/B/O |
NT_028251 | AC105225 | 135596280 | 3 |   |   | AC124788 | 135731889 | | 43867 | 0 | 0 | 43867 |
S/G/Y/R/B/O |
NT_028251 | AC015599 | 135731889 | 3 | chr8 | NT_028251 | AC087045 | 135778978 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028251 | AC015599 | 135731889 | 3 |   |   | AC124788 | 135596280 | | 32565 | 0 | 0 | 32565 |
S/G/Y/R/B/O |
NT_028251 | AC087045 | 135778978 | 3 | chr8 | NT_028251 | AC083843 | 135890117 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028251 | AC087045 | 135778978 | 3 |   |   | AF307157 | 135583755 | | 64318 | 0 | 0 | 64318 |
S/G/Y/R/B/O |
NT_028251 | AC083843 | 135890117 | 3 | chr8 | NT_028251 | AF159227 | 135978002 | 3 | 64807 | 0 | 0 | 64807 |
S/G/Y/R/B/O |
NT_028251 | AC083843 | 135890117 | 3 |   |   | AF161800 | 135978002 | | 62040 | 0 | 0 | 62040 |
S/G/Y/R/B/O |
NT_028251 | AC083843 | 135890117 | 3 |   |   | AF307157 | 135978002 | | 43325 | 0 | 0 | 43325 |
S/G/Y/R/B/O |
NT_028251 | AF159227 | 135978002 | 3 | chr8 | NT_028251 | AC103764 | 136022400 | 1 | 44612 | 0 | 0 | 44612 |
S/G/Y/R/B/O |
NT_028251 | AF159227 | 135978002 | 3 |   |   | AF161800 | 136022400 | | 60277 | 0 | 0 | 60277 |
S/G/Y/R/B/O |
NT_028251 | AC103764 | 136022400 | 1 | chr8 | NT_028251 | AC022681 | 136151719 | 3 | 5292 | 0 | 0 | 5292 |
S/G/Y/R/B/O |
NT_028251 | AC022681 | 136151719 | 3 | chr8 | NT_028251 | AC107460 | 136371377 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028251 | AC107460 | 136371377 | 3 | chr8 | NT_028251 | AC019342 | 136495090 | 3 | 61517 | 0 | 0 | 61517 |
S/G/Y/R/B/O |
NT_028251 | AC107460 | 136371377 | 3 |   |   | AF207067 | 136495090 | | 108673 | 0 | 0 | 108673 |
S/G/Y/R/B/O |
NT_028251 | AC019342 | 136495090 | 3 | chr8 | NT_028251 | AC040914 | 136513246 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_028251 | AC019342 | 136495090 | 3 |   |   | AF207067 | 136371377 | | 32327 | 0 | 0 | 32327 |
S/G/Y/R/B/O |
NT_028251 | AC040914 | 136513246 | 3 | chr8 | NT_028251 | AC104371 | 136657678 | 3 | 76124 | 0 | 0 | 76124 |
S/G/Y/R/B/O |
NT_028251 | AC104371 | 136657678 | 3 | chr8 | NT_028251 | AC105008 | 136788110 | 3 | 77052 | 0 | 0 | 77052 |
S/G/Y/R/B/O |
NT_028251 | AC105008 | 136788110 | 3 | chr8 | NT_028251 | AC104952 | 136883603 | 3 | 33474 | 0 | 0 | 33474 |
S/G/Y/R/B/O |
NT_028251 | AC104952 | 136883603 | 3 | chr8 | NT_028251 | AC103955 | 137040997 | 3 | 43101 | 0 | 0 | 43101 |
S/G/Y/R/B/O |
NT_028251 | AC104952 | 136883603 | 3 |   |   | AF215841 | 136788110 | | 43096 | 0 | 0 | 43096 |
S/G/Y/R/B/O |
NT_028251 | AC103955 | 137040997 | 3 | chr8 | NT_028251 | AC079098 | 137109263 | 3 | 14842 | 0 | 0 | 14842 |
S/G/Y/R/B/O |
NT_028251 | AC103955 | 137040997 | 3 |   |   | AC017062 | 136788110 | | 13844 | 0 | 19476 | 33320 |
S/G/Y/R/B/O |
NT_028251 | AC103955 | 137040997 | 3 |   |   | AF215841 | 136883603 | | 111361 | 0 | 0 | 111361 |
S/G/Y/R/B/O |
NT_028251 | AC079098 | 137109263 | 3 | chr8 | NT_028251 | AC023781 | 137252520 | 3 | 7084 | 0 | 0 | 7084 |
S/G/Y/R/B/O |
NT_028251 | AC079098 | 137109263 | 3 |   |   | AC017062 | 136883603 | | 55588 | 2985 | 67036 | 125609 |
S/G/Y/R/B/O |
