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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_034898 | AC100801 | 86617326 | 3 | chr8 | NT_034898 | AC023194 | 86729034 | 3 | 10765 | 0 | 0 | 10765 |
S/G/Y/R/B/O |
NT_034898 | AC100801 | 86617326 | 3 |   |   | AC009801 | 86401448 | | 53841 | 17685 | 13364 | 84890 |
S/G/Y/R/B/O |
NT_034898 | AC100801 | 86617326 | 3 |   |   | AF206725 | 86729034 | | 101743 | 0 | 0 | 101743 |
S/G/Y/R/B/O |
NT_034898 | AC023194 | 86729034 | 3 | chr8 | NT_034898 | AC084128 | 86889484 | 3 | 20079 | 0 | 0 | 20079 |
S/G/Y/R/B/O |
NT_034898 | AC023194 | 86729034 | 3 |   |   | AC009801 | 86729034 | | 26716 | 13849 | 9352 | 49917 |
S/G/Y/R/B/O |
NT_034898 | AC023194 | 86729034 | 3 |   |   | AF206725 | 86617326 | | 10762 | 0 | 0 | 10762 |
S/G/Y/R/B/O |
NT_034898 | AC084128 | 86889484 | 3 | chr8 | NT_034898 | AC103760 | 87003091 | 3 | 22088 | 0 | 0 | 22088 |
S/G/Y/R/B/O |
NT_034898 | AC084128 | 86889484 | 3 |   |   | AF165424 | 87003091 | | 32076 | 0 | 0 | 32076 |
S/G/Y/R/B/O |
NT_034898 | AC103760 | 87003091 | 3 | chr8 | NT_034898 | AC083845 | 87089389 | 3 | 42953 | 0 | 0 | 42953 |
S/G/Y/R/B/O |
NT_034898 | AC103760 | 87003091 | 3 |   |   | AF165424 | 86889484 | | 95135 | 0 | 0 | 95135 |
S/G/Y/R/B/O |
NT_034898 | AC083845 | 87089389 | 3 | chr8 | NT_034898 | AC103817 | 87178942 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034898 | AC083845 | 87089389 | 3 |   |   | AF165424 | 87003091 | | 25710 | 0 | 0 | 25710 |
S/G/Y/R/B/O |
NT_034898 | AC103817 | 87178942 | 3 | chr8 | NT_034898 | AC013751 | 87302578 | 3 | 29117 | 0 | 0 | 29117 |
S/G/Y/R/B/O |
NT_034898 | AC013751 | 87302578 | 3 | chr8 | NT_034898 | AC090572 | 87479250 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034898 | AC013751 | 87302578 | 3 |   |   | AC021132 | 76897339 | | 22733 | 0 | 0 | 22733 |
S/G/Y/R/B/O |
NT_034898 | AC090572 | 87479250 | 1 | chr8 | NT_034898 | AC025522 | 87601567 | 3 | 3035 | 0 | 1292 | 4327 |
S/G/Y/R/B/O |
NT_034898 | AC090572 | 87479250 | 1 |   |   | AC021132 | 87178942 | | 112758 | 6092 | 35867 | 154717 |
S/G/Y/R/B/O |
NT_034898 | AC025522 | 87601567 | 3 | chr8 | NT_034898 | AC093333 | 87774837 | 3 | 90350 | 0 | 0 | 90350 |
S/G/Y/R/B/O |
NT_034898 | AC025522 | 87601567 | 3 |   |   | AC021132 | 87601567 | | 10705 | 6410 | 4351 | 21466 |
S/G/Y/R/B/O |
NT_034898 | AC025522 | 87601567 | 3 |   |   | AC073212 | 87601567 | | 17005 | 6660 | 8361 | 32026 |
S/G/Y/R/B/O |
NT_034898 | AC093333 | 87774837 | 3 | chr8 | NT_034898 | AC011146 | 87871971 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034898 | AC093333 | 87774837 | 3 |   |   | AC055888 | 87601567 | | 91043 | 0 | 0 | 91043 |
