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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_023744 | AF067845 | 1334861 | 3 | chr8 | NT_023744 | AC005010 | 1443793 | 3 | 0 | 0 | 310 | 310 |
S/G/Y/R/B/O |
NT_023744 | AF067845 | 1334861 | 3 | chr8 | NT_037694 | AC110288 | 1222109 | 3 | 15267 | 0 | 0 | 15267 |
S/G/Y/R/B/O |
NT_023744 | AF067845 | 1334861 | 3 | chr8 | NT_037695 | AC131901 | 3068443 | 3 | 19212 | 0 | 0 | 19212 |
S/G/Y/R/B/O |
NT_023744 | AC005010 | 1443793 | 3 | chr8 | NT_023744 | AC126333 | 1640981 | 3 | 4845 | 0 | 0 | 4845 |
S/G/Y/R/B/O |
NT_023744 | AC005010 | 1443793 | 3 | chr8 | NT_037695 | AC131901 | 3068443 | 3 | 14271 | 0 | 0 | 14271 |
S/G/Y/R/B/O |
NT_023744 | AC005010 | 1443793 | 3 |   |   | AC090202 | 3068443 | | 39906 | 0 | 0 | 39906 |
S/G/Y/R/B/O |
NT_023744 | AC005010 | 1443793 | 3 |   |   | AF181898 | 1334861 | | 158134 | 0 | 0 | 158134 |
S/G/Y/R/B/O |
NT_023744 | AC126333 | 1640981 | 3 | chr8 | NT_023744 | AC100810 | 1756062 | 2 | 7433 | 0 | 0 | 7433 |
S/G/Y/R/B/O |
NT_023744 | AC126333 | 1640981 | 3 |   |   | AC090202 | 1443793 | | 41182 | 0 | 0 | 41182 |
S/G/Y/R/B/O |
NT_023744 | AC126333 | 1640981 | 3 |   |   | AC090202 | 1443793 | | 41182 | 0 | 0 | 41182 |
S/G/Y/R/B/O |
NT_023744 | AC126333 | 1640981 | 3 |   |   | AC090278 | 1443793 | | 87976 | 2103 | 22754 | 112833 |
S/G/Y/R/B/O |
NT_023744 | AC126333 | 1640981 | 3 |   |   | AC090278 | 1443793 | | 87976 | 2103 | 22754 | 112833 |
S/G/Y/R/B/O |
NT_023744 | AC126333 | 1640981 | 3 |   |   | AF181898 | 75843562 | | 102003 | 0 | 0 | 102003 |
S/G/Y/R/B/O |
NT_023744 | AC126333 | 1640981 | 3 |   |   | AF181898 | 75843562 | | 102003 | 0 | 0 | 102003 |
S/G/Y/R/B/O |
NT_023744 | AC126333 | 1640981 | 3 |   |   | AF188030 | 75843562 | | 114620 | 0 | 0 | 114620 |
S/G/Y/R/B/O |
NT_023744 | AC126333 | 1640981 | 3 |   |   | AF188030 | 75843562 | | 114620 | 0 | 0 | 114620 |
S/G/Y/R/B/O |
NT_023744 | AC126333 | 1640981 | 3 |   |   | AF214636 | 75843562 | | 34104 | 0 | 0 | 34104 |
S/G/Y/R/B/O |
NT_023744 | AC126333 | 1640981 | 3 |   |   | AF214636 | 75843562 | | 34104 | 0 | 0 | 34104 |
S/G/Y/R/B/O |
NT_023744 | AC100810 | 1756062 | 2 | chr8 | NT_023744 | AC133633 | 1817647 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023744 | AC100810 | 1756062 | 2 | chr8 | NT_023744 | AC129173 | 2214695 | 2 | 13589 | 2684 | 2779 | 19052 |
S/G/Y/R/B/O |
NT_023744 | AC100810 | 1756062 | 2 | chr8 | NT_023744 | AC129173 | 2214695 | 2 | 13589 | 2684 | 2779 | 19052 |
S/G/Y/R/B/O |
NT_023744 | AC100810 | 1756062 | 2 |   |   | AC090278 | 75843562 | | 33621 | 2233 | 5312 | 41166 |
S/G/Y/R/B/O |
NT_023744 | AC100810 | 1756062 | 2 |   |   | AC090278 | 75843562 | | 33621 | 2233 | 5312 | 41166 |
S/G/Y/R/B/O |
NT_023744 | AC100810 | 1756062 | 2 |   |   | AC093200 | 75843562 | | 113521 | 0 | 0 | 113521 |
S/G/Y/R/B/O |
NT_023744 | AC100810 | 1756062 | 2 |   |   | AC093200 | 75843562 | | 113521 | 0 | 0 | 113521 |
S/G/Y/R/B/O |
NT_023744 | AC100810 | 1756062 | 2 |   |   | AF188030 | 2214695 | | 42626 | 0 | 0 | 42626 |
