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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_008176 | AC007991 | 39746680 | 3 | chr8 | NT_008176 | AC087518 | 39895688 | 3 | 57548 | 0 | 0 | 57548 |
S/G/Y/R/B/O |
NT_008176 | AC007991 | 39746680 | 3 |   |   | AF302687 | 39895688 | | 26954 | 0 | 0 | 26954 |
S/G/Y/R/B/O |
NT_008176 | AC087518 | 39895688 | 3 | chr8 | NT_008176 | AC022733 | 40006459 | 3 | 85779 | 0 | 0 | 85779 |
S/G/Y/R/B/O |
NT_008176 | AC087518 | 39895688 | 3 |   |   | AF302687 | 40006459 | | 58844 | 1698 | 1041 | 61583 |
S/G/Y/R/B/O |
NT_008176 | AC022733 | 40006459 | 3 | chr8 | NT_008176 | AC102944 | 40095879 | 3 | 46718 | 0 | 0 | 46718 |
S/G/Y/R/B/O |
NT_008176 | AC022733 | 40006459 | 3 |   |   | AC019331 | 40006459 | | 29598 | 1641 | 0 | 31239 |
S/G/Y/R/B/O |
NT_008176 | AC022733 | 40006459 | 3 |   |   | AC091560 | 39895688 | | 31285 | 0 | 0 | 31285 |
S/G/Y/R/B/O |
NT_008176 | AC022733 | 40006459 | 3 |   |   | AF290942 | 40095879 | | 46715 | 0 | 0 | 46715 |
S/G/Y/R/B/O |
NT_008176 | AC102944 | 40095879 | 3 | chr8 | NT_008176 | AC105999 | 40193492 | 3 | 7412 | 0 | 0 | 7412 |
S/G/Y/R/B/O |
NT_008176 | AC102944 | 40095879 | 3 |   |   | AC019331 | 40095879 | | 71467 | 1639 | 18582 | 91688 |
S/G/Y/R/B/O |
NT_008176 | AC102944 | 40095879 | 3 |   |   | AF290942 | 40193492 | | 80533 | 0 | 0 | 80533 |
S/G/Y/R/B/O |
NT_008176 | AC105999 | 40193492 | 3 | chr8 | NT_008176 | AC010857 | 40291570 | 3 | 33407 | 0 | 0 | 33407 |
S/G/Y/R/B/O |
NT_008176 | AC105999 | 40193492 | 3 |   |   | AC019331 | 40291570 | | 58436 | 0 | 0 | 58436 |
S/G/Y/R/B/O |
NT_008176 | AC105999 | 40193492 | 3 |   |   | AC091560 | 40291570 | | 68700 | 0 | 0 | 68700 |
S/G/Y/R/B/O |
NT_008176 | AC105999 | 40193492 | 3 |   |   | AF165142 | 40095879 | | 105472 | 0 | 0 | 105472 |
S/G/Y/R/B/O |
NT_008176 | AC010857 | 40291570 | 3 | chr8 | NT_008176 | AC018796 | 40413147 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_008176 | AC010857 | 40291570 | 3 |   |   | AC084224 | 40413147 | | 53317 | 1866 | 1526 | 56709 |
S/G/Y/R/B/O |
NT_008176 | AC010857 | 40291570 | 3 |   |   | AC087754 | 40413147 | | 59234 | 0 | 912 | 60146 |
S/G/Y/R/B/O |
NT_008176 | AC010857 | 40291570 | 3 |   |   | AF165142 | 40193492 | | 33402 | 0 | 0 | 33402 |
S/G/Y/R/B/O |
NT_008176 | AC018796 | 40413147 | 3 | chr8 | NT_008176 | AC104864 | 40559335 | 3 | 27799 | 0 | 0 | 27799 |
S/G/Y/R/B/O |
NT_008176 | AC018796 | 40413147 | 3 |   |   | AC016344 | 40291570 | | 100954 | 5180 | 3893 | 110027 |
S/G/Y/R/B/O |
NT_008176 | AC018796 | 40413147 | 3 |   |   | AC084224 | 40291570 | | 43383 | 0 | 11214 | 54597 |
S/G/Y/R/B/O |
NT_008176 | AC104864 | 40559335 | 3 | chr8 | NT_008176 | AC048387 | 40700243 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008176 | AC048387 | 40700243 | 2 | chr8 | NT_008176 | AC087274 | 40824240 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008176 | AC087274 | 40824240 | 3 | chr8 | NT_008176 | AC104393 | 41016026 | 3 | 7024 | 0 | 0 | 7024 |
S/G/Y/R/B/O |
NT_008176 | AC087274 | 40824240 | 3 |   |   | AC020736 | 40413147 | | 52095 | 1712 | 65510 | 119317 |
S/G/Y/R/B/O |
NT_008176 | AC104393 | 41016026 | 3 | chr8 | NT_008176 | AC016868 | 41197258 | 3 | 18509 | 0 | 0 | 18509 |
