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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_008055 | AC102802 | 75328814 | 3 | chr8 | NT_008055 | AC115837 | 75485392 | 3 | 0 | 0 | 27197 | 27197 |
S/G/Y/R/B/O |
NT_008055 | AC102802 | 75328814 | 3 | chr8 | NT_008183 | AC103952 | 75192107 | 3 | 36883 | 0 | 0 | 36883 |
S/G/Y/R/B/O |
NT_008055 | AC102802 | 75328814 | 3 |   |   | AC009629 | 75108651 | | 34003 | 0 | 418 | 34421 |
S/G/Y/R/B/O |
NT_008055 | AC102802 | 75328814 | 3 |   |   | AC087532 | 75108651 | | 36556 | 0 | 819 | 37375 |
S/G/Y/R/B/O |
NT_008055 | AC102802 | 75328814 | 3 |   |   | AC090903 | 75108651 | | 36621 | 0 | 0 | 36621 |
S/G/Y/R/B/O |
NT_008055 | AC102802 | 75328814 | 3 |   |   | AF303735 | 75485392 | | 36880 | 0 | 0 | 36880 |
S/G/Y/R/B/O |
NT_008055 | AC102802 | 75328814 | 3 |   |   | AF305874 | 75485392 | | 31711 | 0 | 0 | 31711 |
S/G/Y/R/B/O |
NT_008055 | AC115837 | 75485392 | 3 | chr8 | NT_008055 | AC026616 | 75618803 | 3 | 51585 | 0 | 0 | 51585 |
S/G/Y/R/B/O |
NT_008055 | AC115837 | 75485392 | 3 |   |   | AC009629 | 75485392 | | 84143 | 5550 | 0 | 89693 |
S/G/Y/R/B/O |
NT_008055 | AC115837 | 75485392 | 3 |   |   | AC016126 | 75485392 | | 22555 | 25595 | 10467 | 58617 |
S/G/Y/R/B/O |
NT_008055 | AC115837 | 75485392 | 3 |   |   | AC090903 | 75618803 | | 31715 | 0 | 57804 | 89519 |
S/G/Y/R/B/O |
NT_008055 | AC115837 | 75485392 | 3 |   |   | AF305874 | 75328814 | | 67026 | 0 | 8741 | 75767 |
S/G/Y/R/B/O |
NT_008055 | AC026616 | 75618803 | 3 | chr8 | NT_008055 | AC011632 | 75725640 | 3 | 49996 | 0 | 0 | 49996 |
S/G/Y/R/B/O |
NT_008055 | AC026616 | 75618803 | 3 |   |   | AC009629 | 75328814 | | 42717 | 1205 | 0 | 43922 |
S/G/Y/R/B/O |
NT_008055 | AC011632 | 75725640 | 3 | chr8 | NT_008055 | AC102801 | 75851387 | 3 | 63481 | 0 | 0 | 63481 |
S/G/Y/R/B/O |
NT_008055 | AC011632 | 75725640 | 3 |   |   | AC084336 | 75618803 | | 118468 | 0 | 0 | 118468 |
S/G/Y/R/B/O |
NT_008055 | AC102801 | 75851387 | 3 | chr8 | NT_008055 | AC100782 | 75907576 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008055 | AC102801 | 75851387 | 3 |   |   | AC020570 | 75725640 | | 28165 | 0 | 17344 | 45509 |
S/G/Y/R/B/O |
NT_008055 | AC102801 | 75851387 | 3 |   |   | AC084336 | 75725640 | | 101044 | 0 | 0 | 101044 |
S/G/Y/R/B/O |
NT_008055 | AC100782 | 75907576 | 3 | chr8 | NT_008055 | AC022274 | 76045188 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008055 | AC100782 | 75907576 | 3 |   |   | AC020570 | 75725640 | | 60453 | 5411 | 71390 | 137254 |
S/G/Y/R/B/O |
NT_008055 | AC100782 | 75907576 | 3 |   |   | AC037484 | 75725640 | | 24654 | 0 | 78823 | 103477 |
S/G/Y/R/B/O |
NT_008055 | AC022274 | 76045188 | 3 | chr8 | NT_008055 | AC105218 | 76202661 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008055 | AC022274 | 76045188 | 3 |   |   | AC037484 | 75725640 | | 45884 | 0 | 0 | 45884 |
