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  Chromosome 5 - Genetic Maps - Single Contig
 

Chromosome 5 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006576
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006576AC10677223935102        
S/G/Y/R/B/O NT_006576AC06080624213221        
S/G/Y/R/B/O NT_006576AC02674024259711        
S/G/Y/R/B/O NT_006576AC11342824277321        
S/G/Y/R/B/O NT_006576AC11336325134341        
S/G/Y/R/B/O NT_006576AC01044225360942        
S/G/Y/R/B/O NT_006576AC08409825474891        
S/G/Y/R/B/O NT_006576AC06078926839871        
S/G/Y/R/B/O NT_006576AC061974104455741AFM028XB1250.0050.001AC060789, AC061972, AC084098, AC060789, AC061972, AC061974, AC084098
S/G/Y/R/B/O NT_006576AC06197227080381        
S/G/Y/R/B/O NT_006576AC11429127111641        
S/G/Y/R/B/O NT_006576AC00891327163471        
S/G/Y/R/B/O NT_006576AC08486927299511        
S/G/Y/R/B/O NT_006576AC09184927757651        
S/G/Y/R/B/O NT_006576AC02641228149442        
S/G/Y/R/B/O NT_006576AC01649828163661        
S/G/Y/R/B/O NT_006576AC09193328396752        
S/G/Y/R/B/O NT_006576AC09188928711391        
S/G/Y/R/B/O NT_006576AC02212928906621        
S/G/Y/R/B/O NT_006576AC01028129699973UT5058  59.411AC026711, AC010281, AC026711
S/G/Y/R/B/O NT_006576AC01028130078493AFMA050ZD958.2059.411AC026711, AC010281, AC026711, AC027337
S/G/Y/R/B/O NT_006576AC02671130718923        
S/G/Y/R/B/O NT_006576AC10679931468793        
S/G/Y/R/B/O NT_006576AC01063432780903        
S/G/Y/R/B/O NT_006576AC11430333774733        
S/G/Y/R/B/O NT_006576AC02671934235723        
S/G/Y/R/B/O NT_006576AC02641535664113        
S/G/Y/R/B/O NT_006576AC02212736226403        
S/G/Y/R/B/O NT_006576AC01045137054713AFM154XG3510.70511.851 AC010451, AC010597
S/G/Y/R/B/O NT_006576AC02242437946793        
S/G/Y/R/B/O NT_006576AC01026938792583        
S/G/Y/R/B/O NT_006576AC09197839927032        
S/G/Y/R/B/O NT_006576AC09196740261963        
S/G/Y/R/B/O NT_006576AC01260742134413        
S/G/Y/R/B/O NT_006576AC02679942505343        
S/G/Y/R/B/O NT_006576AC02673643869123        
S/G/Y/R/B/O NT_006576AC00557245082233GATA3E10  522.881 AC010433
S/G/Y/R/B/O NT_006576AC00463345711353        
S/G/Y/R/B/O NT_006576AC00395447111733AFMA240XF9521.90522.341 AC003954
S/G/Y/R/B/O NT_006576AC00536747863353MFD48A  522.341 AC003089, AC005367, AC025474, AC026417
S/G/Y/R/B/O NT_006576AC00464848602383        
S/G/Y/R/B/O NT_006576AC00561050125743AFM318ZH5521.40522.341 AC005610, AC093282
S/G/Y/R/B/O NT_006576AC00561051120703AFM179XD10521.40524.481 AC005610, AC026721, AC093282
S/G/Y/R/B/O NT_006576AC01062651158063        
S/G/Y/R/B/O NT_006576AC09199052229333        
S/G/Y/R/B/O NT_006576AC01262954004853AFM255XB9521.40522.881 AC012629, AC023112
S/G/Y/R/B/O NT_006576AC10676054241343        
S/G/Y/R/B/O NT_006576AC11220055023242        
S/G/Y/R/B/O NT_006576AC02624455101081        
S/G/Y/R/B/O NT_006576AC01632755131211        