S/G/Y/R/B/O |
NT_008176 | AC016868 | 41197258 | 3 | chr8 | NT_008176 | AC009630 | 41334438 | 3 | 18906 | 0 | 0 | 18906 |
S/G/Y/R/B/O |
NT_008176 | AC016868 | 41197258 | 3 |   |   | AC103846 | 41334438 | | 10475 | 0 | 0 | 10475 |
S/G/Y/R/B/O |
NT_008176 | AC009630 | 41334438 | 3 | chr8 | NT_008176 | AC113133 | 41535150 | 3 | 0 | 1659 | 0 | 1659 |
S/G/Y/R/B/O |
NT_008176 | AC009630 | 41334438 | 3 |   |   | AC024027 | 41197258 | | 32371 | 0 | 1544 | 33915 |
S/G/Y/R/B/O |
NT_008176 | AC113133 | 41535150 | 3 | chr8 | NT_008176 | AC008025 | 41670881 | 1 | 15139 | 0 | 0 | 15139 |
S/G/Y/R/B/O |
NT_008176 | AC113133 | 41535150 | 3 |   |   | AC015649 | 41334438 | | 119480 | 0 | 13480 | 132960 |
S/G/Y/R/B/O |
NT_008176 | AC113133 | 41535150 | 3 |   |   | AC024027 | 41334438 | | 92912 | 7626 | 17068 | 117606 |
S/G/Y/R/B/O |
NT_008176 | AC008025 | 41670881 | 1 | chr8 | NT_008176 | AC027702 | 41710286 | 2 | 72154 | 0 | 33916 | 106070 |
S/G/Y/R/B/O |
NT_008176 | AC008025 | 41670881 | 1 | chr8 | NT_008176 | AC090571 | 41735613 | 3 | 44016 | 0 | 36471 | 80487 |
S/G/Y/R/B/O |
NT_008176 | AC008025 | 41670881 | 1 |   |   | AC015649 | 41334438 | | 11190 | 0 | 0 | 11190 |
S/G/Y/R/B/O |
NT_008176 | AC008025 | 41670881 | 1 |   |   | AC023045 | 41334438 | | 27907 | 11139 | 12539 | 51585 |
S/G/Y/R/B/O |
NT_008176 | AC027702 | 41710286 | 2 | chr8 | NT_008176 | AC090571 | 41735613 | 3 | 81611 | 0 | 0 | 81611 |
S/G/Y/R/B/O |
NT_008176 | AC027702 | 41710286 | 2 |   |   | AC023045 | 41670881 | | 27888 | 11148 | 10164 | 49200 |
S/G/Y/R/B/O |
NT_008176 | AC027702 | 41710286 | 2 |   |   | AC023045 | 41670881 | | 27888 | 11148 | 10164 | 49200 |
S/G/Y/R/B/O |
NT_008176 | AC090571 | 41735613 | 3 | chr8 | NT_008176 | AC103724 | 41954240 | 3 | 51478 | 0 | 0 | 51478 |
S/G/Y/R/B/O |
NT_008176 | AC090571 | 41735613 | 3 | chr8 | NT_008176 | AC008025 | 41670881 | 1 | 44016 | 0 | 36471 | 80487 |
S/G/Y/R/B/O |
NT_008176 | AC090571 | 41735613 | 3 |   |   | AC023045 | 41670881 | | 120994 | 19276 | 18089 | 158359 |
S/G/Y/R/B/O |
NT_008176 | AC103724 | 41954240 | 3 | chr8 | NT_008176 | AC083973 | 42065252 | 2 | 10222 | 0 | 0 | 10222 |
S/G/Y/R/B/O |
NT_008176 | AC103724 | 41954240 | 3 |   |   | AC023045 | 41954240 | | 22759 | 2781 | 8964 | 34504 |
S/G/Y/R/B/O |
NT_008176 | AC103724 | 41954240 | 3 |   |   | AF186995 | 41735613 | | 13356 | 0 | 0 | 13356 |
S/G/Y/R/B/O |
NT_008176 | AC083973 | 42065252 | 2 | chr8 | NT_008176 | AC107885 | 42187626 | 2 | 51738 | 0 | 0 | 51738 |
S/G/Y/R/B/O |
NT_008176 | AC083973 | 42065252 | 2 |   |   | AF170802 | 42187626 | | 15216 | 0 | 0 | 15216 |
S/G/Y/R/B/O |
NT_008176 | AC083973 | 42065252 | 2 |   |   | AF186995 | 42187626 | | 42244 | 0 | 0 | 42244 |
S/G/Y/R/B/O |
NT_008176 | AC083973 | 42065252 | 2 |   |   | AF271407 | 42187626 | | 102387 | 0 | 22036 | 124423 |
S/G/Y/R/B/O |
NT_008176 | AC107885 | 42187626 | 2 | chr8 | NT_008176 | AC093367 | 42346043 | 1 | 4617 | 0 | 0 | 4617 |
S/G/Y/R/B/O |
NT_008176 | AC107885 | 42187626 | 2 |   |   | AF170802 | 42346043 | | 37764 | 2229 | 50749 | 90742 |
S/G/Y/R/B/O |
NT_008176 | AC107885 | 42187626 | 2 |   |   | AF216673 | 42346043 | | 14066 | 4885 | 10759 | 29710 |
