|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_015280 | AC130352 | 12075835 | 2 | chr8 | NT_015280 | AC068587 | 12237991 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_015280 | AC130352 | 12075835 | 2 |   |   | AC068974 | 9235991 | | 61931 | 2031 | 14998 | 78960 |
S/G/Y/R/B/O |
NT_015280 | AC130352 | 12075835 | 2 |   |   | AC068974 | 9235991 | | 61931 | 2031 | 14998 | 78960 |
S/G/Y/R/B/O |
NT_015280 | AC130352 | 12075835 | 2 |   |   | AC083981 | 9235991 | | 50933 | 0 | 1993 | 52926 |
S/G/Y/R/B/O |
NT_015280 | AC130352 | 12075835 | 2 |   |   | AC083981 | 9235991 | | 50933 | 0 | 1993 | 52926 |
S/G/Y/R/B/O |
NT_015280 | AC130352 | 12075835 | 2 |   |   | AC087203 | 9235991 | | 75415 | 1833 | 731 | 77979 |
S/G/Y/R/B/O |
NT_015280 | AC130352 | 12075835 | 2 |   |   | AC087203 | 9235991 | | 75415 | 1833 | 731 | 77979 |
S/G/Y/R/B/O |
NT_015280 | AC130352 | 12075835 | 2 |   |   | AC092766 | 9235991 | | 86800 | 0 | 0 | 86800 |
S/G/Y/R/B/O |
NT_015280 | AC130352 | 12075835 | 2 |   |   | AC092766 | 9235991 | | 86800 | 0 | 0 | 86800 |
S/G/Y/R/B/O |
NT_015280 | AC130352 | 12075835 | 2 |   |   | AC109324 | 9235991 | | 49172 | 0 | 2004 | 51176 |
S/G/Y/R/B/O |
NT_015280 | AC130352 | 12075835 | 2 |   |   | AC109324 | 9235991 | | 49172 | 0 | 2004 | 51176 |
S/G/Y/R/B/O |
NT_015280 | AC068587 | 12237991 | 2 | chr8 | NT_015280 | AC123777 | 12385738 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_015280 | AC068587 | 12237991 | 2 |   |   | AC025126 | 9241289 | | 11442 | 12637 | 21111 | 45190 |
S/G/Y/R/B/O |
NT_015280 | AC068587 | 12237991 | 2 |   |   | AC025126 | 9241289 | | 11442 | 12637 | 21111 | 45190 |
S/G/Y/R/B/O |
NT_015280 | AC068587 | 12237991 | 2 |   |   | AC114681 | 7894358 | | 75802 | 0 | 11446 | 87248 |
S/G/Y/R/B/O |
NT_015280 | AC068587 | 12237991 | 2 |   |   | AC114681 | 7894358 | | 75802 | 0 | 11446 | 87248 |
S/G/Y/R/B/O |
NT_015280 | AC068587 | 12237991 | 2 |   |   | AC130334 | 7894358 | | 24973 | 2956 | 0 | 27929 |
S/G/Y/R/B/O |
NT_015280 | AC068587 | 12237991 | 2 |   |   | AC130334 | 7894358 | | 24973 | 2956 | 0 | 27929 |
S/G/Y/R/B/O |
NT_015280 | AC123777 | 12385738 | 3 | chr8 | NT_015280 | AC090133 | 12561681 | 3 | 144107 | 0 | 0 | 144107 |
S/G/Y/R/B/O |
NT_015280 | AC123777 | 12385738 | 3 |   |   | AC000385 | 7894358 | | 37377 | 0 | 0 | 37377 |
S/G/Y/R/B/O |
NT_015280 | AC123777 | 12385738 | 3 |   |   | AC069321 | 7894358 | | 61858 | 3821 | 36434 | 102113 |
S/G/Y/R/B/O |
NT_015280 | AC090133 | 12561681 | 3 | chr8 | NT_015280 | AC103772 | 12618377 | 1 | 11753 | 0 | 0 | 11753 |
S/G/Y/R/B/O |
NT_015280 | AC090133 | 12561681 | 3 |   |   | AC068920 | 12618377 | | 13049 | 3401 | 6416 | 22866 |