NT_028251 | AC079098 | 137109263 | 3 |   |   | AF215841 | 137040997 | | 14839 | 0 | 0 | 14839 |
S/G/Y/R/B/O |
NT_028251 | AC023781 | 137252520 | 3 | chr8 | NT_028251 | AC025056 | 137393043 | 3 | 49459 | 0 | 0 | 49459 |
S/G/Y/R/B/O |
NT_028251 | AC025056 | 137393043 | 3 | chr8 | NT_028251 | AC013546 | 137509806 | 3 | 20988 | 0 | 0 | 20988 |
S/G/Y/R/B/O |
NT_028251 | AC013546 | 137509806 | 3 | chr8 | NT_028251 | AC012410 | 137666936 | 3 | 40124 | 0 | 0 | 40124 |
S/G/Y/R/B/O |
NT_028251 | AC013546 | 137509806 | 3 |   |   | AC016080 | 137666936 | | 19235 | 0 | 0 | 19235 |
S/G/Y/R/B/O |
NT_028251 | AC013546 | 137509806 | 3 |   |   | AC024359 | 137666936 | | 50164 | 0 | 0 | 50164 |
S/G/Y/R/B/O |
NT_028251 | AC013546 | 137509806 | 3 |   |   | AC025621 | 137393043 | | 19181 | 0 | 5352 | 24533 |
S/G/Y/R/B/O |
NT_028251 | AC013546 | 137509806 | 3 |   |   | AC027747 | 137393043 | | 90436 | 0 | 0 | 90436 |
S/G/Y/R/B/O |
NT_028251 | AC013546 | 137509806 | 3 |   |   | AC090737 | 137393043 | | 55179 | 0 | 9801 | 64980 |
S/G/Y/R/B/O |
NT_028251 | AC012410 | 137666936 | 3 | chr8 | NT_028251 | AC021621 | 137847464 | 3 | 0 | 0 | 13040 | 13040 |
S/G/Y/R/B/O |
NT_028251 | AC012410 | 137666936 | 3 |   |   | AC013646 | 137509806 | | 32378 | 0 | 0 | 32378 |
S/G/Y/R/B/O |
NT_028251 | AC012410 | 137666936 | 3 |   |   | AC013707 | 137509806 | | 161364 | 0 | 2187 | 163551 |
S/G/Y/R/B/O |
NT_028251 | AC012410 | 137666936 | 3 |   |   | AC016080 | 137509806 | | 176613 | 0 | 0 | 176613 |
S/G/Y/R/B/O |
NT_028251 | AC012410 | 137666936 | 3 |   |   | AC024359 | 137847464 | | 106039 | 0 | 0 | 106039 |
S/G/Y/R/B/O |
NT_028251 | AC012410 | 137666936 | 3 |   |   | AC025621 | 137847464 | | 128133 | 1863 | 19760 | 149756 |
S/G/Y/R/B/O |
NT_028251 | AC012410 | 137666936 | 3 |   |   | AC027747 | 137847464 | | 106847 | 0 | 7915 | 114762 |
S/G/Y/R/B/O |
NT_028251 | AC012410 | 137666936 | 3 |   |   | AC090737 | 137847464 | | 176894 | 0 | 9813 | 186707 |
S/G/Y/R/B/O |
NT_028251 | AC021621 | 137847464 | 3 | chr8 | NT_028251 | AC026261 | 138020432 | 3 | 96009 | 0 | 0 | 96009 |
S/G/Y/R/B/O |
NT_028251 | AC021621 | 137847464 | 3 |   |   | AC021301 | 137666936 | | 140764 | 0 | 0 | 140764 |
S/G/Y/R/B/O |
NT_028251 | AC021621 | 137847464 | 3 |   |   | AC021489 | 137666936 | | 130058 | 0 | 11107 | 141165 |
S/G/Y/R/B/O |
NT_028251 | AC021621 | 137847464 | 3 |   |   | AC068684 | 138020432 | | 70235 | 0 | 0 | 70235 |
S/G/Y/R/B/O |
NT_028251 | AC026261 | 138020432 | 3 | chr8 | NT_028251 | AC093328 | 138115991 | 3 | 2099 | 0 | 0 | 2099 |
S/G/Y/R/B/O |
NT_028251 | AC026261 | 138020432 | 3 |   |   | AC021301 | 138020432 | | 61363 | 0 | 0 | 61363 |
S/G/Y/R/B/O |
NT_028251 | AC026261 | 138020432 | 3 |   |   | AC021489 | 138020432 | | 51399 | 0 | 0 | 51399 |
S/G/Y/R/B/O |
NT_028251 | AC026261 | 138020432 | 3 |   |   | AC068684 | 137847464 | | 39962 | 0 | 0 | 39962 |
S/G/Y/R/B/O |
NT_028251 | AC093328 | 138115991 | 3 | chr8 | NT_028251 | AC093566 | 138279631 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028251 | AC093328 | 138115991 | 3 |   |   | AF215844 | 138020432 | | 60017 | 0 | 9418 | 69435 |
S/G/Y/R/B/O |
