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  Chromosome 5 - Genetic Maps - Single Contig
 

Chromosome 5 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006859
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006859AC0448711445980951        
S/G/Y/R/B/O NT_006859AC0113801446115091        
S/G/Y/R/B/O NT_006859AC1163531446148411        
S/G/Y/R/B/O NT_006859AC0053691446467063        
S/G/Y/R/B/O NT_006859AC0056091447210773        
S/G/Y/R/B/O NT_006859AC0084681448770103        
S/G/Y/R/B/O NT_006859AC0102231449782133AFM308ZA95142.605142.921AC044871, AC004776, AC008688, AC010223, AC025436, AC044871
S/G/Y/R/B/O NT_006859AC0057541450524273GTAT1B03  5142.921 AC008688
S/G/Y/R/B/O NT_006859AC0741301451637163        
S/G/Y/R/B/O NT_006859AC0057521451746843        
S/G/Y/R/B/O NT_006859AC0056181454138853AFMA103WC95143.705144.061 AC005618, AC008579, AC008890
S/G/Y/R/B/O NT_006859AC0087811454500973        
S/G/Y/R/B/O NT_006859AC0221341456360912        
S/G/Y/R/B/O NT_006859AC0113321456894042        
S/G/Y/R/B/O NT_006859AC0053521458210603        
S/G/Y/R/B/O NT_006859AC0053531459175533AFM292ZE95135.105133.651AC005352, AC005352, AC005353
S/G/Y/R/B/O NT_006859AC0686581459572993UT2042  5137.751AC005353, AC005353, AC068658
S/G/Y/R/B/O NT_006859AC1134091460640241        
S/G/Y/R/B/O NT_006859AC0224201461666352AFM203YE75143.705144.061AC008439, AC010484, AC008439, AC010484, AC022420
S/G/Y/R/B/O NT_006859AC0084391461065061        
S/G/Y/R/B/O NT_006859AC0104841461718462        
S/G/Y/R/B/O NT_006859AC0113991463053471AFMA102ZF15142.505142.921 AC011399
S/G/Y/R/B/O NT_006859AC0084381463765502        
S/G/Y/R/B/O NT_006859AC0046341464748343        
S/G/Y/R/B/O NT_006859AC0113791465991772        
S/G/Y/R/B/O NT_006859AC0055751466339543        
S/G/Y/R/B/O NT_006859AC0262721466826991        
S/G/Y/R/B/O NT_006859AC0940801466857643        
S/G/Y/R/B/O NT_006859AC0102921467834423        
S/G/Y/R/B/O NT_006859AC0085231468160393        
S/G/Y/R/B/O NT_006859AC0086671470927881AFMB021ZC15143.705142.921 AC044881
S/G/Y/R/B/O NT_006859AC0262911471032531        
S/G/Y/R/B/O NT_006859AC1133611471045692        
S/G/Y/R/B/O NT_006859AC0057531471935773AFMA217XD15143.705144.061AC008439, AC010484, AC005753, AC008439, AC010484
S/G/Y/R/B/O NT_006859AC0057531472909503AFMB026XG95143.705144.061AC094107, AC005753, AC094107
S/G/Y/R/B/O NT_006859AC0941071472989673        
S/G/Y/R/B/O NT_006859AC0057401473932103        
S/G/Y/R/B/O NT_006859AC0103781475612143        
S/G/Y/R/B/O NT_006859AC0918251476966111        
S/G/Y/R/B/O NT_006859AC0114011477606192        
S/G/Y/R/B/O NT_006859AC0069581477762843        
S/G/Y/R/B/O NT_006859AC0047521478529733        
S/G/Y/R/B/O NT_006859AC0221181480671843        
S/G/Y/R/B/O NT_006859AC0104241482786733AFM214YG15132.805133.651 AC005611, AC008398
S/G/Y/R/B/O NT_006859AC0086821482843483        
S/G/Y/R/B/O NT_006859AC0084021484919823        
S/G/Y/R/B/O NT_006859AC0114161485015623        
S/G/Y/R/B/O NT_006859AC0059151485884823        
S/G/Y/R/B/O NT_006859AC0045071487383023        
S/G/Y/R/B/O NT_006859AC0052211487566023        


  NT_006859 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006859AC0935321488128263        
