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  Chromosome 5 - Genetic Maps - Single Contig
 

Chromosome 5 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006431
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006431AC021525646889501        
S/G/Y/R/B/O NT_006431AC091862647217622        
S/G/Y/R/B/O NT_006431AC016561647717591        
S/G/Y/R/B/O NT_006431AC035143648006913        
S/G/Y/R/B/O NT_006431AC008854649277453GATA176H09  570.441 AC008854
S/G/Y/R/B/O NT_006431AC008898649917943        
S/G/Y/R/B/O NT_006431AC109465650772933        
S/G/Y/R/B/O NT_006431AC092354652291113        
S/G/Y/R/B/O NT_006431AC008896653235543        
S/G/Y/R/B/O NT_006431AC008847654064403        
S/G/Y/R/B/O NT_006431AC008868654845151        
S/G/Y/R/B/O NT_006431AC025776655414141        
S/G/Y/R/B/O NT_006431AC010341655499121        
S/G/Y/R/B/O NT_006431AC025477655609971        
S/G/Y/R/B/O NT_006431AC008373655698432        
S/G/Y/R/B/O NT_006431AC016636656512743        
S/G/Y/R/B/O NT_006431AC008836657068533        
S/G/Y/R/B/O NT_006431AC026746659266213AFMA247YH9570.60569.841AC026809, AC026746, AC026750, AC026809
S/G/Y/R/B/O NT_006431AC016645660141313        
S/G/Y/R/B/O NT_006431AC094086660208811        
S/G/Y/R/B/O NT_006431AC026809660308201        
S/G/Y/R/B/O NT_006431AC026434660411583        
S/G/Y/R/B/O NT_006431AC016599661405433        
S/G/Y/R/B/O NT_006431AC091836662643973GGAA9A12  569.231 AC008877, AC091836
S/G/Y/R/B/O NT_006431AC034242664254383        
S/G/Y/R/B/O NT_006431AC016637666624773AFM023TG5179.701710.021 AC008884, AC016637, AC026460, AC073543
S/G/Y/R/B/O NT_006431AC008917667166223        
S/G/Y/R/B/O NT_006431AC114982668396721        
S/G/Y/R/B/O NT_006431AC008859668620643        
S/G/Y/R/B/O NT_006431AC016623670573783AFM319YC1571.20570.441AC025776, AC016623, AC025776, AC073536
S/G/Y/R/B/O NT_006431AC016623671036183MFD300  570.441AC010341, AC025776, AC010341, AC010383, AC016623, AC025776, AC073536
S/G/Y/R/B/O NT_006431AC092360671545093        
S/G/Y/R/B/O NT_006431AC025455672852462        
S/G/Y/R/B/O NT_006431AC016616673033612        
S/G/Y/R/B/O NT_006431AC099505673484853        
S/G/Y/R/B/O NT_006431AC025186673910433        
S/G/Y/R/B/O NT_006431AC025176674845713        
S/G/Y/R/B/O NT_006431AC016620675895433        
S/G/Y/R/B/O NT_006431AC008560676764113        
S/G/Y/R/B/O NT_006431AC008958677720293        
S/G/Y/R/B/O NT_006431AC016643678717063        
S/G/Y/R/B/O NT_006431AC010359681665613AFM164ZC5570.00569.231AC016603, AC025442, AC008563, AC010359, AC016603, AC025442
S/G/Y/R/B/O NT_006431AC016603681685433        
S/G/Y/R/B/O NT_006431AC025442681835863        
S/G/Y/R/B/O NT_006431AC008772682685663        
S/G/Y/R/B/O NT_006431AC010630683112032        
S/G/Y/R/B/O NT_006431AC113378683479961        
S/G/Y/R/B/O NT_006431AC010345683747463        
S/G/Y/R/B/O NT_006431AC092353684767963        