  NT_006576 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006576AC09233655935703AFMA352YG5520.50521.811AC091876, AC091876
S/G/Y/R/B/O NT_006576AC02518457127071        
S/G/Y/R/B/O NT_006576AC01264060594402AFM042XA11520.40521.811AC008913, AC020920, AC025184, AC008913, AC012640, AC020920, AC025184
S/G/Y/R/B/O NT_006576AC09187657339121        
S/G/Y/R/B/O NT_006576AC01113557344321        
S/G/Y/R/B/O NT_006576AC06397557355461        
S/G/Y/R/B/O NT_006576AC02546258149171        
S/G/Y/R/B/O NT_006576AC02699758644531        
S/G/Y/R/B/O NT_006576AC11636158707231UT778  517.531AC026997, AC026997, AC116361
S/G/Y/R/B/O NT_006576AC01027476301592GATA84E11  514.301 AC010274
S/G/Y/R/B/O NT_006576AC01046459686882        
S/G/Y/R/B/O NT_006576AC09195159725931        
S/G/Y/R/B/O NT_006576AC02092060503891        
S/G/Y/R/B/O NT_006576AC03424160752003        
S/G/Y/R/B/O NT_006576AC03422961666732        
S/G/Y/R/B/O NT_006576AC02292162679221        
S/G/Y/R/B/O NT_006576AC02517462824803        
S/G/Y/R/B/O NT_006576AC01034663521403        
S/G/Y/R/B/O NT_006576AC09330564617661        
S/G/Y/R/B/O NT_006576AC11495265229341        
S/G/Y/R/B/O NT_006576AC01043765922903AFMA108WB1515.60516.721 AC010437
S/G/Y/R/B/O NT_006576AC11336666279301        
S/G/Y/R/B/O NT_006576AC02645067181852        
S/G/Y/R/B/O NT_006576AC01039967694413        
S/G/Y/R/B/O NT_006576AC02457768114543AFM347YG9515.60516.721AC010399, AC010399, AC024577, AC025440, AC114944
S/G/Y/R/B/O NT_006576AC02734368552513        
S/G/Y/R/B/O NT_006576AC02575670094973        
S/G/Y/R/B/O NT_006576AC10810071043673        
S/G/Y/R/B/O NT_006576AC02577071698433        
S/G/Y/R/B/O NT_006576AC11218173600602        
S/G/Y/R/B/O NT_006576AC02077173633911        
S/G/Y/R/B/O NT_006576AC01063573712661AFM276YB9513.80514.911AC020935, AC010635, AC020935
S/G/Y/R/B/O NT_006576AC09330774810591UT1993  514.301AC026670, AC026670, AC093307
S/G/Y/R/B/O NT_006576AC02667075057421        
S/G/Y/R/B/O NT_006576AC02733475069911        
S/G/Y/R/B/O NT_006576AC02674576499482AFM112XE3513.20514.301AC010274, AC063974, AC010274, AC063974
S/G/Y/R/B/O NT_006576AC02674576905142AFMB355WB1513.20514.301 AC026745
S/G/Y/R/B/O NT_006576AC02492877054521        
S/G/Y/R/B/O NT_006576AC06397477118511        
S/G/Y/R/B/O NT_006576AC01026677472742        
S/G/Y/R/B/O NT_006576AC06801577646051        
S/G/Y/R/B/O NT_006576AC01036677830683        
S/G/Y/R/B/O NT_006576AC01050080361253        
S/G/Y/R/B/O NT_006576AC02679782113783GAAT1A12  514.791 AC026797
S/G/Y/R/B/O NT_006576AC09198882248483        
S/G/Y/R/B/O NT_006576AC02093583078451        
S/G/Y/R/B/O NT_006576AC09184683370641        
S/G/Y/R/B/O NT_006576AC01907983443411        
S/G/Y/R/B/O NT_006576AC02750183884791        
S/G/Y/R/B/O NT_006576AC09191284091813UT615  517.871AC019079, AC027501, AC091846, AC019079, AC027501, AC091846, AC091912, AC091941


  NT_006576 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006576AC10677684989882        
S/G/Y/R/B/O NT_006576AC03421785842793        
S/G/Y/R/B/O NT_006576AC09196587075383        
S/G/Y/R/B/O NT_006576AC02732887654723AFMA124WG5517.70519.021 AC027328
S/G/Y/R/B/O NT_006576AC00208788000543        
S/G/Y/R/B/O NT_006576AC09193289193481        
S/G/Y/R/B/O NT_006576AC09193790871473        
S/G/Y/R/B/O NT_006576AC09189592551153MFD88A  522.351AC021088, AC021088, AC091895
S/G/Y/R/B/O NT_006576AC02108892707223        
S/G/Y/R/B/O NT_006576AC02733693373003        
S/G/Y/R/B/O NT_006576AC02244694765103GATA3A04  519.021 AC004615, AC022446
S/G/Y/R/B/O NT_006576AC09190696503933AFMA055ZD9518.60519.671AC073986, AC004615, AC073986, AC091906
S/G/Y/R/B/O NT_006576AC05348596848641        
S/G/Y/R/B/O NT_006576AC02733596868921        
S/G/Y/R/B/O NT_006576AC01041697854042        
S/G/Y/R/B/O NT_006576AC03421498295503AFM268ZD9518.60519.671 AC003015, AC034214
S/G/Y/R/B/O NT_006576AC03421499017663AFMC022YA5518.60519.671AC026787, AC026787
S/G/Y/R/B/O NT_006576AC02678799034863        
S/G/Y/R/B/O NT_006576AC09183899951783        
S/G/Y/R/B/O NT_006576AC091958100884543        
S/G/Y/R/B/O NT_006576AC010629102398473AFMA204ZE1518.60519.671 AC002479, AC010629
S/G/Y/R/B/O NT_006576AC091905104081073GATA21F08  521.101AC027494, AC027494, AC091905
S/G/Y/R/B/O NT_006576AC112176105096871        
S/G/Y/R/B/O NT_006576AC026443105764633        
S/G/Y/R/B/O NT_006576AC025183106928072        
S/G/Y/R/B/O NT_006576AC023921107242941        
S/G/Y/R/B/O NT_006576AC021087107850782        
S/G/Y/R/B/O NT_006576AC010443109438811ATA20G07  50.002AC113430, AC010443, AC027825, AC113430
S/G/Y/R/B/O NT_006576AC113430109918641        
S/G/Y/R/B/O NT_006576AC114943110767371        
S/G/Y/R/B/O NT_006576AC026748113856021AFMA139YA950.0051.721AC022130, AC114955, AC022130, AC114955
S/G/Y/R/B/O NT_006576AF119117112988423        
S/G/Y/R/B/O NT_006576AC022130114093191AFMB002XC150.0051.721AC114955, AC114955
S/G/Y/R/B/O NT_006576AC114955114321551        
S/G/Y/R/B/O NT_006576AY007685114754753        
S/G/Y/R/B/O NT_006576AP001130115444831        
S/G/Y/R/B/O NT_006576AC010427116578081        
S/G/Y/R/B/O NT_006576AC027494116603941        
S/G/Y/R/B/O NT_006576AC073986116763011        
S/G/Y/R/B/O NT_006576AC010446116998851        
S/G/Y/R/B/O NT_006576AC116351117593321AFMA217ZH150.6051.721 AC116351
S/G/Y/R/B/O NT_006576AC105412120842691