S/G/Y/R/B/O |
NT_015280 | AC090133 | 12561681 | 3 |   |   | AC069321 | 12618377 | | 89164 | 19150 | 46347 | 154661 |
S/G/Y/R/B/O |
NT_015280 | AC103772 | 12618377 | 1 | chr8 | NT_015280 | AF188029 | 12636931 | 2 | 44768 | 0 | 2190 | 46958 |
S/G/Y/R/B/O |
NT_015280 | AC103772 | 12618377 | 1 | chr8 | NT_015280 | AC015641 | 12835685 | 3 | 18459 | 0 | 0 | 18459 |
S/G/Y/R/B/O |
NT_015280 | AC103772 | 12618377 | 1 |   |   | AC068412 | 12835685 | | 51678 | 0 | 5997 | 57675 |
S/G/Y/R/B/O |
NT_015280 | AC103772 | 12618377 | 1 |   |   | AC068920 | 12835685 | | 71563 | 7625 | 43364 | 122552 |
S/G/Y/R/B/O |
NT_015280 | AC103772 | 12618377 | 1 |   |   | AC069321 | 12835685 | | 20483 | 6034 | 16832 | 43349 |
S/G/Y/R/B/O |
NT_015280 | AC103772 | 12618377 | 1 |   |   | AC084085 | 12835685 | | 54347 | 0 | 29943 | 84290 |
S/G/Y/R/B/O |
NT_015280 | AF188029 | 12636931 | 2 | chr8 | NT_015280 | AC015641 | 12835685 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_015280 | AF188029 | 12636931 | 2 |   |   | AC068412 | 12636931 | | 26470 | 0 | 0 | 26470 |
S/G/Y/R/B/O |
NT_015280 | AF188029 | 12636931 | 2 |   |   | AC068920 | 12636931 | | 43415 | 5826 | 19506 | 68747 |
S/G/Y/R/B/O |
NT_015280 | AF188029 | 12636931 | 2 |   |   | AC069321 | 12636931 | | 18099 | 11693 | 11262 | 41054 |
S/G/Y/R/B/O |
NT_015280 | AF188029 | 12636931 | 2 |   |   | AC084085 | 12636931 | | 19622 | 0 | 0 | 19622 |
S/G/Y/R/B/O |
NT_015280 | AC015641 | 12835685 | 3 | chr8 | NT_015280 | AC106845 | 12990265 | 3 | 16699 | 0 | 0 | 16699 |
S/G/Y/R/B/O |
NT_015280 | AC015641 | 12835685 | 3 | chr8 | NT_015280 | AC103772 | 12618377 | 1 | 18459 | 0 | 0 | 18459 |
S/G/Y/R/B/O |
NT_015280 | AC015641 | 12835685 | 3 |   |   | AC011047 | 12618377 | | 11392 | 4035 | 0 | 15427 |
S/G/Y/R/B/O |
NT_015280 | AC015641 | 12835685 | 3 |   |   | AC013749 | 12618377 | | 16291 | 0 | 303 | 16594 |
S/G/Y/R/B/O |
NT_015280 | AC015641 | 12835685 | 3 |   |   | AC068412 | 12618377 | | 99716 | 0 | 0 | 99716 |
S/G/Y/R/B/O |
NT_015280 | AC015641 | 12835685 | 3 |   |   | AC068920 | 12618377 | | 46300 | 0 | 12798 | 59098 |
S/G/Y/R/B/O |
NT_015280 | AC015641 | 12835685 | 3 |   |   | AC084085 | 12618377 | | 149687 | 0 | 0 | 149687 |
S/G/Y/R/B/O |
NT_015280 | AC106845 | 12990265 | 3 | chr8 | NT_015280 | AC019270 | 13140242 | 3 | 13225 | 0 | 0 | 13225 |
S/G/Y/R/B/O |
NT_015280 | AC106845 | 12990265 | 3 |   |   | AC011047 | 12990265 | | 116219 | 6910 | 24367 | 147496 |
S/G/Y/R/B/O |
NT_015280 | AC106845 | 12990265 | 3 |   |   | AC013749 | 12990265 | | 165481 | 0 | 303 | 165784 |
S/G/Y/R/B/O |
NT_015280 | AC106845 | 12990265 | 3 |   |   | AC074186 | 13140242 | | 63171 | 0 | 37617 | 100788 |
