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Chromosome 5 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_016779
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_016779AC016618135496841        
S/G/Y/R/B/O NT_016779AC020979136094063        
S/G/Y/R/B/O NT_016779AC016553137153003UT1347  524.481 AC004225, AC016553, AC022090
S/G/Y/R/B/O NT_016779AC016553137399423MFD317  524.481 AC016553, AC022090
S/G/Y/R/B/O NT_016779AC109461138034123        
S/G/Y/R/B/O NT_016779AC016657138590853        
S/G/Y/R/B/O NT_016779AC010450140429413AFM347TA5522.60524.481 AC006406
S/G/Y/R/B/O NT_016779AC010364140695003        
S/G/Y/R/B/O NT_016779AC016546141872043        
S/G/Y/R/B/O NT_016779AC026811142911973        
S/G/Y/R/B/O NT_016779AC016576144365013        
S/G/Y/R/B/O NT_016779AC034251145607423        
S/G/Y/R/B/O NT_016779AC010419147043693        
S/G/Y/R/B/O NT_016779AC026456147970453        
S/G/Y/R/B/O NT_016779AC020778148459261        
S/G/Y/R/B/O NT_016779AC016549148564582        
S/G/Y/R/B/O NT_016779AC024574149025702        
S/G/Y/R/B/O NT_016779AC010413149043761        
S/G/Y/R/B/O NT_016779AC092133149707761        
S/G/Y/R/B/O NT_016779AC016654149777703        
S/G/Y/R/B/O NT_016779AC016652150049043        
S/G/Y/R/B/O NT_016779AC026749151706113        
S/G/Y/R/B/O NT_016779AC010491153013933        
S/G/Y/R/B/O NT_016779AC025456153223463        
S/G/Y/R/B/O NT_016779AC016575154493903AFMA282WA5525.90526.731 AC016575, AL591609
S/G/Y/R/B/O NT_016779AC016651156286393        
S/G/Y/R/B/O NT_016779AC016648157131773        
S/G/Y/R/B/O NT_016779AC020982158352093        
S/G/Y/R/B/O NT_016779AC113406159514141        
S/G/Y/R/B/O NT_016779AC114964159525321        
S/G/Y/R/B/O NT_016779AC016881159661451        
S/G/Y/R/B/O NT_016779AC010477159725033        
S/G/Y/R/B/O NT_016779AC010638161992213AFMA247WC1527.30528.221 AC010638
S/G/Y/R/B/O NT_016779AC091970161997033        
S/G/Y/R/B/O NT_016779AC027332163914423AFMA114XF9527.40528.221 AC027332
S/G/Y/R/B/O NT_016779AC091872164866853        
S/G/Y/R/B/O NT_016779AC018762165226473        
S/G/Y/R/B/O NT_016779AC026807166126723AFMA285ZD1527.90528.761AC016650, AC016650, AC026807
S/G/Y/R/B/O NT_016779AC016650166220003        
S/G/Y/R/B/O NT_016779AC092335167894443        
S/G/Y/R/B/O NT_016779AC022102168781502        
S/G/Y/R/B/O NT_016779AC020980168831831        
S/G/Y/R/B/O NT_016779AC013658168907101        
S/G/Y/R/B/O NT_016779AC018409169780271        
S/G/Y/R/B/O NT_016779AC016621170047411        
S/G/Y/R/B/O NT_016779AC022113170325401        
S/G/Y/R/B/O NT_016779AC024588172259153AFMA140VD1527.90528.761 AC024588
S/G/Y/R/B/O NT_016779AC024588173147633AFM205WH10527.90528.761AC010310, AC010358, AC010473, AC010310, AC010358, AC010473, AC024588
S/G/Y/R/B/O NT_016779AC010473173171933        
S/G/Y/R/B/O NT_016779AC010358173537883        


  NT_016779 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_016779AC010310174904733AFMA090YH5528.70529.521 AC010310
S/G/Y/R/B/O NT_016779AC010607175771293AFMA302WC9529.70530.511 AC010607
S/G/Y/R/B/O NT_016779AC108111175843782        
S/G/Y/R/B/O NT_016779AC026790177663453AFM206ZC1531.00531.781AC091878, AC026790, AC091878
S/G/Y/R/B/O NT_016779AC091878177889353        
S/G/Y/R/B/O NT_016779AC026785179340843UT5234  533.041AC026504, AC026504, AC026785
S/G/Y/R/B/O NT_016779AC026504179753771        
S/G/Y/R/B/O NT_016779AC106774180149201D5S268  533.041 AC041048, AC106774
S/G/Y/R/B/O NT_016779AC106774180421061AFM105XG1531.90533.041AC068100, AC041048, AC068100, AC106774
S/G/Y/R/B/O NT_016779AC068100181198191