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  Chromosome 5 - Genetic Maps - Single Contig
 

Chromosome 5 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006654
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006654AC099509997873361        
S/G/Y/R/B/O NT_006654AC116344998249981        
S/G/Y/R/B/O NT_006654AC108107998351981        
S/G/Y/R/B/O NT_006654AC012660998405681        
S/G/Y/R/B/O NT_006654AC008951998809032        
S/G/Y/R/B/O NT_006654AC026143999090431        
S/G/Y/R/B/O NT_006654AC0116701000391191AFM302YG55104.505105.291AC012660, AC011670, AC012660
S/G/Y/R/B/O NT_006654AC0116701000446511AFM288VA95104.505104.761AC026143, AC108107, AC011670, AC026143, AC108107
S/G/Y/R/B/O NT_006654AC1041251000538442        
S/G/Y/R/B/O NT_006654AC0209001001307413        
S/G/Y/R/B/O NT_006654AC0089061003145093        
S/G/Y/R/B/O NT_006654AC0091261003939043        
S/G/Y/R/B/O NT_006654AC0088501006120103GATA3H06  5105.292AC008865, AC008907, AC008908, AC008850, AC008865, AC008905, AC008907, AC008908
S/G/Y/R/B/O NT_006654AC0088651006148443        
S/G/Y/R/B/O NT_006654AC0088831008142393AFM203VA35105.205105.291 AC008883
S/G/Y/R/B/O NT_006654AC0741331008542173        
S/G/Y/R/B/O NT_006654AC1067481009162333        
S/G/Y/R/B/O NT_006654AC0235261010629911        
S/G/Y/R/B/O NT_006654AC1080881010699271        
S/G/Y/R/B/O NT_006654AC0932581010888053        
S/G/Y/R/B/O NT_006654AC1122031011958801        
S/G/Y/R/B/O NT_006654AC0266991013164112        
S/G/Y/R/B/O NT_006654AC1134011013195173        
S/G/Y/R/B/O NT_006654AC0087881014419311        
S/G/Y/R/B/O NT_006654AC0113611014734173        
S/G/Y/R/B/O NT_006654AC0105901016252053        
S/G/Y/R/B/O NT_006654AC0919871017519351GATA73F06  5112.521 AC091987
S/G/Y/R/B/O NT_006654AC0558081017799071        
S/G/Y/R/B/O NT_006654AC0126121017926112        
S/G/Y/R/B/O NT_006654AC0089701017935723        
S/G/Y/R/B/O NT_006654AC0126021018336623        
S/G/Y/R/B/O NT_006654AC0995201018939903        
S/G/Y/R/B/O NT_006654AC0267331020345083        
S/G/Y/R/B/O NT_006654AC0083901021618753AFM321YB55112.205112.521 AC008390
S/G/Y/R/B/O NT_006654AC0083901021742803AFM273YF15112.205111.971 AC008390
S/G/Y/R/B/O NT_006654AC0932551022389573        
S/G/Y/R/B/O NT_006654AC0919311022895713        
S/G/Y/R/B/O NT_006654AC0165661024645803AFM304ZB55112.205112.521 AC015527, AC016566
S/G/Y/R/B/O NT_006654AC0919661026106833        
S/G/Y/R/B/O NT_006654AC0918941026621713        
S/G/Y/R/B/O NT_006654AC0105881028081803        
S/G/Y/R/B/O NT_006654AC0085051029369413AFM268VB15111.605111.971AC010588, AC010588
S/G/Y/R/B/O NT_006654AC0087751029983103        
S/G/Y/R/B/O NT_006654AC0085191030682273        
S/G/Y/R/B/O NT_006654AC0104231032627603        
S/G/Y/R/B/O NT_006654AC0104061034084603AFM184YB65109.305109.631AC010423, AC010406, AC010423
S/G/Y/R/B/O NT_006654AC0113621035495033AFM022TE35109.305109.631 AC008930
S/G/Y/R/B/O NT_006654AC0084471036216463        
S/G/Y/R/B/O NT_006654AC0102501037176363        
S/G/Y/R/B/O NT_006654AC1133731038065603        


  NT_006654 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006654AC0087791038792983        
S/G/Y/R/B/O NT_006654AC0085011039525683        
S/G/Y/R/B/O NT_006654AC0994871041042663        
S/G/Y/R/B/O NT_006654AC1121861042325303        
S/G/Y/R/B/O NT_006654AC0941081042732203        
S/G/Y/R/B/O NT_006654AC1134171043992451        
S/G/Y/R/B/O NT_006654AC0188951044065091        