S/G/Y/R/B/O |
NT_015280 | AC106845 | 12990265 | 3 |   |   | AC084085 | 13140242 | | 11847 | 0 | 0 | 11847 |
S/G/Y/R/B/O |
NT_015280 | AC019270 | 13140242 | 3 | chr8 | NT_015280 | AC022844 | 13271830 | 3 | 86174 | 0 | 0 | 86174 |
S/G/Y/R/B/O |
NT_015280 | AC019270 | 13140242 | 3 |   |   | AC011047 | 13140242 | | 13223 | 0 | 0 | 13223 |
S/G/Y/R/B/O |
NT_015280 | AC019270 | 13140242 | 3 |   |   | AC013749 | 13140242 | | 13225 | 0 | 0 | 13225 |
S/G/Y/R/B/O |
NT_015280 | AC019270 | 13140242 | 3 |   |   | AC074186 | 13271830 | | 36794 | 4818 | 3490 | 45102 |
S/G/Y/R/B/O |
NT_015280 | AC022844 | 13271830 | 3 | chr8 | NT_015280 | AC022832 | 13367181 | 3 | 20917 | 0 | 0 | 20917 |
S/G/Y/R/B/O |
NT_015280 | AC022832 | 13367181 | 3 | chr8 | NT_015280 | AC022880 | 13512499 | 3 | 14423 | 0 | 0 | 14423 |
S/G/Y/R/B/O |
NT_015280 | AC022880 | 13512499 | 3 | chr8 | NT_015280 | AC022690 | 13664299 | 3 | 29227 | 0 | 0 | 29227 |
S/G/Y/R/B/O |
NT_015280 | AC022690 | 13664299 | 3 | chr8 | NT_015280 | AC023538 | 13813386 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_015280 | AC022690 | 13664299 | 3 |   |   | AC023072 | 13512499 | | 28381 | 6428 | 5207 | 40016 |
S/G/Y/R/B/O |
NT_015280 | AC022690 | 13664299 | 3 |   |   | AC068788 | 13512499 | | 23043 | 0 | 0 | 23043 |
S/G/Y/R/B/O |
NT_015280 | AC023538 | 13813386 | 3 | chr8 | NT_015280 | AC022039 | 13967078 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_015280 | AC023538 | 13813386 | 3 |   |   | AC023072 | 13512499 | | 70232 | 15540 | 26112 | 111884 |
S/G/Y/R/B/O |
NT_015280 | AC022039 | 13967078 | 3 | chr8 | NT_015280 | AC009898 | 14061161 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_015280 | AC022039 | 13967078 | 3 |   |   | AC022700 | 13512499 | | 17642 | 0 | 0 | 17642 |
S/G/Y/R/B/O |
NT_015280 | AC022039 | 13967078 | 3 |   |   | AC023072 | 13512499 | | 18336 | 12143 | 3302 | 33781 |
S/G/Y/R/B/O |
NT_015280 | AC022039 | 13967078 | 3 |   |   | AC068788 | 13512499 | | 15449 | 0 | 0 | 15449 |
S/G/Y/R/B/O |
NT_015280 | AC009898 | 14061161 | 3 | chr8 | NT_015280 | AC107965 | 14185965 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_015280 | AC107965 | 14185965 | 3 | chr8 | NT_015280 | AC021760 | 14232961 | 3 | 38400 | 0 | 0 | 38400 |
S/G/Y/R/B/O |
NT_015280 | AC021760 | 14232961 | 3 | chr8 | NT_015280 | AC040926 | 14377541 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_015280 | AC040926 | 14377541 | 3 | chr8 | NT_015280 | AC084838 | 14570971 | 3 | 40458 | 0 | 0 | 40458 |
S/G/Y/R/B/O |
NT_015280 | AC040926 | 14377541 | 3 |   |   | AC015502 | 14185965 | | 111683 | 0 | 0 | 111683 |
S/G/Y/R/B/O |