NT_028251 | AC093566 | 138279631 | 3 | chr8 | NT_028251 | AC091160 | 138449190 | 3 | 6745 | 0 | 0 | 6745 |
S/G/Y/R/B/O |
NT_028251 | AC093566 | 138279631 | 3 |   |   | AF119709 | 138449190 | | 25356 | 0 | 0 | 25356 |
S/G/Y/R/B/O |
NT_028251 | AC093566 | 138279631 | 3 |   |   | AF217246 | 138449190 | | 82853 | 1411 | 29541 | 113805 |
S/G/Y/R/B/O |
NT_028251 | AC091160 | 138449190 | 3 | chr8 | NT_028251 | AC105213 | 138657771 | 3 | 38140 | 0 | 0 | 38140 |
S/G/Y/R/B/O |
NT_028251 | AC105213 | 138657771 | 3 | chr8 | NT_028251 | AC110053 | 138819732 | 3 | 12158 | 0 | 0 | 12158 |
S/G/Y/R/B/O |
NT_028251 | AC110053 | 138819732 | 3 | chr8 | NT_028251 | AC046195 | 138949760 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028251 | AC046195 | 138949760 | 3 | chr8 | NT_028251 | AC079015 | 139079971 | 3 | 14961 | 0 | 0 | 14961 |
S/G/Y/R/B/O |
NT_028251 | AC046195 | 138949760 | 3 |   |   | AC079201 | 139079971 | | 58170 | 0 | 3667 | 61837 |
S/G/Y/R/B/O |
NT_028251 | AC079015 | 139079971 | 3 | chr8 | NT_028251 | AC103777 | 139222102 | 1 | 7665 | 0 | 0 | 7665 |
S/G/Y/R/B/O |
NT_028251 | AC079015 | 139079971 | 3 |   |   | AC079201 | 138949760 | | 42167 | 4729 | 13297 | 60193 |
S/G/Y/R/B/O |
NT_028251 | AC103777 | 139222102 | 1 | chr8 | NT_028251 | AC087711 | 139348758 | 3 | 0 | 0 | 29774 | 29774 |
S/G/Y/R/B/O |
NT_028251 | AC103777 | 139222102 | 1 |   |   | AC051659 | 853487 | | 22802 | 0 | 5420 | 28222 |
S/G/Y/R/B/O |
NT_028251 | AC103777 | 139222102 | 1 |   |   | AC051659 | 853487 | | 22802 | 0 | 5420 | 28222 |
S/G/Y/R/B/O |
NT_028251 | AC103777 | 139222102 | 1 |   |   | AF214671 | 139348758 | | 78252 | 0 | 0 | 78252 |
S/G/Y/R/B/O |
NT_028251 | AC103777 | 139222102 | 1 |   |   | AF214671 | 139348758 | | 78252 | 0 | 0 | 78252 |
S/G/Y/R/B/O |
NT_028251 | AC103777 | 139222102 | 1 |   |   | AF298853 | 139348758 | | 14825 | 0 | 37765 | 52590 |
S/G/Y/R/B/O |
NT_028251 | AC103777 | 139222102 | 1 |   |   | AF298853 | 139348758 | | 14825 | 0 | 37765 | 52590 |
S/G/Y/R/B/O |
NT_028251 | AC087711 | 139348758 | 3 | chr8 | NT_028251 | AC068467 | 139494663 | 3 | 14483 | 0 | 0 | 14483 |
S/G/Y/R/B/O |
NT_028251 | AC087711 | 139348758 | 3 |   |   | AC051659 | 139348758 | | 72163 | 0 | 56549 | 128712 |
S/G/Y/R/B/O |
NT_028251 | AC087711 | 139348758 | 3 |   |   | AC092703 | 139494663 | | 132511 | 4869 | 6833 | 144213 |
S/G/Y/R/B/O |
NT_028251 | AC087711 | 139348758 | 3 |   |   | AF298853 | 139222102 | | 94442 | 1712 | 7448 | 103602 |
S/G/Y/R/B/O |
NT_028251 | AC068467 | 139494663 | 3 | chr8 | NT_028251 | AC115720 | 139666056 | 3 | 8404 | 0 | 0 | 8404 |
S/G/Y/R/B/O |
NT_028251 | AC068467 | 139494663 | 3 |   |   | AC051659 | 139222102 | | 14334 | 0 | 0 | 14334 |
S/G/Y/R/B/O |
NT_028251 | AC068467 | 139494663 | 3 |   |   | AC092703 | 139348758 | | 13094 | 1307 | 0 | 14401 |
S/G/Y/R/B/O |
NT_028251 | AC068467 | 139494663 | 3 |   |   | AF298853 | 139666056 | | 14383 | 0 | 0 | 14383 |
S/G/Y/R/B/O |
NT_028251 | AC115720 | 139666056 | 3 | chr8 | NT_028251 | AC105130 | 139755718 | 3 | 79866 | 0 | 0 | 79866 |
S/G/Y/R/B/O |
NT_028251 | AC105130 | 139755718 | 3 |   |   |   |   |   |   |   |   |   |
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