S/G/Y/R/B/O NT_006859AC0932841489394623        
S/G/Y/R/B/O NT_006859AC0087171490614991ATA26G09  5147.491 AC008717
S/G/Y/R/B/O NT_006859AC0087151490921683        
S/G/Y/R/B/O NT_006859AC0087001492139053        
S/G/Y/R/B/O NT_006859AC0086311493478273FB18E2  5147.491 AC008631
S/G/Y/R/B/O NT_006859AC0114111494248603AFM287WE95146.405147.491 AC011411
S/G/Y/R/B/O NT_006859AC0113551495591702        
S/G/Y/R/B/O NT_006859AC0245071495715631        
S/G/Y/R/B/O NT_006859AC0113591496890743AFM263WG55147.205147.491AC024507, AC024507
S/G/Y/R/B/O NT_006859AC0113591498177703AFMA060TH55148.905148.631 AC011359
S/G/Y/R/B/O NT_006859AC0053511498528213        
S/G/Y/R/B/O NT_006859AC0052161498695783        
S/G/Y/R/B/O NT_006859AC0918871499805892        
S/G/Y/R/B/O NT_006859AC0275261499853021        
S/G/Y/R/B/O NT_006859AC0919591500515462        
S/G/Y/R/B/O NT_006859AC0113561501400913        
S/G/Y/R/B/O NT_006859AC0113961502023333        
S/G/Y/R/B/O NT_006859AC0113751502824603        
S/G/Y/R/B/O NT_006859AC0087281504462933AFMB318XC55148.305148.631 AC008728
S/G/Y/R/B/O NT_006859AC0091861505417222        
S/G/Y/R/B/O NT_006859AC0113571505663223        
S/G/Y/R/B/O NT_006859AC0113861507048553        
S/G/Y/R/B/O NT_006859AC0919191508202282AFM282WD55146.605148.631AC022527, AC022527, AC091919
S/G/Y/R/B/O NT_006859AC0919241508665172        
S/G/Y/R/B/O NT_006859AC0225271509071891        
S/G/Y/R/B/O NT_006859AC0102511509315133        
S/G/Y/R/B/O NT_006859AC0113381511067043        
S/G/Y/R/B/O NT_006859AC0091891511529833        
S/G/Y/R/B/O NT_006859AC0113731512550483        
S/G/Y/R/B/O NT_006859AC0087011514392413        
S/G/Y/R/B/O NT_006859AC1149371514558971        
S/G/Y/R/B/O NT_006859AC0114021514635923GATA139B09  5149.481AC114937, AC011402, AC114937
S/G/Y/R/B/O NT_006859AC0114021514699403ATA24B04  5149.481AC114937, AC011402, AC114937
S/G/Y/R/B/O NT_006859AC0113701515310473        
S/G/Y/R/B/O NT_006859AC0114151516157033AFM112XD25148.805149.481 AC011415
S/G/Y/R/B/O NT_006859AC0113521517155732AFMA052TH55149.905150.341 AC011352
S/G/Y/R/B/O NT_006859AC0086151518003123AFM276WD55150.105150.341 AC008615, AC114479
S/G/Y/R/B/O NT_006859AC0065241518627773        
S/G/Y/R/B/O NT_006859AC0087221518982813        
S/G/Y/R/B/O NT_006859AC1163341520011351        
S/G/Y/R/B/O NT_006859AC0062921520024623        
S/G/Y/R/B/O NT_006859AC0113461520480123        
S/G/Y/R/B/O NT_006859AC0919481521531503        
S/G/Y/R/B/O NT_006859AC1149391522763641        
S/G/Y/R/B/O NT_006859AJ2432131522914403        
S/G/Y/R/B/O NT_006859AC0113901524112653        
S/G/Y/R/B/O NT_006859AC0919711524177972        
S/G/Y/R/B/O NT_006859AC0086271524353901        
S/G/Y/R/B/O NT_006859AC0113541525108163        


  NT_006859 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006859AC1163121527995363AFM198ZH65150.005150.341AC011364, AC011364, AC116312
S/G/Y/R/B/O NT_006859AC0113641528009223        
S/G/Y/R/B/O NT_006859AC0919401528939633        
S/G/Y/R/B/O NT_006859AC0126131530148433        
S/G/Y/R/B/O NT_006859AC0086811531769083        
S/G/Y/R/B/O NT_006859AC0210781532992113        
S/G/Y/R/B/O NT_006859AC1163601541625891GAAT1D8  5150.341 AC116360