S/G/Y/R/B/O |
NT_034898 | AC093333 | 87774837 | 3 |   |   | AC073212 | 87601567 | | 30696 | 16418 | 50536 | 97650 |
S/G/Y/R/B/O |
NT_034898 | AC011146 | 87871971 | 3 | chr8 | NT_034898 | AC025089 | 87965798 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034898 | AC011146 | 87871971 | 3 |   |   | AC055888 | 87601567 | | 25559 | 1525 | 7001 | 34085 |
S/G/Y/R/B/O |
NT_034898 | AC011146 | 87871971 | 3 |   |   | AC073212 | 87601567 | | 16767 | 7384 | 24613 | 48764 |
S/G/Y/R/B/O |
NT_034898 | AC025089 | 87965798 | 3 | chr8 | NT_034898 | AC100799 | 88119652 | 3 | 55162 | 0 | 0 | 55162 |
S/G/Y/R/B/O |
NT_034898 | AC100799 | 88119652 | 3 | chr8 | NT_034898 | AF121898 | 88258639 | 3 | 16646 | 0 | 0 | 16646 |
S/G/Y/R/B/O |
NT_034898 | AC100799 | 88119652 | 3 |   |   | AC003016 | 88119652 | | 79663 | 0 | 0 | 79663 |
S/G/Y/R/B/O |
NT_034898 | AF121898 | 88258639 | 3 | chr8 | NT_034898 | AC100780 | 88388799 | 3 | 0 | 0 | 42432 | 42432 |
S/G/Y/R/B/O |
NT_034898 | AF121898 | 88258639 | 3 |   |   | AC003016 | 88258639 | | 30017 | 0 | 0 | 30017 |
S/G/Y/R/B/O |
NT_034898 | AF121898 | 88258639 | 3 |   |   | AF188025 | 88119652 | | 10096 | 0 | 0 | 10096 |
S/G/Y/R/B/O |
NT_034898 | AC100780 | 88388799 | 3 | chr8 | NT_034898 | AC032002 | 88487511 | 3 | 8511 | 0 | 0 | 8511 |
S/G/Y/R/B/O |
NT_034898 | AC032002 | 88487511 | 3 | chr8 | NT_034898 | AC005066 | 88553370 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034898 | AC005066 | 88553370 | 3 | chr8 | NT_034898 | AC037450 | 88726732 | 3 | 30666 | 0 | 0 | 30666 |
S/G/Y/R/B/O |
NT_034898 | AC005066 | 88553370 | 3 |   |   | AC021991 | 88388799 | | 20781 | 0 | 0 | 20781 |
S/G/Y/R/B/O |
NT_034898 | AC037450 | 88726732 | 3 | chr8 | NT_034898 | AC090575 | 88865939 | 3 | 112467 | 0 | 0 | 112467 |
S/G/Y/R/B/O |
NT_034898 | AC037450 | 88726732 | 3 |   |   | AC021991 | 88553370 | | 102568 | 0 | 16079 | 118647 |
S/G/Y/R/B/O |
NT_034898 | AC037450 | 88726732 | 3 |   |   | AC090149 | 88553370 | | 112410 | 0 | 0 | 112410 |
S/G/Y/R/B/O |
NT_034898 | AC090575 | 88865939 | 3 | chr8 | NT_034898 | AC090980 | 88912888 | 3 | 31602 | 0 | 0 | 31602 |
S/G/Y/R/B/O |
NT_034898 | AC090575 | 88865939 | 3 |   |   | AC021991 | 88865939 | | 95910 | 0 | 39005 | 134915 |
S/G/Y/R/B/O |
NT_034898 | AC090575 | 88865939 | 3 |   |   | AC068611 | 88726732 | | 31647 | 0 | 0 | 31647 |
S/G/Y/R/B/O |
NT_034898 | AC090575 | 88865939 | 3 |   |   | AC090149 | 88726732 | | 159470 | 0 | 0 | 159470 |
S/G/Y/R/B/O |
NT_034898 | AC090980 | 88912888 | 3 | chr8 | NT_034898 | AC090797 | 89064053 | 3 | 118884 | 0 | 0 | 118884 |
