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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_023736 | AC021523 | 3112355 | 3 | chr8 | NT_023736 | AC087692 | 3282654 | 3 | 17161 | 0 | 0 | 17161 |
S/G/Y/R/B/O |
NT_023736 | AC021523 | 3112355 | 3 |   |   | AC009193 | 1334861 | | 32496 | 0 | 422 | 32918 |
S/G/Y/R/B/O |
NT_023736 | AC021523 | 3112355 | 3 |   |   | AC015573 | 1334861 | | 23685 | 7247 | 0 | 30932 |
S/G/Y/R/B/O |
NT_023736 | AC021523 | 3112355 | 3 |   |   | AC016259 | 1334861 | | 50394 | 0 | 0 | 50394 |
S/G/Y/R/B/O |
NT_023736 | AC087692 | 3282654 | 3 | chr8 | NT_023736 | AC026991 | 3412031 | 3 | 90507 | 0 | 0 | 90507 |
S/G/Y/R/B/O |
NT_023736 | AC087692 | 3282654 | 3 |   |   | AC009193 | 3282654 | | 66064 | 0 | 0 | 66064 |
S/G/Y/R/B/O |
NT_023736 | AC087692 | 3282654 | 3 |   |   | AC015573 | 3282654 | | 61931 | 16139 | 10766 | 88836 |
S/G/Y/R/B/O |
NT_023736 | AC087692 | 3282654 | 3 |   |   | AC016259 | 3282654 | | 45090 | 0 | 0 | 45090 |
S/G/Y/R/B/O |
NT_023736 | AC087692 | 3282654 | 3 |   |   | AC016892 | 3282654 | | 31244 | 0 | 0 | 31244 |
S/G/Y/R/B/O |
NT_023736 | AC026991 | 3412031 | 3 | chr8 | NT_023736 | AC087367 | 3470410 | 3 | 59461 | 0 | 0 | 59461 |
S/G/Y/R/B/O |
NT_023736 | AC026991 | 3412031 | 3 |   |   | AC009193 | 3412031 | | 62265 | 0 | 0 | 62265 |
S/G/Y/R/B/O |
NT_023736 | AC026991 | 3412031 | 3 |   |   | AC015573 | 3412031 | | 35861 | 13055 | 13097 | 62013 |
S/G/Y/R/B/O |
NT_023736 | AC026991 | 3412031 | 3 |   |   | AC016892 | 3412031 | | 109426 | 0 | 0 | 109426 |
S/G/Y/R/B/O |
NT_023736 | AC026991 | 3412031 | 3 |   |   | AC026292 | 3412031 | | 59865 | 0 | 0 | 59865 |
S/G/Y/R/B/O |
NT_023736 | AC087367 | 3470410 | 3 | chr8 | NT_023736 | AC103826 | 3506636 | 3 | 57054 | 0 | 0 | 57054 |
S/G/Y/R/B/O |
NT_023736 | AC087367 | 3470410 | 3 |   |   | AC016892 | 3282654 | | 133356 | 0 | 0 | 133356 |
S/G/Y/R/B/O |
NT_023736 | AC087367 | 3470410 | 3 |   |   | AC026292 | 3282654 | | 133109 | 0 | 0 | 133109 |
S/G/Y/R/B/O |
NT_023736 | AC103826 | 3506636 | 3 | chr8 | NT_023736 | AC022910 | 3582351 | 3 | 0 | 1013 | 0 | 1013 |
S/G/Y/R/B/O |
NT_023736 | AC103826 | 3506636 | 3 |   |   | AC016892 | 3506636 | | 57028 | 0 | 283 | 57311 |
S/G/Y/R/B/O |
NT_023736 | AC103826 | 3506636 | 3 |   |   | AC026292 | 3582351 | | 57043 | 0 | 0 | 57043 |
S/G/Y/R/B/O |
NT_023736 | AC022910 | 3582351 | 3 | chr8 | NT_023736 | AC090199 | 3763281 | 1 | 10744 | 0 | 84309 | 95053 |
S/G/Y/R/B/O |
NT_023736 | AC022910 | 3582351 | 3 | chr8 | NT_023736 | AC022846 | 3776378 | 3 | 33356 | 0 | 0 | 33356 |
S/G/Y/R/B/O |
NT_023736 | AC022910 | 3582351 | 3 |   |   | AF307159 | 3506636 | | 70442 | 0 | 27362 | 97804 |
