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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_007995 | AC108926 | 30136129 | 3 | chr8 | NT_007995 | AC091165 | 30162931 | 3 | 12847 | 0 | 0 | 12847 |
S/G/Y/R/B/O |
NT_007995 | AC108926 | 30136129 | 3 |   |   | AC124232 | 30162931 | | 12846 | 0 | 0 | 12846 |
S/G/Y/R/B/O |
NT_007995 | AC091165 | 30162931 | 3 | chr8 | NT_007995 | AC044849 | 30338540 | 3 | 63642 | 0 | 0 | 63642 |
S/G/Y/R/B/O |
NT_007995 | AC091165 | 30162931 | 3 |   |   | AC017065 | 30162931 | | 125796 | 11503 | 7963 | 145262 |
S/G/Y/R/B/O |
NT_007995 | AC091165 | 30162931 | 3 |   |   | AC124232 | 30136129 | | 61911 | 0 | 0 | 61911 |
S/G/Y/R/B/O |
NT_007995 | AC044849 | 30338540 | 3 | chr8 | NT_007995 | AC026979 | 30424138 | 3 | 9244 | 0 | 0 | 9244 |
S/G/Y/R/B/O |
NT_007995 | AC044849 | 30338540 | 3 |   |   | AC017065 | 30136129 | | 52688 | 5617 | 1216 | 59521 |
S/G/Y/R/B/O |
NT_007995 | AC026979 | 30424138 | 3 | chr8 | NT_007995 | AC090820 | 30545212 | 3 | 47887 | 0 | 0 | 47887 |
S/G/Y/R/B/O |
NT_007995 | AC090820 | 30545212 | 3 | chr8 | NT_007995 | AC109329 | 30635286 | 3 | 90846 | 0 | 0 | 90846 |
S/G/Y/R/B/O |
NT_007995 | AC109329 | 30635286 | 3 | chr8 | NT_007995 | AC011204 | 30700087 | 3 | 59234 | 0 | 0 | 59234 |
S/G/Y/R/B/O |
NT_007995 | AC109329 | 30635286 | 3 |   |   | AF165140 | 30545212 | | 35300 | 0 | 0 | 35300 |
S/G/Y/R/B/O |
NT_007995 | AC109329 | 30635286 | 3 |   |   | AF252825 | 30545212 | | 93846 | 0 | 16691 | 110537 |
S/G/Y/R/B/O |
NT_007995 | AC011204 | 30700087 | 3 | chr8 | NT_007995 | AC102945 | 30856013 | 3 | 30205 | 0 | 0 | 30205 |
S/G/Y/R/B/O |
NT_007995 | AC011204 | 30700087 | 3 |   |   | AF165140 | 30635286 | | 114713 | 0 | 0 | 114713 |
S/G/Y/R/B/O |
NT_007995 | AC011204 | 30700087 | 3 |   |   | AF252825 | 30635286 | | 51486 | 0 | 1130 | 52616 |
S/G/Y/R/B/O |
NT_007995 | AC011204 | 30700087 | 3 |   |   | AF252826 | 30635286 | | 30086 | 0 | 0 | 30086 |
S/G/Y/R/B/O |
NT_007995 | AC102945 | 30856013 | 3 | chr8 | NT_007995 | AC103959 | 30953439 | 1 | 0 | 0 | 60663 | 60663 |
S/G/Y/R/B/O |
NT_007995 | AC102945 | 30856013 | 3 |   |   | AF165140 | 30953439 | | 13622 | 0 | 0 | 13622 |
S/G/Y/R/B/O |
NT_007995 | AC102945 | 30856013 | 3 |   |   | AF252826 | 30953439 | | 83254 | 2685 | 11464 | 97403 |
S/G/Y/R/B/O |
NT_007995 | AC103959 | 30953439 | 1 | chr8 | NT_007995 | AC009314 | 30987063 | 3 | 26965 | 0 | 78520 | 105485 |
S/G/Y/R/B/O |
NT_007995 | AC103959 | 30953439 | 1 |   |   | AC087624 | 30987063 | | 36332 | 0 | 19390 | 55722 |
S/G/Y/R/B/O |
NT_007995 | AC103959 | 30953439 | 1 |   |   | AC087624 | 30987063 | | 36332 | 0 | 19390 | 55722 |
S/G/Y/R/B/O |
NT_007995 | AC103959 | 30953439 | 1 |   |   | AF215848 | 30856013 | | 60590 | 0 | 15690 | 76280 |