NT_015280 | AC084838 | 14570971 | 3 | chr8 | NT_015280 | AC022666 | 14714077 | 3 | 12238 | 0 | 0 | 12238 |
S/G/Y/R/B/O |
NT_015280 | AC084838 | 14570971 | 3 |   |   | AC015502 | 14570971 | | 103126 | 0 | 0 | 103126 |
S/G/Y/R/B/O |
NT_015280 | AC022666 | 14714077 | 3 | chr8 | NT_015280 | AC106857 | 14852551 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_015280 | AC106857 | 14852551 | 3 | chr8 | NT_015280 | AC019215 | 14867078 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_015280 | AC019215 | 14867078 | 3 | chr8 | NT_015280 | AC020992 | 15045124 | 3 | 66251 | 0 | 0 | 66251 |
S/G/Y/R/B/O |
NT_015280 | AC020992 | 15045124 | 3 | chr8 | NT_015280 | AC103851 | 15108118 | 3 | 12631 | 0 | 0 | 12631 |
S/G/Y/R/B/O |
NT_015280 | AC103851 | 15108118 | 3 | chr8 | NT_015280 | AC091559 | 15207152 | 3 | 11260 | 0 | 0 | 11260 |
S/G/Y/R/B/O |
NT_015280 | AC103851 | 15108118 | 3 |   |   | AC025530 | 15045124 | | 11251 | 0 | 0 | 11251 |
S/G/Y/R/B/O |
NT_015280 | AC091559 | 15207152 | 3 | chr8 | NT_015280 | AC010656 | 15362227 | 3 | 0 | 1440 | 0 | 1440 |
S/G/Y/R/B/O |
NT_015280 | AC091559 | 15207152 | 3 |   |   | AC025530 | 15362227 | | 61751 | 2323 | 46414 | 110488 |
S/G/Y/R/B/O |
NT_015280 | AC010656 | 15362227 | 3 | chr8 | NT_015280 | AC100850 | 15499819 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_015280 | AC010656 | 15362227 | 3 |   |   | AC016349 | 15108118 | | 83363 | 0 | 0 | 83363 |
S/G/Y/R/B/O |
NT_015280 | AC010656 | 15362227 | 3 |   |   | AC087581 | 15108118 | | 113510 | 0 | 0 | 113510 |
S/G/Y/R/B/O |
NT_015280 | AC100850 | 15499819 | 3 | chr8 | NT_015280 | AC019292 | 15547318 | 3 | 0 | 0 | 8844 | 8844 |
S/G/Y/R/B/O |
NT_015280 | AC019292 | 15547318 | 3 | chr8 | NT_015280 | AC018437 | 15725592 | 3 | 0 | 0 | 29805 | 29805 |
S/G/Y/R/B/O |
NT_015280 | AC019292 | 15547318 | 3 |   |   | AC084127 | 15725592 | | 16433 | 0 | 8706 | 25139 |
S/G/Y/R/B/O |
NT_015280 | AC019292 | 15547318 | 3 |   |   | AF126483 | 15499819 | | 72958 | 0 | 0 | 72958 |
S/G/Y/R/B/O |
NT_015280 | AC018437 | 15725592 | 3 | chr8 | NT_015280 | AC023396 | 15887991 | 3 | 31610 | 0 | 0 | 31610 |
S/G/Y/R/B/O |
NT_015280 | AC023396 | 15887991 | 3 | chr8 | NT_015280 | AC087360 | 16022072 | 3 | 14118 | 0 | 0 | 14118 |
S/G/Y/R/B/O |
NT_015280 | AC023396 | 15887991 | 3 |   |   | AC022526 | 15725592 | | 47688 | 3629 | 27369 | 78686 |
S/G/Y/R/B/O |
NT_015280 | AC087360 | 16022072 | 3 | chr8 | NT_015280 | AC010785 | 16104727 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_015280 | AC010785 | 16104727 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_015280 | AC010785 | 16104727 | 3 |   |   | AC022526 | 15887991 | | 20603 | 0 | 0 | 20603 |
| |
|
|
|