S/G/Y/R/B/O |
NT_023744 | AC100810 | 1756062 | 2 |   |   | AF188030 | 2214695 | | 42626 | 0 | 0 | 42626 |
S/G/Y/R/B/O |
NT_023744 | AC100810 | 1756062 | 2 |   |   | AF214636 | 2214695 | | 66669 | 0 | 1704 | 68373 |
S/G/Y/R/B/O |
NT_023744 | AC100810 | 1756062 | 2 |   |   | AF214636 | 2214695 | | 66669 | 0 | 1704 | 68373 |
S/G/Y/R/B/O |
NT_023744 | AC133633 | 1817647 | 1 | chr8 | NT_023744 | AC090141 | 1834541 | 1 | 65445 | 0 | 11721 | 77166 |
S/G/Y/R/B/O |
NT_023744 | AC133633 | 1817647 | 1 | chr8 | NT_023744 | AC104021 | 2519530 | 3 | 21503 | 0 | 0 | 21503 |
S/G/Y/R/B/O |
NT_023744 | AC133633 | 1817647 | 1 | chr8 | NT_023744 | AC104021 | 2519530 | 3 | 21503 | 0 | 0 | 21503 |
S/G/Y/R/B/O |
NT_023744 | AC133633 | 1817647 | 1 |   |   | AC020548 | 2214695 | | 24288 | 3889 | 37453 | 65630 |
S/G/Y/R/B/O |
NT_023744 | AC133633 | 1817647 | 1 |   |   | AC020548 | 2214695 | | 24288 | 3889 | 37453 | 65630 |
S/G/Y/R/B/O |
NT_023744 | AC133633 | 1817647 | 1 |   |   | AC021013 | 2214695 | | 75516 | 4727 | 61760 | 142003 |
S/G/Y/R/B/O |
NT_023744 | AC133633 | 1817647 | 1 |   |   | AC021013 | 2214695 | | 75516 | 4727 | 61760 | 142003 |
S/G/Y/R/B/O |
NT_023744 | AC133633 | 1817647 | 1 |   |   | AC116378 | 2519530 | | 22387 | 0 | 47438 | 69825 |
S/G/Y/R/B/O |
NT_023744 | AC133633 | 1817647 | 1 |   |   | AC116378 | 2519530 | | 22387 | 0 | 47438 | 69825 |
S/G/Y/R/B/O |
NT_023744 | AC090141 | 1834541 | 1 | chr8 | NT_023744 | AC022257 | 1887784 | 2 | 28735 | 0 | 0 | 28735 |
S/G/Y/R/B/O |
NT_023744 | AC090141 | 1834541 | 1 |   |   | AC020548 | 76897339 | | 37510 | 3902 | 8804 | 50216 |
S/G/Y/R/B/O |
NT_023744 | AC090141 | 1834541 | 1 |   |   | AC021013 | 76897339 | | 45711 | 1981 | 84 | 47776 |
S/G/Y/R/B/O |
NT_023744 | AC090141 | 1834541 | 1 |   |   | AC116378 | 1887784 | | 28541 | 0 | 0 | 28541 |
S/G/Y/R/B/O |
NT_023744 | AC022257 | 1887784 | 2 | chr8 | NT_023744 | AC125453 | 2034497 | 3 | 0 | 0 | 27631 | 27631 |
S/G/Y/R/B/O |
NT_023744 | AC022257 | 1887784 | 2 |   |   | AC013550 | 1817647 | | 30779 | 2546 | 0 | 33325 |
S/G/Y/R/B/O |
NT_023744 | AC022257 | 1887784 | 2 |   |   | AC013550 | 1817647 | | 30779 | 2546 | 0 | 33325 |
S/G/Y/R/B/O |
NT_023744 | AC022257 | 1887784 | 2 |   |   | AC020548 | 1817647 | | 26496 | 2329 | 14706 | 43531 |
S/G/Y/R/B/O |
NT_023744 | AC022257 | 1887784 | 2 |   |   | AC020548 | 1817647 | | 26496 | 2329 | 14706 | 43531 |
S/G/Y/R/B/O |
NT_023744 | AC022257 | 1887784 | 2 |   |   | AC021013 | 1817647 | | 50643 | 0 | 13277 | 63920 |
S/G/Y/R/B/O |
NT_023744 | AC022257 | 1887784 | 2 |   |   | AC021013 | 1817647 | | 50643 | 0 | 13277 | 63920 |
S/G/Y/R/B/O |
NT_023744 | AC022257 | 1887784 | 2 |   |   | AC090189 | 1834541 | | 21059 | 0 | 5940 | 26999 |
S/G/Y/R/B/O |
NT_023744 | AC022257 | 1887784 | 2 |   |   | AC090189 | 1834541 | | 21059 | 0 | 5940 | 26999 |
S/G/Y/R/B/O |
NT_023744 | AC022257 | 1887784 | 2 |   |   | AF239614 | 1817647 | | 17159 | 0 | 9092 | 26251 |
S/G/Y/R/B/O |
NT_023744 | AC022257 | 1887784 | 2 |   |   | AF239614 | 1817647 | | 17159 | 0 | 9092 | 26251 |