S/G/Y/R/B/O NT_006859AC0113721534322391        
S/G/Y/R/B/O NT_006859AC0058951535937753AFMB035ZE15152.305152.621 AC005895
S/G/Y/R/B/O NT_006859AC0058951535987503AFMB040XA95152.805152.621 AC005895
S/G/Y/R/B/O NT_006859AC0113821536744913CSF1R  5152.621 AC011382
S/G/Y/R/B/O NT_006859AC0114061537448893        
S/G/Y/R/B/O NT_006859AC0084271538074293        
S/G/Y/R/B/O NT_006859AC0085451539379613        
S/G/Y/R/B/O NT_006859AC0221001540284541        
S/G/Y/R/B/O NT_006859AC0410471541717791        
S/G/Y/R/B/O NT_006859AC0103171542260793AFMB074XG15144.805145.211AC091825, AC091825
S/G/Y/R/B/O NT_006859AC0052151543761323        
S/G/Y/R/B/O NT_006859AC0053701544554903        
S/G/Y/R/B/O NT_006859AC0055921545316693        
S/G/Y/R/B/O NT_006859AC0085331548356133AFMA190XB15146.505146.731AC012630, AC008533, AC012630
S/G/Y/R/B/O NT_006859AC0126301548552812        
S/G/Y/R/B/O NT_006859AC0113711548712081        
S/G/Y/R/B/O NT_006859AC0053481548749583        
S/G/Y/R/B/O NT_006859AC0055741549590903        
S/G/Y/R/B/O NT_006859AC0047821549924233        
S/G/Y/R/B/O NT_006859AC0126341551737403        
S/G/Y/R/B/O NT_006859AC0919251552557132        
S/G/Y/R/B/O NT_006859AC0113881553369643        
S/G/Y/R/B/O NT_006859AC0084721554453613UT5140  12116.081 AC008472, AL080244
S/G/Y/R/B/O NT_006859AC0084721554677463AFM277VF55152.805153.171 AC008472, AL080244
S/G/Y/R/B/O NT_006859AC0113831555352743AFMB037WF55152.805153.171 AC011383
S/G/Y/R/B/O NT_006859AC0113831555536543AFM283WB55152.805152.621AC008453, AC008453
S/G/Y/R/B/O NT_006859AC0084531556082323AFM144ZH45152.805153.171 AC008453, AC022091
S/G/Y/R/B/O NT_006859AC0084501556717763        
S/G/Y/R/B/O NT_006859AC0086431556860693        
S/G/Y/R/B/O NT_006859AC0104411557898573        
S/G/Y/R/B/O NT_006859AC0221061558623643        
S/G/Y/R/B/O NT_006859AC0086661559639723        
S/G/Y/R/B/O NT_006859AC0086411560558253        
S/G/Y/R/B/O NT_006859AC0113421561335523        
S/G/Y/R/B/O NT_006859AC0083851562295603        
S/G/Y/R/B/O NT_006859AC0342051563102813        
S/G/Y/R/B/O NT_006859AC0113371564577343        
S/G/Y/R/B/O NT_006859AC0113741565136463        
S/G/Y/R/B/O NT_006859AC1099991566330193        
S/G/Y/R/B/O NT_006859AC0919821567767693        
S/G/Y/R/B/O NT_006859AC0103121568549333        
S/G/Y/R/B/O NT_006859AC0086641569065233AFM336XE95155.505155.921 AC008664, AC015702
S/G/Y/R/B/O NT_006859AC0103141570062073        


  NT_006859 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006859AC0106101570987533        
S/G/Y/R/B/O NT_006859AC0087041571773803AFM329TF55155.505155.922AC008678, AC079464, AC008678, AC008704, AC018759, AC079464
S/G/Y/R/B/O NT_006859 - UT771  5142.920AC008667, AC008667
S/G/Y/R/B/O NT_006859 - GATA149H04  5146.731AC025765, AC025765, AC025981, AC068563, AC113343
S/G/Y/R/B/O NT_006859 - AFM127XH45147.105147.491AC011341, AC011341
S/G/Y/R/B/O NT_006859 - GATA51H06  5147.491AC011353, AC011353
S/G/Y/R/B/O NT_006859 - MFD43  5147.491AC025765, AC025765, AC068563, AC113343
S/G/Y/R/B/O NT_006859 - MFD137A  5147.491AC008689, AC008689
S/G/Y/R/B/O NT_006859 - ATA23A10  5147.491AC005194, AC010290, AC011353, AC005194, AC010290, AC011353