S/G/Y/R/B/O |
NT_008176 | AC107885 | 42187626 | 2 |   |   | AF271407 | 42346043 | | 25724 | 0 | 0 | 25724 |
S/G/Y/R/B/O |
NT_008176 | AC093367 | 42346043 | 1 | chr8 | NT_008176 | AC090739 | 42435767 | 3 | 59754 | 0 | 24323 | 84077 |
S/G/Y/R/B/O |
NT_008176 | AC090739 | 42435767 | 3 | chr8 | NT_008176 | AC103843 | 42624815 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008176 | AC090739 | 42435767 | 3 |   |   | AC018689 | 42187626 | | 32317 | 1569 | 70421 | 104307 |
S/G/Y/R/B/O |
NT_008176 | AC103843 | 42624815 | 3 | chr8 | NT_008176 | AC087533 | 42658823 | 3 | 11988 | 0 | 0 | 11988 |
S/G/Y/R/B/O |
NT_008176 | AC087533 | 42658823 | 3 | chr8 | NT_008176 | AC009634 | 42801006 | 3 | 65885 | 0 | 0 | 65885 |
S/G/Y/R/B/O |
NT_008176 | AC087533 | 42658823 | 3 |   |   | AC011721 | 42801006 | | 62699 | 1550 | 24255 | 88504 |
S/G/Y/R/B/O |
NT_008176 | AC087533 | 42658823 | 3 |   |   | AF311104 | 42624815 | | 103394 | 3388 | 24494 | 131276 |
S/G/Y/R/B/O |
NT_008176 | AC009634 | 42801006 | 3 | chr8 | NT_008176 | AC110275 | 42940756 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008176 | AC009634 | 42801006 | 3 |   |   | AC011721 | 42624815 | | 73637 | 1550 | 15802 | 90989 |
S/G/Y/R/B/O |
NT_008176 | AC009634 | 42801006 | 3 |   |   | AC073268 | 42624815 | | 27286 | 0 | 38142 | 65428 |
S/G/Y/R/B/O |
NT_008176 | AC009634 | 42801006 | 3 |   |   | AF311104 | 42658823 | | 37075 | 4458 | 10406 | 51939 |
S/G/Y/R/B/O |
NT_008176 | AC110275 | 42940756 | 2 | chr8 | NT_008176 | AC113191 | 42969624 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008176 | AC110275 | 42940756 | 2 |   |   | AC011721 | 42658823 | | 34287 | 0 | 0 | 34287 |
S/G/Y/R/B/O |
NT_008176 | AC110275 | 42940756 | 2 |   |   | AC011721 | 42658823 | | 34287 | 0 | 0 | 34287 |
S/G/Y/R/B/O |
NT_008176 | AC110275 | 42940756 | 2 |   |   | AC073268 | 42658823 | | 65817 | 0 | 39503 | 105320 |
S/G/Y/R/B/O |
NT_008176 | AC110275 | 42940756 | 2 |   |   | AC073268 | 42658823 | | 65817 | 0 | 39503 | 105320 |
S/G/Y/R/B/O |
NT_008176 | AC113191 | 42969624 | 2 | chr8 | NT_008176 | AC022616 | 43135754 | 3 | 19820 | 0 | 0 | 19820 |
S/G/Y/R/B/O |
NT_008176 | AC113191 | 42969624 | 2 |   |   | AC084722 | 43135754 | | 15335 | 8678 | 9958 | 33971 |
S/G/Y/R/B/O |
NT_008176 | AC113191 | 42969624 | 2 |   |   | AC084722 | 43135754 | | 15335 | 8678 | 9958 | 33971 |
S/G/Y/R/B/O |
NT_008176 | AC022616 | 43135754 | 3 | chr8 | NT_008176 | AC127487 | 43289136 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008176 | AC022616 | 43135754 | 3 |   |   | AC084722 | 43135754 | | 41900 | 2568 | 5569 | 50037 |
S/G/Y/R/B/O |
NT_008176 | AC022616 | 43135754 | 3 |   |   | AC084722 | 43135754 | | 41900 | 2568 | 5569 | 50037 |
S/G/Y/R/B/O |
NT_008176 | AC127487 | 43289136 | 3 | chr8 | NT_008176 | AC134698 | 43350591 | 1 | 0 | 0 | 8095 | 8095 |
S/G/Y/R/B/O |
NT_008176 | AC134698 | 43350591 | 1 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_008176 | AC134698 | 43350591 | 1 |   |   | AC079144 | 853487 | | 19619 | 0 | 8145 | 27764 |
S/G/Y/R/B/O |
NT_008176 | AC134698 | 43350591 | 1 |   |   | AC079144 | 853487 | | 19619 | 0 | 8145 | 27764 |
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