S/G/Y/R/B/O NT_006654AC0342071044505393        
S/G/Y/R/B/O NT_006654AC0088711046144813        
S/G/Y/R/B/O NT_006654AC1094811046866003        
S/G/Y/R/B/O NT_006654AC0089551047035402        
S/G/Y/R/B/O NT_006654AC0447931047283771        
S/G/Y/R/B/O NT_006654AC0102281048099952        
S/G/Y/R/B/O NT_006654AC0114211048177573        
S/G/Y/R/B/O NT_006654AC1164281049658993        
S/G/Y/R/B/O NT_006654AC0342241050631662        
S/G/Y/R/B/O NT_006654AC0084671050830521        
S/G/Y/R/B/O NT_006654AC0106251051348542        
S/G/Y/R/B/O NT_006654AC0919171052705753        
S/G/Y/R/B/O NT_006654AC1142871053444561        
S/G/Y/R/B/O NT_006654AC0245721053639033        
S/G/Y/R/B/O NT_006654AC0126031054917233GATA49C05  5117.511AC008417, AC008417
S/G/Y/R/B/O NT_006654AC0084171055668803        
S/G/Y/R/B/O NT_006654AC0113661056734243        
S/G/Y/R/B/O NT_006654AC0922721058074323        
S/G/Y/R/B/O NT_006654AC0919141059147143        
S/G/Y/R/B/O NT_006654AC0935381060121323        
S/G/Y/R/B/O NT_006654AC0103491062126323        
S/G/Y/R/B/O NT_006654AC0126221062637613        
S/G/Y/R/B/O NT_006654AC1142901063820371        
S/G/Y/R/B/O NT_006654AC1068161063872392        
S/G/Y/R/B/O NT_006654AC0273131064397413AFM205YB105112.805113.082AC106816, AC114958, AC027313, AC106816, AC114958
S/G/Y/R/B/O NT_006654AC1142851064752243        
S/G/Y/R/B/O NT_006654AC1149401065849231        
S/G/Y/R/B/O NT_006654AC0994931066461093        
S/G/Y/R/B/O NT_006654AC1142941067757371        
S/G/Y/R/B/O NT_006654AC0221031068296883        
S/G/Y/R/B/O NT_006654AC0264471069588632        
S/G/Y/R/B/O NT_006654AC0919831069674721        
S/G/Y/R/B/O NT_006654AC0084711069684593        
S/G/Y/R/B/O NT_006654AC0264461070314383        
S/G/Y/R/B/O NT_006654AC0085731071669373        
S/G/Y/R/B/O NT_006654AC0900711072350872        
S/G/Y/R/B/O NT_006654AC0102461072659131        
S/G/Y/R/B/O NT_006654AC0102771074323621        
S/G/Y/R/B/O NT_006654AC0085471075463533        
S/G/Y/R/B/O NT_006654AC0088401076603583        
S/G/Y/R/B/O NT_006654AC0088211077730013        
S/G/Y/R/B/O NT_006654AC0089241079312153        
S/G/Y/R/B/O NT_006654AC0211241079667461        


  NT_006654 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006654AC0210861079735963        
S/G/Y/R/B/O NT_006654AC1149321081106593        
S/G/Y/R/B/O NT_006654AC1133851082836173AFM234VC15107.805108.073AC022104, AC113405, AC021725, AC022104, AC027222, AC113381, AC113385, AC113405
S/G/Y/R/B/O NT_006654AC0922781082984832        
S/G/Y/R/B/O NT_006654AC1143241084062311        
S/G/Y/R/B/O NT_006654AC1041231085328073        
S/G/Y/R/B/O NT_006654AC0221041087252883AFM234VC15107.805108.073AC113385, AC113405, AC021725, AC022104, AC027222, AC113381, AC113385, AC113405
S/G/Y/R/B/O NT_006654AC1134051087964973        
S/G/Y/R/B/O NT_006654AC0086501089238983GATA68A03  5116.981 AC008650, AC018756, AC020918
S/G/Y/R/B/O NT_006654AC0087821090473543UT6886  15107.711 AC020918
S/G/Y/R/B/O NT_006654AC0087821091395513AFM220XG95116.305116.981AC010395, AC008782, AC010395, AC012610
S/G/Y/R/B/O NT_006654AC0103951091592953        
S/G/Y/R/B/O NT_006654AC0085721092306113        
S/G/Y/R/B/O NT_006654AC0104681093730023        
S/G/Y/R/B/O NT_006654AC0102751094915253        
S/G/Y/R/B/O NT_006654AC0114221096669213        
S/G/Y/R/B/O NT_006654AC0084081097497373        
S/G/Y/R/B/O NT_006654AC0089671097552093        
S/G/Y/R/B/O NT_006654AC0221081098969193AFMB352ZE15116.305116.981 AC026229