S/G/Y/R/B/O |
NT_023736 | AC090199 | 3763281 | 1 | chr8 | NT_023736 | AC022846 | 3776378 | 3 | 68595 | 0 | 11542 | 80137 |
S/G/Y/R/B/O |
NT_023736 | AC090199 | 3763281 | 1 | chr8 | NT_023736 | AC113147 | 3900045 | 3 | 20683 | 0 | 479 | 21162 |
S/G/Y/R/B/O |
NT_023736 | AC090199 | 3763281 | 1 |   |   | AC084093 | 3582351 | | 48845 | 0 | 478 | 49323 |
S/G/Y/R/B/O |
NT_023736 | AC090199 | 3763281 | 1 |   |   | AF307159 | 3900045 | | 132691 | 4160 | 23948 | 160799 |
S/G/Y/R/B/O |
NT_023736 | AC022846 | 3776378 | 3 | chr8 | NT_023736 | AC113147 | 3900045 | 3 | 52913 | 0 | 0 | 52913 |
S/G/Y/R/B/O |
NT_023736 | AC022846 | 3776378 | 3 | chr8 | NT_023736 | AC022910 | 3582351 | 3 | 33356 | 0 | 0 | 33356 |
S/G/Y/R/B/O |
NT_023736 | AC022846 | 3776378 | 3 |   |   | AC084093 | 3582351 | | 80905 | 0 | 0 | 80905 |
S/G/Y/R/B/O |
NT_023736 | AC022846 | 3776378 | 3 |   |   | AF307159 | 3900045 | | 74157 | 5043 | 0 | 79200 |
S/G/Y/R/B/O |
NT_023736 | AC113147 | 3900045 | 3 | chr8 | NT_023736 | AC084222 | 4041422 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023736 | AC113147 | 3900045 | 3 | chr8 | NT_023736 | AC090199 | 3763281 | 1 | 20683 | 0 | 479 | 21162 |
S/G/Y/R/B/O |
NT_023736 | AC113147 | 3900045 | 3 |   |   | AC069502 | 3776378 | | 22152 | 2936 | 16071 | 41159 |
S/G/Y/R/B/O |
NT_023736 | AC113147 | 3900045 | 3 |   |   | AC084093 | 3776378 | | 70748 | 0 | 0 | 70748 |
S/G/Y/R/B/O |
NT_023736 | AC113147 | 3900045 | 3 |   |   | AF307159 | 3763281 | | 19331 | 2282 | 0 | 21613 |
S/G/Y/R/B/O |
NT_023736 | AC084222 | 4041422 | 3 | chr8 | NT_023736 | AC009707 | 4143634 | 3 | 128427 | 0 | 0 | 128427 |
S/G/Y/R/B/O |
NT_023736 | AC084222 | 4041422 | 3 |   |   | AC023306 | 4143634 | | 121895 | 0 | 0 | 121895 |
S/G/Y/R/B/O |
NT_023736 | AC084222 | 4041422 | 3 |   |   | AC069502 | 4143634 | | 83463 | 6835 | 20197 | 110495 |
S/G/Y/R/B/O |
NT_023736 | AC084222 | 4041422 | 3 |   |   | AF127019 | 4143634 | | 108294 | 0 | 0 | 108294 |
S/G/Y/R/B/O |
NT_023736 | AC084222 | 4041422 | 3 |   |   | AF289077 | 4143634 | | 98180 | 0 | 0 | 98180 |
S/G/Y/R/B/O |
NT_023736 | AC009707 | 4143634 | 3 | chr8 | NT_023736 | AC009428 | 4191396 | 3 | 31578 | 0 | 0 | 31578 |
S/G/Y/R/B/O |
NT_023736 | AC009707 | 4143634 | 3 |   |   | AC023306 | 4191396 | | 92828 | 0 | 0 | 92828 |
S/G/Y/R/B/O |
NT_023736 | AC009707 | 4143634 | 3 |   |   | AC069502 | 4191396 | | 67149 | 3899 | 16498 | 87546 |
S/G/Y/R/B/O |
NT_023736 | AC009707 | 4143634 | 3 |   |   | AF127019 | 4041422 | | 79119 | 0 | 0 | 79119 |
S/G/Y/R/B/O |
NT_023736 | AC009707 | 4143634 | 3 |   |   | AF289077 | 4041422 | | 144438 | 0 | 0 | 144438 |
S/G/Y/R/B/O |
