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  Chromosome 5 - Genetic Maps - Single Contig
 

Chromosome 5 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_007072
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007072AC1068091333188871        
S/G/Y/R/B/O NT_007072AC0742561333370771        
S/G/Y/R/B/O NT_007072AC1067871334076263        
S/G/Y/R/B/O NT_007072AC0918181335141723        
S/G/Y/R/B/O NT_007072AC0922701335924943        
S/G/Y/R/B/O NT_007072AC1067461336772703        
S/G/Y/R/B/O NT_007072AC0052131338726483AFM196XC75141.30  1 AC005213
S/G/Y/R/B/O NT_007072AC0052131338726483AFM196XC7  5141.271 AC005213
S/G/Y/R/B/O NT_007072AC0051881338974253        
S/G/Y/R/B/O NT_007072AC0024481340121433        
S/G/Y/R/B/O NT_007072AC0024271341342653        
S/G/Y/R/B/O NT_007072AC1107211342149293AFM108XE35141.405140.721AC002427, AC002427, AC110721, AC114301
S/G/Y/R/B/O NT_007072AC1121781343336631        
S/G/Y/R/B/O NT_007072AC0085771343705793        
S/G/Y/R/B/O NT_007072AC0251691344482653        
S/G/Y/R/B/O NT_007072AC0342351346042513        
S/G/Y/R/B/O NT_007072AC1143041346782971        
S/G/Y/R/B/O NT_007072AC1133871347384301        
S/G/Y/R/B/O NT_007072AC1149351347468321        
S/G/Y/R/B/O NT_007072AC1142761347664843        
S/G/Y/R/B/O NT_007072AC0085881350366323AFM343XD15134.405134.721AC004038, AC004038, AC008437, AC008588, AC025753
S/G/Y/R/B/O NT_007072AC0085881350645263AFM286XG95134.405134.721AC004038, AC004038, AC008437, AC008588
S/G/Y/R/B/O NT_007072AC0040381350742543        
S/G/Y/R/B/O NT_007072AC0046361351228273        
S/G/Y/R/B/O NT_007072AC0069591352823443AFMA103ZA95134.905135.251 AC006959
S/G/Y/R/B/O NT_007072AC0086791353000661        
S/G/Y/R/B/O NT_007072AC0091751353239991        
S/G/Y/R/B/O NT_007072AC0262991353291091        
S/G/Y/R/B/O NT_007072AC1142961353422541        
S/G/Y/R/B/O NT_007072AC0251771353642321        
S/G/Y/R/B/O NT_007072AC0342531354136221        
S/G/Y/R/B/O NT_007072AC0230611354344732        
S/G/Y/R/B/O NT_007072AC0114091355025223        
S/G/Y/R/B/O NT_007072AC0046291355630583        
S/G/Y/R/B/O NT_007072AC0047481356765853        
S/G/Y/R/B/O NT_007072AC1133761357099763        
S/G/Y/R/B/O NT_007072AC0042201358999573        
S/G/Y/R/B/O NT_007072AC0639801359646943        
S/G/Y/R/B/O NT_007072AC0086611359951083AFM042XD125140.805140.721AC026299, AC063980, AC008661, AC026299, AC063980
S/G/Y/R/B/O NT_007072AC0090141361565703        
S/G/Y/R/B/O NT_007072AC0052191362304283        
S/G/Y/R/B/O NT_007072AC0045031363048303        
S/G/Y/R/B/O NT_007072AC0024281363948873GATA2H09  5139.331 AC002428
S/G/Y/R/B/O NT_007072AC0024281364410533UT819  5140.721 AC002428, AC004763
S/G/Y/R/B/O NT_007072AC0114271364704853        
S/G/Y/R/B/O NT_007072AC0062901365474273        
S/G/Y/R/B/O NT_007072AC0040431365968083        
S/G/Y/R/B/O NT_007072AC0056131366727753        
S/G/Y/R/B/O NT_007072AC0057411367349053        
S/G/Y/R/B/O NT_007072AC0042261368529413        