S/G/Y/R/B/O |
NT_007995 | AC103959 | 30953439 | 1 |   |   | AF215848 | 30856013 | | 60590 | 0 | 15690 | 76280 |
S/G/Y/R/B/O |
NT_007995 | AC103959 | 30953439 | 1 |   |   | AF252826 | 30856013 | | 29451 | 2683 | 26183 | 58317 |
S/G/Y/R/B/O |
NT_007995 | AC103959 | 30953439 | 1 |   |   | AF252826 | 30856013 | | 29451 | 2683 | 26183 | 58317 |
S/G/Y/R/B/O |
NT_007995 | AC009314 | 30987063 | 3 | chr8 | NT_007995 | AC008066 | 31148851 | 3 | 0 | 0 | 200 | 200 |
S/G/Y/R/B/O |
NT_007995 | AC009314 | 30987063 | 3 |   |   | AC087624 | 31148851 | | 89217 | 1866 | 21226 | 112309 |
S/G/Y/R/B/O |
NT_007995 | AC009314 | 30987063 | 3 |   |   | AF215848 | 30953439 | | 64264 | 1668 | 9842 | 75774 |
S/G/Y/R/B/O |
NT_007995 | AC008066 | 31148851 | 3 | chr8 | NT_007995 | AC084736 | 31322998 | 3 | 44707 | 0 | 0 | 44707 |
S/G/Y/R/B/O |
NT_007995 | AC008066 | 31148851 | 3 |   |   | AC084087 | 30987063 | | 66255 | 0 | 0 | 66255 |
S/G/Y/R/B/O |
NT_007995 | AC008066 | 31148851 | 3 |   |   | AC087624 | 31322998 | | 38329 | 0 | 0 | 38329 |
S/G/Y/R/B/O |
NT_007995 | AC008066 | 31148851 | 3 |   |   | AC090281 | 31322998 | | 107081 | 0 | 0 | 107081 |
S/G/Y/R/B/O |
NT_007995 | AC008066 | 31148851 | 3 |   |   | AF212833 | 31322998 | | 56511 | 0 | 13003 | 69514 |
S/G/Y/R/B/O |
NT_007995 | AC084736 | 31322998 | 3 | chr8 | NT_007995 | AC009563 | 31458309 | 3 | 72688 | 0 | 0 | 72688 |
S/G/Y/R/B/O |
NT_007995 | AC009563 | 31458309 | 3 | chr8 | NT_007995 | AC104044 | 31575563 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_007995 | AC104044 | 31575563 | 3 | chr8 | NT_007995 | AC068672 | 31609871 | 3 | 9887 | 0 | 0 | 9887 |
S/G/Y/R/B/O |
NT_007995 | AC068672 | 31609871 | 3 | chr8 | NT_007995 | AC090816 | 31809454 | 3 | 0 | 0 | 68263 | 68263 |
S/G/Y/R/B/O |
NT_007995 | AC090816 | 31809454 | 3 | chr8 | NT_007995 | AC004040 | 31867519 | 3 | 13995 | 0 | 0 | 13995 |
S/G/Y/R/B/O |
NT_007995 | AC090816 | 31809454 | 3 | chr8 | NT_007995 | AC104000 | 31912933 | 3 | 11754 | 0 | 0 | 11754 |
S/G/Y/R/B/O |
NT_007995 | AC004040 | 31867519 | 3 | chr8 | NT_007995 | AC104000 | 31912933 | 3 | 57135 | 0 | 0 | 57135 |
S/G/Y/R/B/O |
NT_007995 | AC004040 | 31867519 | 3 |   |   | AC083759 | 31912933 | | 13984 | 0 | 0 | 13984 |
S/G/Y/R/B/O |
NT_007995 | AC104000 | 31912933 | 3 | chr8 | NT_007995 | AC104029 | 32012583 | 3 | 84834 | 0 | 0 | 84834 |
S/G/Y/R/B/O |
NT_007995 | AC104000 | 31912933 | 3 | chr8 | NT_007995 | AC090816 | 31809454 | 3 | 11754 | 0 | 0 | 11754 |
S/G/Y/R/B/O |
NT_007995 | AC104000 | 31912933 | 3 |   |   | AC083759 | 31867519 | | 11743 | 0 | 0 | 11743 |
S/G/Y/R/B/O |
NT_007995 | AC104029 | 32012583 | 3 | chr8 | NT_007995 | AC068931 | 32105190 | 3 | 45896 | 0 | 0 | 45896 |
S/G/Y/R/B/O |