S/G/Y/R/B/O |
NT_008055 | AC022274 | 76045188 | 3 |   |   | AC044874 | 75725640 | | 48217 | 0 | 1104 | 49321 |
S/G/Y/R/B/O |
NT_008055 | AC105218 | 76202661 | 3 | chr8 | NT_008055 | AC021500 | 76313391 | 3 | 67080 | 0 | 0 | 67080 |
S/G/Y/R/B/O |
NT_008055 | AC105218 | 76202661 | 3 |   |   | AC026586 | 76313391 | | 118903 | 1680 | 2010 | 122593 |
S/G/Y/R/B/O |
NT_008055 | AC105218 | 76202661 | 3 |   |   | AC044874 | 76313391 | | 13660 | 0 | 19567 | 33227 |
S/G/Y/R/B/O |
NT_008055 | AC105218 | 76202661 | 3 |   |   | AF276756 | 241897624 | | 19522 | 1498 | 46515 | 67535 |
S/G/Y/R/B/O |
NT_008055 | AC021500 | 76313391 | 3 | chr8 | NT_008055 | AC040917 | 76406659 | 3 | 0 | 768 | 0 | 768 |
S/G/Y/R/B/O |
NT_008055 | AC021500 | 76313391 | 3 |   |   | AC026586 | 241897624 | | 125056 | 0 | 0 | 125056 |
S/G/Y/R/B/O |
NT_008055 | AC021500 | 76313391 | 3 |   |   | AF207953 | 76202661 | | 14424 | 0 | 0 | 14424 |
S/G/Y/R/B/O |
NT_008055 | AC021500 | 76313391 | 3 |   |   | AF276756 | 76202661 | | 102597 | 0 | 44605 | 147202 |
S/G/Y/R/B/O |
NT_008055 | AC040917 | 76406659 | 3 | chr8 | NT_008055 | AC018390 | 76563922 | 3 | 77480 | 0 | 0 | 77480 |
S/G/Y/R/B/O |
NT_008055 | AC040917 | 76406659 | 3 |   |   | AC061989 | 76313391 | | 111867 | 0 | 0 | 111867 |
S/G/Y/R/B/O |
NT_008055 | AC040917 | 76406659 | 3 |   |   | AF207953 | 43844987 | | 98269 | 0 | 0 | 98269 |
S/G/Y/R/B/O |
NT_008055 | AC018390 | 76563922 | 3 | chr8 | NT_008055 | AC016194 | 76653260 | 3 | 71438 | 0 | 0 | 71438 |
S/G/Y/R/B/O |
NT_008055 | AC018390 | 76563922 | 3 |   |   | AC061989 | 76406659 | | 31905 | 0 | 0 | 31905 |
S/G/Y/R/B/O |
NT_008055 | AC018390 | 76563922 | 3 |   |   | AF207953 | 43844987 | | 18309 | 0 | 0 | 18309 |
S/G/Y/R/B/O |
NT_008055 | AC016194 | 76653260 | 3 | chr8 | NT_008055 | AC021842 | 76728515 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008055 | AC016194 | 76653260 | 3 |   |   | AF188032 | 76563922 | | 32334 | 0 | 0 | 32334 |
S/G/Y/R/B/O |
NT_008055 | AC021842 | 76728515 | 3 | chr8 | NT_008055 | AC021311 | 76915394 | 3 | 0 | 0 | 7462 | 7462 |
S/G/Y/R/B/O |
NT_008055 | AC021842 | 76728515 | 3 |   |   | AC024043 | 76915394 | | 51480 | 2052 | 22489 | 76021 |
S/G/Y/R/B/O |
NT_008055 | AC021842 | 76728515 | 3 |   |   | AF188032 | 76915394 | | 22398 | 0 | 0 | 22398 |
S/G/Y/R/B/O |
NT_008055 | AC021311 | 76915394 | 3 | chr8 | NT_008055 | AC011029 | 77059589 | 3 | 0 | 742 | 0 | 742 |
S/G/Y/R/B/O |
NT_008055 | AC021311 | 76915394 | 3 |   |   | AC024043 | 76728515 | | 54145 | 10412 | 0 | 64557 |
S/G/Y/R/B/O |
NT_008055 | AC011029 | 77059589 | 3 | chr8 | NT_008055 | AC073510 | 77219970 | 3 | 55190 | 0 | 0 | 55190 |
S/G/Y/R/B/O |
NT_008055 | AC073510 | 77219970 | 3 | chr8 | NT_008055 | AC067773 | 77297841 | 3 | 2070 | 0 | 0 | 2070 |
S/G/Y/R/B/O |
NT_008055 | AC067773 | 77297841 | 3 | chr8 | NT_008055 | AC013509 | 77470168 | 3 | 118882 | 0 | 0 | 118882 |