  NT_007072 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007072AC0051961369603513        
S/G/Y/R/B/O NT_007072AC0047691370280903        
S/G/Y/R/B/O NT_007072AC0039551370973343        
S/G/Y/R/B/O NT_007072AC0042191371277093        
S/G/Y/R/B/O NT_007072AC0053731371830393        
S/G/Y/R/B/O NT_007072AC0084261372821113        
S/G/Y/R/B/O NT_007072AC0113601374266703        
S/G/Y/R/B/O NT_007072AC0085911374732503        
S/G/Y/R/B/O NT_007072AC0085281376034953        
S/G/Y/R/B/O NT_007072AC0040371377308023MFD247  5133.651 AC004037
S/G/Y/R/B/O NT_007072AC0091911377495803        
S/G/Y/R/B/O NT_007072AC0090161377765263        
S/G/Y/R/B/O NT_007072AC0084971378555673        
S/G/Y/R/B/O NT_007072AC0046221379242583        
S/G/Y/R/B/O NT_007072AC0042271379968983AFMA082WG15134.905135.251 AC002210, AC004227
S/G/Y/R/B/O NT_007072AC0042271380082903AFMC003XE95134.905135.251 AC004227, AC026754
S/G/Y/R/B/O NT_007072AC0055761380186873        
S/G/Y/R/B/O NT_007072AC0086951380614563        
S/G/Y/R/B/O NT_007072AC0055931382042393        
S/G/Y/R/B/O NT_007072AC0263981382780873        
S/G/Y/R/B/O NT_007072AC0257721383603133        
S/G/Y/R/B/O NT_007072AC0342281383857413        
S/G/Y/R/B/O NT_007072AC0342161385538143        
S/G/Y/R/B/O NT_007072AC0639761386170243        
S/G/Y/R/B/O NT_007072AC0342201387341993AFMA231WB15135.005135.252AC004649, AC023861, AC004649, AC023861, AC034220, AC046165
S/G/Y/R/B/O NT_007072AC0085991387984303        
S/G/Y/R/B/O NT_007072AC0238611388428981        
S/G/Y/R/B/O NT_007072AB0166251388503373        
S/G/Y/R/B/O NT_007072AC0046281388707893        
S/G/Y/R/B/O NT_007072AC1163661388768421        
S/G/Y/R/B/O NT_007072AC0040421389998393        
S/G/Y/R/B/O NT_007072AC0040411390570253        
S/G/Y/R/B/O NT_007072AC0040391391319853        
S/G/Y/R/B/O NT_007072AC0042371391818743        
S/G/Y/R/B/O NT_007072AC0047751392203253        
S/G/Y/R/B/O NT_007072AC0045001393017243        
S/G/Y/R/B/O NT_007072AC0102401393791023        
S/G/Y/R/B/O NT_007072AC1134101410424421AFMA343ZG95136.105136.331 AC113410
S/G/Y/R/B/O NT_007072AC0741271394894701        
S/G/Y/R/B/O NT_007072AC0231711394959071        
S/G/Y/R/B/O NT_007072AC0086081395519603AFMA290WE55137.905137.951 AC008605, AC008608
S/G/Y/R/B/O NT_007072AC0113361397005313        
S/G/Y/R/B/O NT_007072AC0071991397290023        
S/G/Y/R/B/O NT_007072AC1041091398656383MFD213  5137.461AC020780, AC020780, AC104109
S/G/Y/R/B/O NT_007072AC1094541398909883        
S/G/Y/R/B/O NT_007072AC0046311400145543        
S/G/Y/R/B/O NT_007072AC0053551400303623        
S/G/Y/R/B/O NT_007072AC1067631408630791AFM042XF85138.705139.331AC010301, AC010301, AC106763
S/G/Y/R/B/O NT_007072AC0114331401112151        
S/G/Y/R/B/O NT_007072AC0162841401515061        


  NT_007072 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007072AC0051781402145373AFMB354ZC95137.205137.391AC023061, AC005178, AC023061
S/G/Y/R/B/O NT_007072AC0055711402942913AFMA102ZG15137.305137.391 AC005571
S/G/Y/R/B/O NT_007072AC0046321403400513        
S/G/Y/R/B/O NT_007072AC0051951403794733GATA51D11  5137.391 AC005195, AC025467
S/G/Y/R/B/O NT_007072AC0106081404155293        
S/G/Y/R/B/O NT_007072AC0126141405415603        
S/G/Y/R/B/O NT_007072AC0103071406701101        
S/G/Y/R/B/O NT_007072AC1133451407295781        
S/G/Y/R/B/O NT_007072AC0207801408027721        
S/G/Y/R/B/O NT_007072AC0103011409526963UT1442  5140.721 AC005372, AC010301
S/G/Y/R/B/O NT_007072AC0090081411953842        
S/G/Y/R/B/O NT_007072AC0057381412264293        
S/G/Y/R/B/O NT_007072AC0342061413609353        
S/G/Y/R/B/O NT_007072AC0090091414280963        
S/G/Y/R/B/O NT_007072AC0086701416025703AFMB355YC55137.805139.331AC004764, AC004764
S/G/Y/R/B/O NT_007072AC0047641416509503        
S/G/Y/R/B/O NT_007072AC0084061417001503AFM066XF115141.405139.331 AC027305
S/G/Y/R/B/O NT_007072AC0102381418289623        
S/G/Y/R/B/O NT_007072AC0266911420242403AFMA102WC55138.605138.641 AC026691
S/G/Y/R/B/O NT_007072AC0220921421847603ATA18C09  951.212AC022772, AL353783, AC022092, AC022772, AL353783
S/G/Y/R/B/O NT_007072AC0227721422356421        
S/G/Y/R/B/O NT_007072 - AFM292ZE95135.10  1AC005352, AC005353, AC005352, AC005353
S/G/Y/R/B/O NT_007072 - UT2042  5137.751AC005353, AC068658, AC005353, AC068658
S/G/Y/R/B/O NT_007072 - UT5106  5140.720