NT_007995 | AC104029 | 32012583 | 3 |   |   | AC027024 | 32012583 | | 37040 | 6817 | 0 | 43857 |
S/G/Y/R/B/O |
NT_007995 | AC068931 | 32105190 | 3 | chr8 | NT_007995 | AC022833 | 32160766 | 3 | 0 | 0 | 12744 | 12744 |
S/G/Y/R/B/O |
NT_007995 | AC068931 | 32105190 | 3 |   |   | AC027024 | 32160766 | | 75524 | 11246 | 7434 | 94204 |
S/G/Y/R/B/O |
NT_007995 | AC022833 | 32160766 | 3 | chr8 | NT_007995 | AC021909 | 32324608 | 3 | 85124 | 0 | 0 | 85124 |
S/G/Y/R/B/O |
NT_007995 | AC022833 | 32160766 | 3 |   |   | AC027024 | 32324608 | | 34372 | 13715 | 20390 | 68477 |
S/G/Y/R/B/O |
NT_007995 | AC021909 | 32324608 | 3 | chr8 | NT_007995 | AC022850 | 32417866 | 3 | 3674 | 0 | 0 | 3674 |
S/G/Y/R/B/O |
NT_007995 | AC022850 | 32417866 | 3 | chr8 | NT_007995 | AC023948 | 32584458 | 3 | 106631 | 0 | 0 | 106631 |
S/G/Y/R/B/O |
NT_007995 | AC023948 | 32584458 | 3 | chr8 | NT_007995 | AC068359 | 32673805 | 3 | 34928 | 0 | 0 | 34928 |
S/G/Y/R/B/O |
NT_007995 | AC068359 | 32673805 | 3 | chr8 | NT_007995 | AC083977 | 32825260 | 3 | 50220 | 0 | 0 | 50220 |
S/G/Y/R/B/O |
NT_007995 | AC083977 | 32825260 | 3 | chr8 | NT_007995 | AC013561 | 32987592 | 3 | 126139 | 0 | 0 | 126139 |
S/G/Y/R/B/O |
NT_007995 | AC083977 | 32825260 | 3 | chr8 | NT_007995 | AC103675 | 33046530 | 3 | 32750 | 0 | 0 | 32750 |
S/G/Y/R/B/O |
NT_007995 | AC083977 | 32825260 | 3 |   |   | AF181895 | 33046530 | | 32741 | 0 | 0 | 32741 |
S/G/Y/R/B/O |
NT_007995 | AC013561 | 32987592 | 3 | chr8 | NT_007995 | AC103675 | 33046530 | 3 | 91660 | 0 | 0 | 91660 |
S/G/Y/R/B/O |
NT_007995 | AC013561 | 32987592 | 3 |   |   | AF128834 | 33046530 | | 67045 | 823 | 0 | 67868 |
S/G/Y/R/B/O |
NT_007995 | AC013561 | 32987592 | 3 |   |   | AF181895 | 33046530 | | 91653 | 0 | 0 | 91653 |
S/G/Y/R/B/O |
NT_007995 | AC103675 | 33046530 | 3 | chr8 | NT_007995 | AC113209 | 33064321 | 3 | 17794 | 0 | 0 | 17794 |
S/G/Y/R/B/O |
NT_007995 | AC103675 | 33046530 | 3 | chr8 | NT_007995 | AC083977 | 32825260 | 3 | 32750 | 0 | 0 | 32750 |
S/G/Y/R/B/O |
NT_007995 | AC103675 | 33046530 | 3 |   |   | AF128834 | 33064321 | | 85618 | 0 | 0 | 85618 |
S/G/Y/R/B/O |
NT_007995 | AC103675 | 33046530 | 3 |   |   | AF181895 | 33064321 | | 109537 | 0 | 0 | 109537 |
S/G/Y/R/B/O |
NT_007995 | AC113209 | 33064321 | 3 | chr8 | NT_007995 | AC090204 | 33240497 | 3 | 53812 | 0 | 0 | 53812 |
S/G/Y/R/B/O |
NT_007995 | AC113209 | 33064321 | 3 |   |   | AF181895 | 33046530 | | 17810 | 0 | 0 | 17810 |
S/G/Y/R/B/O |
NT_007995 | AC113209 | 33064321 | 3 |   |   | AF182108 | 33046530 | | 30850 | 0 | 1897 | 32747 |
S/G/Y/R/B/O |
NT_007995 | AC090204 | 33240497 | 3 | chr8 | NT_007995 | AC104037 | 33359876 | 3 | 0 | 0 | 2190 | 2190 |
S/G/Y/R/B/O |