S/G/Y/R/B/O |
NT_023744 | AC125453 | 2034497 | 3 | chr8 | NT_023744 | AC129173 | 2214695 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023744 | AC125453 | 2034497 | 3 |   |   | AC013550 | 1817647 | | 137225 | 2546 | 10027 | 149798 |
S/G/Y/R/B/O |
NT_023744 | AC125453 | 2034497 | 3 |   |   | AC090189 | 1887784 | | 106619 | 0 | 18379 | 124998 |
S/G/Y/R/B/O |
NT_023744 | AC125453 | 2034497 | 3 |   |   | AF170801 | 1887784 | | 35158 | 0 | 0 | 35158 |
S/G/Y/R/B/O |
NT_023744 | AC125453 | 2034497 | 3 |   |   | AF170801 | 1887784 | | 35158 | 0 | 0 | 35158 |
S/G/Y/R/B/O |
NT_023744 | AC125453 | 2034497 | 3 |   |   | AF239614 | 1887784 | | 140725 | 0 | 9168 | 149893 |
S/G/Y/R/B/O |
NT_023744 | AC129173 | 2214695 | 2 | chr8 | NT_023744 | AC104021 | 2519530 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023744 | AC129173 | 2214695 | 2 | chr8 | NT_023744 | AC100810 | 1756062 | 2 | 13589 | 2684 | 2779 | 19052 |
S/G/Y/R/B/O |
NT_023744 | AC129173 | 2214695 | 2 | chr8 | NT_023744 | AC100810 | 1756062 | 2 | 13589 | 2684 | 2779 | 19052 |
S/G/Y/R/B/O |
NT_023744 | AC129173 | 2214695 | 2 |   |   | AC093200 | 1887784 | | 13601 | 2685 | 2818 | 19104 |
S/G/Y/R/B/O |
NT_023744 | AC129173 | 2214695 | 2 |   |   | AF236876 | 1756062 | | 99958 | 0 | 0 | 99958 |
S/G/Y/R/B/O |
NT_023744 | AC104021 | 2519530 | 3 | chr8 | NT_023744 | AC104419 | 2655528 | 3 | 71196 | 0 | 0 | 71196 |
S/G/Y/R/B/O |
NT_023744 | AC104021 | 2519530 | 3 | chr8 | NT_023744 | AC133633 | 1817647 | 1 | 21503 | 0 | 0 | 21503 |
S/G/Y/R/B/O |
NT_023744 | AC104021 | 2519530 | 3 | chr8 | NT_023744 | AC133633 | 1817647 | 1 | 21503 | 0 | 0 | 21503 |
S/G/Y/R/B/O |
NT_023744 | AC104021 | 2519530 | 3 |   |   | AC021013 | 1756062 | | 58326 | 0 | 1386 | 59712 |
S/G/Y/R/B/O |
NT_023744 | AC104021 | 2519530 | 3 |   |   | AC116378 | 2655528 | | 21501 | 0 | 0 | 21501 |
S/G/Y/R/B/O |
NT_023744 | AC104419 | 2655528 | 3 | chr8 | NT_023744 | AC115485 | 2721516 | 3 | 27516 | 0 | 0 | 27516 |
S/G/Y/R/B/O |
NT_023744 | AC104419 | 2655528 | 3 |   |   | AF215849 | 2721516 | | 23794 | 0 | 0 | 23794 |
S/G/Y/R/B/O |
NT_023744 | AC115485 | 2721516 | 3 | chr8 | NT_023744 | AC023296 | 2883792 | 3 | 22156 | 0 | 0 | 22156 |
S/G/Y/R/B/O |
NT_023744 | AC115485 | 2721516 | 3 |   |   | AC019274 | 2721516 | | 109138 | 0 | 0 | 109138 |
S/G/Y/R/B/O |
NT_023744 | AC115485 | 2721516 | 3 |   |   | AF215849 | 2655528 | | 159025 | 2728 | 6355 | 168108 |
S/G/Y/R/B/O |
NT_023744 | AC023296 | 2883792 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_023744 | AC023296 | 2883792 | 3 |   |   | AC019274 | 2655528 | | 99359 | 0 | 0 | 99359 |
S/G/Y/R/B/O |
NT_023744 | AC023296 | 2883792 | 3 |   |   | AC055749 | 2655528 | | 57806 | 0 | 63622 | 121428 |
S/G/Y/R/B/O |
NT_023744 | AC023296 | 2883792 | 3 |   |   | AC084131 | 2655528 | | 129200 | 0 | 0 | 129200 |
S/G/Y/R/B/O |
NT_023744 | AC023296 | 2883792 | 3 |   |   | AF215849 | 2721516 | | 19637 | 0 | 2411 | 22048 |
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