S/G/Y/R/B/O NT_006431AC092373685939063        


  NT_006431 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006431AC113365686887223        
S/G/Y/R/B/O NT_006431AC092349687323423AFMA052TB9574.00573.351 AC092349
S/G/Y/R/B/O NT_006431AC092349688314163AFM312ZH5573.90573.351AC016634, AC008943, AC016633, AC016634, AC092349
S/G/Y/R/B/O NT_006431AC016634688328703        
S/G/Y/R/B/O NT_006431AC008872690357873AFM292VE1574.70574.071 AC008872
S/G/Y/R/B/O NT_006431AC034208690941073        
S/G/Y/R/B/O NT_006431AC008920691204433        
S/G/Y/R/B/O NT_006431AC044799692214111        
S/G/Y/R/B/O NT_006431AC063978692353381        
S/G/Y/R/B/O NT_006431AC008480692358831        
S/G/Y/R/B/O NT_006431AC026445692399983        
S/G/Y/R/B/O NT_006431AC010420694078893AFMA103ZB9575.30574.071AC010459, AC010420, AC010459
S/G/Y/R/B/O NT_006431AC010459694194482AFMB341ZC1574.00573.352AC008459, AC008459, AC010459
S/G/Y/R/B/O NT_006431AC018420694917491UT795  573.351 AC018420
S/G/Y/R/B/O NT_006431AC008965694967463        
S/G/Y/R/B/O NT_006431AC008911696828233AFMA115ZD9571.20570.441 AC022163
S/G/Y/R/B/O NT_006431AC099519696860913        
S/G/Y/R/B/O NT_006431AC099504697397203        
S/G/Y/R/B/O NT_006431AC008558698987813AFM238XA3  569.231AC099504, AC016646, AC099504
S/G/Y/R/B/O NT_006431AC008558698987813AFM238XA3569.60  1AC099504, AC016646, AC099504
S/G/Y/R/B/O NT_006431AC113166700194633        
S/G/Y/R/B/O NT_006431AC025445701922233        
S/G/Y/R/B/O NT_006431AC113420703768583        
S/G/Y/R/B/O NT_006431AC092331704821431        
S/G/Y/R/B/O NT_006431AC116364706442961        
S/G/Y/R/B/O NT_006431AC069163706920781        
S/G/Y/R/B/O NT_006431AC008459707465322AFMB341ZC1574.00573.352AC010459, AC008459, AC010459
S/G/Y/R/B/O NT_006431AC110010708749301        
S/G/Y/R/B/O NT_006431AC112206710744513AFMB320WH1575.30574.681AC106798, AC106798, AC112206
S/G/Y/R/B/O NT_006431AC106798711295233        
S/G/Y/R/B/O NT_006431AC024581713585043AFMB336YD5575.30574.681 AC024581
S/G/Y/R/B/O NT_006431AC010376713769293        
S/G/Y/R/B/O NT_006431AC104120715192323        
S/G/Y/R/B/O NT_006431AC016564716360523        
S/G/Y/R/B/O NT_006431AC024579717242553        
S/G/Y/R/B/O NT_006431AC010280719230633AFMB281YB9576.50575.891 AC017093
S/G/Y/R/B/O NT_006431AC020941720637293AFMA154ZE5576.60575.891AC022136, AC022136
S/G/Y/R/B/O NT_006431AC024567721263173        
S/G/Y/R/B/O NT_006431AC010236722133513        
S/G/Y/R/B/O NT_006431AC093523722617002        
S/G/Y/R/B/O NT_006431AC093226723805821        
S/G/Y/R/B/O NT_006431AC022136723868391        
S/G/Y/R/B/O NT_006431AC093248724375071AFM265WF5576.70575.891 AC093248
S/G/Y/R/B/O NT_006431 - AFMA312ZF5575.30  1 AC084147
S/G/Y/R/B/O NT_006431 - UT5091  570.440AC025176, AC025186, AC025176, AC025186, AC099516
S/G/Y/R/B/O NT_006431 - UT889  573.350  
S/G/Y/R/B/O NT_006431 - GATA141B10  575.890