NT_007995 | AC090204 | 33240497 | 3 |   |   | AF182108 | 33064321 | | 75108 | 0 | 42089 | 117197 |
S/G/Y/R/B/O |
NT_007995 | AC104037 | 33359876 | 3 | chr8 | NT_007995 | AC104005 | 33509591 | 3 | 85007 | 0 | 0 | 85007 |
S/G/Y/R/B/O |
NT_007995 | AC104037 | 33359876 | 3 | chr8 | NT_007995 | AC104027 | 33609716 | 3 | 29982 | 0 | 0 | 29982 |
S/G/Y/R/B/O |
NT_007995 | AC104037 | 33359876 | 3 |   |   | AF307158 | 33609716 | | 104808 | 0 | 0 | 104808 |
S/G/Y/R/B/O |
NT_007995 | AC104005 | 33509591 | 3 | chr8 | NT_007995 | AC104027 | 33609716 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_007995 | AC104005 | 33509591 | 3 |   |   | AF307158 | 33359876 | | 87811 | 0 | 0 | 87811 |
S/G/Y/R/B/O |
NT_007995 | AC104027 | 33609716 | 3 | chr8 | NT_007995 | AC091144 | 33657159 | 3 | 0 | 767 | 0 | 767 |
S/G/Y/R/B/O |
NT_007995 | AC104027 | 33609716 | 3 | chr8 | NT_007995 | AC104037 | 33359876 | 3 | 29982 | 0 | 0 | 29982 |
S/G/Y/R/B/O |
NT_007995 | AC104027 | 33609716 | 3 |   |   | AC067838 | 33359876 | | 29223 | 0 | 0 | 29223 |
S/G/Y/R/B/O |
NT_007995 | AC104027 | 33609716 | 3 |   |   | AC067838 | 33359876 | | 29223 | 0 | 0 | 29223 |
S/G/Y/R/B/O |
NT_007995 | AC104027 | 33609716 | 3 |   |   | AF307158 | 33359876 | | 33321 | 0 | 0 | 33321 |
S/G/Y/R/B/O |
NT_007995 | AC091144 | 33657159 | 3 | chr8 | NT_007995 | AC013603 | 33818897 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_007995 | AC091144 | 33657159 | 3 |   |   | AC067838 | 33359876 | | 75755 | 0 | 0 | 75755 |
S/G/Y/R/B/O |
NT_007995 | AC091144 | 33657159 | 3 |   |   | AC067838 | 33359876 | | 75755 | 0 | 0 | 75755 |
S/G/Y/R/B/O |
NT_007995 | AC091144 | 33657159 | 3 |   |   | AC067838 | 33359876 | | 75755 | 0 | 0 | 75755 |
S/G/Y/R/B/O |
NT_007995 | AC091144 | 33657159 | 3 |   |   | AC067838 | 33359876 | | 75755 | 0 | 0 | 75755 |
S/G/Y/R/B/O |
NT_007995 | AC091144 | 33657159 | 3 |   |   | AC090087 | 33359876 | | 81177 | 12067 | 9657 | 102901 |
S/G/Y/R/B/O |
NT_007995 | AC091144 | 33657159 | 3 |   |   | AC090087 | 33359876 | | 81177 | 12067 | 9657 | 102901 |
S/G/Y/R/B/O |
NT_007995 | AC013603 | 33818897 | 3 | chr8 | NT_007995 | AC015779 | 33996736 | 3 | 42098 | 0 | 0 | 42098 |
S/G/Y/R/B/O |
NT_007995 | AC013603 | 33818897 | 3 |   |   | AC090087 | 33996736 | | 39247 | 10736 | 3240 | 53223 |
S/G/Y/R/B/O |
NT_007995 | AC015779 | 33996736 | 3 | chr8 | NT_007995 | AC090730 | 34045364 | 2 | 6335 | 0 | 0 | 6335 |
S/G/Y/R/B/O |
NT_007995 | AC090730 | 34045364 | 2 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_007995 | AC090730 | 34045364 | 2 |   |   | AC090472 | 33996736 | | 66149 | 0 | 0 | 66149 |
S/G/Y/R/B/O |
NT_007995 | AC090730 | 34045364 | 2 |   |   | AF279873 | 33996736 | | 66154 | 0 | 0 | 66154 |
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