NT_023736 | AC009428 | 4191396 | 3 | chr8 | NT_023736 | AC027251 | 4326777 | 3 | 20298 | 0 | 0 | 20298 |
S/G/Y/R/B/O |
NT_023736 | AC009428 | 4191396 | 3 |   |   | AC068416 | 4326777 | | 98239 | 0 | 0 | 98239 |
S/G/Y/R/B/O |
NT_023736 | AC009428 | 4191396 | 3 |   |   | AF289077 | 4326777 | | 30464 | 0 | 0 | 30464 |
S/G/Y/R/B/O |
NT_023736 | AC027251 | 4326777 | 3 | chr8 | NT_023736 | AC107945 | 4436856 | 3 | 36018 | 0 | 0 | 36018 |
S/G/Y/R/B/O |
NT_023736 | AC027251 | 4326777 | 3 |   |   | AC068416 | 4191396 | | 85616 | 0 | 0 | 85616 |
S/G/Y/R/B/O |
NT_023736 | AC107945 | 4436856 | 3 | chr8 | NT_023736 | AC010941 | 4447785 | 3 | 5706 | 0 | 0 | 5706 |
S/G/Y/R/B/O |
NT_023736 | AC010941 | 4447785 | 3 | chr8 | NT_023736 | AC090875 | 4613914 | 3 | 99601 | 0 | 0 | 99601 |
S/G/Y/R/B/O |
NT_023736 | AC010941 | 4447785 | 3 |   |   | AC012530 | 4326777 | | 139231 | 0 | 6853 | 146084 |
S/G/Y/R/B/O |
NT_023736 | AC010941 | 4447785 | 3 |   |   | AC073477 | 4326777 | | 53656 | 8179 | 26736 | 88571 |
S/G/Y/R/B/O |
NT_023736 | AC090875 | 4613914 | 3 | chr8 | NT_023736 | AC022068 | 4679527 | 3 | 12100 | 0 | 0 | 12100 |
S/G/Y/R/B/O |
NT_023736 | AC090875 | 4613914 | 3 |   |   | AC012530 | 4447785 | | 98716 | 0 | 0 | 98716 |
S/G/Y/R/B/O |
NT_023736 | AC090875 | 4613914 | 3 |   |   | AC073477 | 4679527 | | 90145 | 10672 | 17445 | 118262 |
S/G/Y/R/B/O |
NT_023736 | AC090875 | 4613914 | 3 |   |   | AC084705 | 4679527 | | 32834 | 0 | 0 | 32834 |
S/G/Y/R/B/O |
NT_023736 | AC022068 | 4679527 | 3 | chr8 | NT_023736 | AC012543 | 4869393 | 3 | 13299 | 0 | 0 | 13299 |
S/G/Y/R/B/O |
NT_023736 | AC022068 | 4679527 | 3 |   |   | AC020986 | 4869393 | | 49403 | 0 | 0 | 49403 |
S/G/Y/R/B/O |
NT_023736 | AC022068 | 4679527 | 3 |   |   | AC084705 | 4869393 | | 156243 | 0 | 0 | 156243 |
S/G/Y/R/B/O |
NT_023736 | AC022068 | 4679527 | 3 |   |   | AC133546 | 4613914 | | 134770 | 0 | 0 | 134770 |
S/G/Y/R/B/O |
NT_023736 | AC012543 | 4869393 | 3 | chr8 | NT_023736 | AC103782 | 5015753 | 3 | 46166 | 0 | 0 | 46166 |
S/G/Y/R/B/O |
NT_023736 | AC012543 | 4869393 | 3 |   |   | AC020986 | 4613914 | | 128750 | 0 | 0 | 128750 |
S/G/Y/R/B/O |
NT_023736 | AC103782 | 5015753 | 3 | chr8 | NT_023736 | AC105998 | 5065708 | 3 | 7915 | 0 | 0 | 7915 |
S/G/Y/R/B/O |
NT_023736 | AC103782 | 5015753 | 3 |   |   | AC020986 | 4869393 | | 15225 | 0 | 0 | 15225 |
S/G/Y/R/B/O |
NT_023736 | AC105998 | 5065708 | 3 | chr8 | NT_023736 | AC019176 | 5134708 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023736 | AC105998 | 5065708 | 3 |   |   | AF202962 | 5015753 | | 28688 | 0 | 0 | 28688 |
S/G/Y/R/B/O |
NT_023736 | AC019176 | 5134708 | 3 | chr8 | NT_023736 | AC100856 | 5256028 | 3 | 0 | 0 | 2119 | 2119 |