S/G/Y/R/B/O |
NT_034898 | AC090980 | 88912888 | 3 |   |   | AC068611 | 88912888 | | 182552 | 0 | 0 | 182552 |
S/G/Y/R/B/O |
NT_034898 | AC090980 | 88912888 | 3 |   |   | AC090149 | 88912888 | | 31602 | 0 | 0 | 31602 |
S/G/Y/R/B/O |
NT_034898 | AC090797 | 89064053 | 3 | chr8 | NT_034898 | AC027259 | 89139088 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034898 | AC090797 | 89064053 | 3 |   |   | AC068611 | 89064053 | | 118594 | 0 | 0 | 118594 |
S/G/Y/R/B/O |
NT_034898 | AC027259 | 89139088 | 3 | chr8 | NT_034898 | AC090568 | 89225414 | 3 | 53808 | 0 | 0 | 53808 |
S/G/Y/R/B/O |
NT_034898 | AC090568 | 89225414 | 3 | chr8 | NT_034898 | AC110012 | 89337905 | 3 | 57805 | 0 | 0 | 57805 |
S/G/Y/R/B/O |
NT_034898 | AC090568 | 89225414 | 3 |   |   | AC024063 | 89225414 | | 53988 | 6480 | 7355 | 67823 |
S/G/Y/R/B/O |
NT_034898 | AC110012 | 89337905 | 3 | chr8 | NT_034898 | AC090578 | 89438934 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034898 | AC110012 | 89337905 | 3 |   |   | AC024063 | 89337905 | | 25041 | 2260 | 5481 | 32782 |
S/G/Y/R/B/O |
NT_034898 | AC090578 | 89438934 | 3 | chr8 | NT_034898 | AC090146 | 89626143 | 3 | 0 | 1171 | 0 | 1171 |
S/G/Y/R/B/O |
NT_034898 | AC090578 | 89438934 | 3 |   |   | AC026089 | 89225414 | | 60916 | 0 | 0 | 60916 |
S/G/Y/R/B/O |
NT_034898 | AC090578 | 89438934 | 3 |   |   | AC079063 | 89225414 | | 43976 | 0 | 0 | 43976 |
S/G/Y/R/B/O |
NT_034898 | AC090146 | 89626143 | 3 | chr8 | NT_034898 | AC091184 | 89783200 | 3 | 42557 | 0 | 0 | 42557 |
S/G/Y/R/B/O |
NT_034898 | AC090146 | 89626143 | 3 |   |   | AC024041 | 89626143 | | 107691 | 2742 | 745 | 111178 |
S/G/Y/R/B/O |
NT_034898 | AC090146 | 89626143 | 3 |   |   | AC079063 | 89626143 | | 126246 | 2157 | 1344 | 129747 |
S/G/Y/R/B/O |
NT_034898 | AC090146 | 89626143 | 3 |   |   | AC079348 | 89626143 | | 42493 | 0 | 0 | 42493 |
S/G/Y/R/B/O |
NT_034898 | AC091184 | 89783200 | 3 | chr8 | NT_034898 | AC018676 | 89883445 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034898 | AC091184 | 89783200 | 3 |   |   | AC023117 | 89783200 | | 29526 | 0 | 2611 | 32137 |
S/G/Y/R/B/O |
NT_034898 | AC091184 | 89783200 | 3 |   |   | AC079063 | 89783200 | | 12671 | 2155 | 0 | 14826 |
S/G/Y/R/B/O |
NT_034898 | AC091184 | 89783200 | 3 |   |   | AC079348 | 89783200 | | 15237 | 0 | 10246 | 25483 |
S/G/Y/R/B/O |
NT_034898 | AC018676 | 89883445 | 3 | chr8 | NT_034898 | AC105026 | 90035061 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034898 | AC018676 | 89883445 | 3 |   |   | AC022485 | 89626143 | | 29340 | 2296 | 0 | 31636 |
S/G/Y/R/B/O |