S/G/Y/R/B/O |
NT_008055 | AC013509 | 77470168 | 3 | chr8 | NT_008055 | AC134776 | 77502830 | 1 | 19622 | 1548 | 1282 | 22452 |
S/G/Y/R/B/O |
NT_008055 | AC013509 | 77470168 | 3 |   |   | AC011716 | 77502830 | | 33816 | 0 | 0 | 33816 |
S/G/Y/R/B/O |
NT_008055 | AC134776 | 77502830 | 1 | chr8 | NT_008055 | AC079993 | 77545799 | 1 | 28220 | 3404 | 21102 | 52726 |
S/G/Y/R/B/O |
NT_008055 | AC134776 | 77502830 | 1 |   |   | AC011716 | 77502830 | | 96839 | 1549 | 1282 | 99670 |
S/G/Y/R/B/O |
NT_008055 | AC134776 | 77502830 | 1 |   |   | AC011716 | 77502830 | | 96839 | 1549 | 1282 | 99670 |
S/G/Y/R/B/O |
NT_008055 | AC079993 | 77545799 | 1 | chr8 | NT_008055 | AC087110 | 77612796 | 3 | 91211 | 2950 | 7800 | 101961 |
S/G/Y/R/B/O |
NT_008055 | AC079993 | 77545799 | 1 | chr8 | NT_008055 | AC023200 | 77758340 | 3 | 25258 | 0 | 0 | 25258 |
S/G/Y/R/B/O |
NT_008055 | AC079993 | 77545799 | 1 |   |   | AC011716 | 77612796 | | 56110 | 3930 | 19662 | 79702 |
S/G/Y/R/B/O |
NT_008055 | AC079993 | 77545799 | 1 |   |   | AC090711 | 77612796 | | 71837 | 0 | 5370 | 77207 |
S/G/Y/R/B/O |
NT_008055 | AC079993 | 77545799 | 1 |   |   | AC129985 | 77612796 | | 71836 | 0 | 5370 | 77206 |
S/G/Y/R/B/O |
NT_008055 | AC087110 | 77612796 | 3 | chr8 | NT_008055 | AC023200 | 77758340 | 3 | 66570 | 0 | 0 | 66570 |
S/G/Y/R/B/O |
NT_008055 | AC087110 | 77612796 | 3 |   |   | AC011716 | 77502830 | | 25099 | 0 | 0 | 25099 |
S/G/Y/R/B/O |
NT_008055 | AC087110 | 77612796 | 3 |   |   | AC090711 | 77545799 | | 119682 | 0 | 0 | 119682 |
S/G/Y/R/B/O |
NT_008055 | AC087110 | 77612796 | 3 |   |   | AC129985 | 77545799 | | 119118 | 0 | 0 | 119118 |
S/G/Y/R/B/O |
NT_008055 | AC023200 | 77758340 | 3 | chr8 | NT_008055 | AC090810 | 77851278 | 3 | 0 | 891 | 0 | 891 |
S/G/Y/R/B/O |
NT_008055 | AC023200 | 77758340 | 3 | chr8 | NT_008055 | AC079993 | 77545799 | 1 | 25258 | 0 | 0 | 25258 |
S/G/Y/R/B/O |
NT_008055 | AC023200 | 77758340 | 3 |   |   | AC090711 | 77612796 | | 99917 | 0 | 0 | 99917 |
S/G/Y/R/B/O |
NT_008055 | AC023200 | 77758340 | 3 |   |   | AC129985 | 77851278 | | 99361 | 0 | 0 | 99361 |
S/G/Y/R/B/O |
NT_008055 | AC090810 | 77851278 | 3 | chr8 | NT_008055 | AC018995 | 78018974 | 3 | 10493 | 0 | 0 | 10493 |
S/G/Y/R/B/O |
NT_008055 | AC090810 | 77851278 | 3 |   |   | AC067832 | 77758340 | | 20082 | 0 | 0 | 20082 |
S/G/Y/R/B/O |
NT_008055 | AC018995 | 78018974 | 3 | chr8 | NT_008055 | AC105242 | 78169945 | 3 | 52723 | 0 | 0 | 52723 |
S/G/Y/R/B/O |
NT_008055 | AC018995 | 78018974 | 3 |   |   | AC067832 | 77758340 | | 107710 | 0 | 0 | 107710 |
S/G/Y/R/B/O |
NT_008055 | AC105242 | 78169945 | 3 | chr8 | NT_008055 | AC127517 | 78230042 | 3 | 28726 | 0 | 0 | 28726 |
S/G/Y/R/B/O |
NT_008055 | AC127517 | 78230042 | 3 |   |   |   |   |   |   |   |   |   |
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