S/G/Y/R/B/O |
NT_023736 | AC019176 | 5134708 | 3 |   |   | AF202962 | 5256028 | | 68144 | 0 | 17995 | 86139 |
S/G/Y/R/B/O |
NT_023736 | AC100856 | 5256028 | 3 | chr8 | NT_023736 | AC007718 | 5436588 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023736 | AC007718 | 5436588 | 3 | chr8 | NT_023736 | AC091193 | 5516048 | 3 | 55468 | 0 | 0 | 55468 |
S/G/Y/R/B/O |
NT_023736 | AC007718 | 5436588 | 3 |   |   | AC073478 | 5134708 | | 16617 | 1684 | 18693 | 36994 |
S/G/Y/R/B/O |
NT_023736 | AC091193 | 5516048 | 3 | chr8 | NT_023736 | AC004944 | 5602642 | 3 | 16609 | 0 | 0 | 16609 |
S/G/Y/R/B/O |
NT_023736 | AC091193 | 5516048 | 3 |   |   | AC073478 | 5436588 | | 39353 | 8562 | 58254 | 106169 |
S/G/Y/R/B/O |
NT_023736 | AC004944 | 5602642 | 3 | chr8 | NT_023736 | AC084768 | 5719220 | 3 | 44330 | 0 | 0 | 44330 |
S/G/Y/R/B/O |
NT_023736 | AC004944 | 5602642 | 3 |   |   | AC073478 | 5436588 | | 32434 | 3858 | 19274 | 55566 |
S/G/Y/R/B/O |
NT_023736 | AC004944 | 5602642 | 3 |   |   | AC090500 | 5719220 | | 44854 | 2821 | 33951 | 81626 |
S/G/Y/R/B/O |
NT_023736 | AC084768 | 5719220 | 3 | chr8 | NT_023736 | AC087369 | 5848500 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023736 | AC084768 | 5719220 | 3 |   |   | AC004860 | 5516048 | | 127300 | 0 | 0 | 127300 |
S/G/Y/R/B/O |
NT_023736 | AC084768 | 5719220 | 3 |   |   | AC053529 | 5602642 | | 27712 | 4949 | 2758 | 35419 |
S/G/Y/R/B/O |
NT_023736 | AC084768 | 5719220 | 3 |   |   | AC090500 | 5602642 | | 123192 | 4377 | 23391 | 150960 |
S/G/Y/R/B/O |
NT_023736 | AC087369 | 5848500 | 3 | chr8 | NT_023736 | AC079054 | 5999165 | 3 | 5455 | 0 | 0 | 5455 |
S/G/Y/R/B/O |
NT_023736 | AC087369 | 5848500 | 3 |   |   | AC053529 | 5602642 | | 71580 | 7885 | 6208 | 85673 |
S/G/Y/R/B/O |
NT_023736 | AC079054 | 5999165 | 3 | chr8 | NT_023736 | AC009435 | 6163032 | 3 | 6510 | 0 | 0 | 6510 |
S/G/Y/R/B/O |
NT_023736 | AC079054 | 5999165 | 3 |   |   | AC078836 | 6163032 | | 99853 | 2688 | 0 | 102541 |
S/G/Y/R/B/O |
NT_023736 | AC079054 | 5999165 | 3 |   |   | AL512348 | 5848500 | | 117691 | 0 | 0 | 117691 |
S/G/Y/R/B/O |
NT_023736 | AC079054 | 5999165 | 3 |   |   | AL513474 | 5848500 | | 96517 | 0 | 0 | 96517 |
S/G/Y/R/B/O |
NT_023736 | AC009435 | 6163032 | 3 | chr8 | NT_023736 | AC011727 | 6296180 | 2 | 59163 | 0 | 0 | 59163 |
S/G/Y/R/B/O |
NT_023736 | AC009435 | 6163032 | 3 |   |   | AC078836 | 6296180 | | 51266 | 0 | 37643 | 88909 |
S/G/Y/R/B/O |
NT_023736 | AC011727 | 6296180 | 2 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_023736 | AC011727 | 6296180 | 2 |   |   | AC078836 | 6163032 | | 18755 | 0 | 0 | 18755 |
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