NT_034898 | AC018676 | 89883445 | 3 |   |   | AC023117 | 89626143 | | 39742 | 0 | 1137 | 40879 |
S/G/Y/R/B/O |
NT_034898 | AC018676 | 89883445 | 3 |   |   | AC110723 | 89626143 | | 17603 | 0 | 2735 | 20338 |
S/G/Y/R/B/O |
NT_034898 | AC105026 | 90035061 | 3 | chr8 | NT_034898 | AC099816 | 90139886 | 3 | 7343 | 0 | 0 | 7343 |
S/G/Y/R/B/O |
NT_034898 | AC105026 | 90035061 | 3 |   |   | AC022485 | 89626143 | | 56802 | 0 | 20343 | 77145 |
S/G/Y/R/B/O |
NT_034898 | AC105026 | 90035061 | 3 |   |   | AC110723 | 90139886 | | 11426 | 2853 | 21386 | 35665 |
S/G/Y/R/B/O |
NT_034898 | AC099816 | 90139886 | 3 | chr8 | NT_034898 | AC069353 | 90283995 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034898 | AC099816 | 90139886 | 3 |   |   | AC024026 | 90139886 | | 70571 | 10419 | 4255 | 85245 |
S/G/Y/R/B/O |
NT_034898 | AC069353 | 90283995 | 3 | chr8 | NT_034898 | AF117829 | 90368540 | 3 | 13409 | 0 | 0 | 13409 |
S/G/Y/R/B/O |
NT_034898 | AC069353 | 90283995 | 3 |   |   | AC024026 | 90035061 | | 92604 | 2767 | 3426 | 98797 |
S/G/Y/R/B/O |
NT_034898 | AF117829 | 90368540 | 3 | chr8 | NT_034898 | AF069291 | 90675367 | 3 | 89903 | 0 | 0 | 89903 |
S/G/Y/R/B/O |
NT_034898 | AF117829 | 90368540 | 3 |   |   | AC025646 | 90368540 | | 48385 | 0 | 0 | 48385 |
S/G/Y/R/B/O |
NT_034898 | AF117829 | 90368540 | 3 |   |   | AC040929 | 90368540 | | 27955 | 0 | 0 | 27955 |
S/G/Y/R/B/O |
NT_034898 | AF117829 | 90368540 | 3 |   |   | AC074178 | 90283995 | | 64111 | 0 | 0 | 64111 |
S/G/Y/R/B/O |
NT_034898 | AF069291 | 90675367 | 3 | chr8 | NT_034898 | AC004612 | 90770362 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034898 | AF069291 | 90675367 | 3 |   |   | AC004003 | 90675367 | | 25889 | 0 | 0 | 25889 |
S/G/Y/R/B/O |
NT_034898 | AF069291 | 90675367 | 3 |   |   | AC074178 | 90675367 | | 107468 | 0 | 0 | 107468 |
S/G/Y/R/B/O |
NT_034898 | AC004612 | 90770362 | 3 | chr8 | NT_034898 | AC123779 | 90806741 | 3 | 0 | 0 | 16653 | 16653 |
S/G/Y/R/B/O |
NT_034898 | AC123779 | 90806741 | 3 | chr8 | NT_034898 | AC004083 | 90958390 | 3 | 54976 | 0 | 0 | 54976 |
S/G/Y/R/B/O |
NT_034898 | AC123779 | 90806741 | 3 |   |   | AF049895 | 90770362 | | 168382 | 0 | 0 | 168382 |
S/G/Y/R/B/O |
NT_034898 | AC123779 | 90806741 | 3 |   |   | AF070717 | 90770362 | | 100648 | 0 | 0 | 100648 |
S/G/Y/R/B/O |
NT_034898 | AC004083 | 90958390 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_034898 | AC004083 | 90958390 | 3 |   |   | AF070717 | 90806741 | | 18425 | 0 | 0 | 18425 |
S/G/Y/R/B/O |
NT_034898 | AC004083 | 90958390 | 3 |   |   | AL807789 | 90806741 | | 21555 | 0 | 0 | 21555 |
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