S/G/Y/R/B/O NT_006654AC1142971100331311AFMB304XB55118.905119.501 AC114297
S/G/Y/R/B/O NT_006654AC1068071101680843UT975  5111.971 AC022999, AC106807
S/G/Y/R/B/O NT_006654AC0085291103019703AFM358TB55114.705114.751 AC008529
S/G/Y/R/B/O NT_006654AC0089521103477073        
S/G/Y/R/B/O NT_006654AC0088931104733893        
S/G/Y/R/B/O NT_006654AC0102271105330163        
S/G/Y/R/B/O NT_006654AC0113491105607653        
S/G/Y/R/B/O NT_006654AC0087961105889993        
S/G/Y/R/B/O NT_006654AC0088001106541963AFM164ZG55114.705114.751AC008823, AC024587, AC008823, AC019347, AC024587, AL355383
S/G/Y/R/B/O NT_006654AC0245871106823323        
S/G/Y/R/B/O NT_006654AC0085861108088343        
S/G/Y/R/B/O NT_006654AC0114191108777852        
S/G/Y/R/B/O NT_006654AC0319941109125681        
S/G/Y/R/B/O NT_006654AC0086731109157362        
S/G/Y/R/B/O NT_006654AC0221091109181392        
S/G/Y/R/B/O NT_006654AC0254501109332813        
S/G/Y/R/B/O NT_006654AC0251821110605903        
S/G/Y/R/B/O NT_006654AC0104951111528693        
S/G/Y/R/B/O NT_006654AC0102611111945073        
S/G/Y/R/B/O NT_006654AC1041261113054283        
S/G/Y/R/B/O NT_006654AC0102651114459683        
S/G/Y/R/B/O NT_006654AC0166171115575743AFMA143XE55118.905119.501 AC008564, AC016617
S/G/Y/R/B/O NT_006654AC1133531116365783        
S/G/Y/R/B/O NT_006654AC0221421116610983        
S/G/Y/R/B/O NT_006654AC0165671118341473        
S/G/Y/R/B/O NT_006654AC0085221118879203        
S/G/Y/R/B/O NT_006654AC0221211120138293GATA61B11  5108.071 AC008531, AC022121, AC034212
S/G/Y/R/B/O NT_006654AC0221211120473543AFM344TF95107.805108.071 AC012624, AC022121
S/G/Y/R/B/O NT_006654AC0267781121784863        
S/G/Y/R/B/O NT_006654AC0089611122145281        
S/G/Y/R/B/O NT_006654AC0085611122476293        


  NT_006654 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006654AC0104111123001363        
S/G/Y/R/B/O NT_006654AC0088561123412643        
S/G/Y/R/B/O NT_006654AC0847131124954931        
S/G/Y/R/B/O NT_006654AC0164091125026441        
S/G/Y/R/B/O NT_006654AC0273151125421593        
S/G/Y/R/B/O NT_006654AC0088231127742051GATA165C03  189.492AL603765, AC008823, AC021913, AL603765
S/G/Y/R/B/O NT_006654AC1133581130192671        
S/G/Y/R/B/O NT_006654AC1163581131022051        
S/G/Y/R/B/O NT_006654AC0516361131071481        
S/G/Y/R/B/O NT_006654AC1163111131788943        
S/G/Y/R/B/O NT_006654AC1133771133027991        
S/G/Y/R/B/O NT_006654AC0213811133223861        
S/G/Y/R/B/O NT_006654AC1133951136050631UT2419  5105.291AC024627, AC034230, AC024627, AC034230, AC113395
S/G/Y/R/B/O NT_006654AC0342301134643241        
S/G/Y/R/B/O NT_006654AC0246271134777411        
S/G/Y/R/B/O NT_006654AC0228531134909191        
S/G/Y/R/B/O NT_006654AC0254611135794582        
S/G/Y/R/B/O NT_006654AC0246331135887001        
S/G/Y/R/B/O NT_006654AC0841841136585221        
S/G/Y/R/B/O NT_006654AC1134161137081161        
S/G/Y/R/B/O NT_006654AC1094891138095982        
S/G/Y/R/B/O NT_006654AC0190451139860091        
S/G/Y/R/B/O NT_006654AC1067651139862673        
S/G/Y/R/B/O NT_006654AC0262801141494411        
S/G/Y/R/B/O NT_006654AC0089481141528753        
S/G/Y/R/B/O NT_006654AC0995151143295313        
S/G/Y/R/B/O NT_006654AC0255651144289261        
S/G/Y/R/B/O NT_006654 - GATA48A11  5108.071AC113384, AC113384, AC114306
S/G/Y/R/B/O NT_006654 - UT679  5109.630  
S/G/Y/R/B/O NT_006654 - AFM072ZF75112.205112.521AC008861, AC106797, AC008861, AC106797
S/G/Y/R/B/O NT_006654 - ATA4F06  5114.751AC092596, AC092596