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  Chromosome 5 - Genetic Maps - Single Contig
 

Chromosome 5 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006713
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006713AC016559734867171GATA52A12  585.251 AC016559
S/G/Y/R/B/O NT_006713AC021994734791761        
S/G/Y/R/B/O NT_006713AC068682734950431        
S/G/Y/R/B/O NT_006713AC108106735213872        
S/G/Y/R/B/O NT_006713AC008851736219203        
S/G/Y/R/B/O NT_006713AC026775737523363        
S/G/Y/R/B/O NT_006713AC034227738856482        
S/G/Y/R/B/O NT_006713AC067814739487341        
S/G/Y/R/B/O NT_006713AC116340741240141AFMA312ZF5  575.891 AC084147
S/G/Y/R/B/O NT_006713AC116340741240141AFMA312ZF5575.30  1 AC084147
S/G/Y/R/B/O NT_006713AC116340741551601AFM281YH9  575.891AC021318, AC021318, AC084147, AC116340
S/G/Y/R/B/O NT_006713AC116340741551601AFM281YH9576.50  1AC021318, AC021318, AC084147, AC116340
S/G/Y/R/B/O NT_006713AC034221741685531        
S/G/Y/R/B/O NT_006713AC025774741712162        
S/G/Y/R/B/O NT_006713AC021318742258151        
S/G/Y/R/B/O NT_006713AC093218743059431GATA30E05  575.891AC021318, AC021318, AC093218
S/G/Y/R/B/O NT_006713AC012609743729002        
S/G/Y/R/B/O NT_006713AC026406744415683        
S/G/Y/R/B/O NT_006713AC093278745642723        
S/G/Y/R/B/O NT_006713AC008457746926961        
S/G/Y/R/B/O NT_006713AC013508747004051        
S/G/Y/R/B/O NT_006713AC008886747345453        
S/G/Y/R/B/O NT_006713AC063979748418863AFM294WD1579.20578.311 AC008843, AC063979
S/G/Y/R/B/O NT_006713AC063979748557503AFMA104XD9579.30578.311 AC063979
S/G/Y/R/B/O NT_006713AC035140750033683        
S/G/Y/R/B/O NT_006713AC008953750890983MFD151A  581.951 AC008953, AC009050
S/G/Y/R/B/O NT_006713AC008972751304943        
S/G/Y/R/B/O NT_006713AC020893752227063        
S/G/Y/R/B/O NT_006713AC020942753235243        
S/G/Y/R/B/O NT_006713AC035141753967662        
S/G/Y/R/B/O NT_006713AC072029754001821        
S/G/Y/R/B/O NT_006713AC116345754127951        
S/G/Y/R/B/O NT_006713AC093302754381303        
S/G/Y/R/B/O NT_006713AC093204755695611        
S/G/Y/R/B/O NT_006713AC099522755739412        
S/G/Y/R/B/O NT_006713AC018349756742441        
S/G/Y/R/B/O NT_006713AC114962758584421AFM214ZG9582.80581.951AC068682, AC068682, AC114962
S/G/Y/R/B/O NT_006713AC027342758300373AFMA204ZF1582.20581.221 AC027342
S/G/Y/R/B/O NT_006713AC008581758391152        
S/G/Y/R/B/O NT_006713AC010377758538431        
S/G/Y/R/B/O NT_006713AC010621758791503        
S/G/Y/R/B/O NT_006713AC025188759189023        
S/G/Y/R/B/O NT_006713AC026706760622373        
S/G/Y/R/B/O NT_006713AC026725760936013        
S/G/Y/R/B/O NT_006713AC112173761893543        
S/G/Y/R/B/O NT_006713AC093251762921253        
S/G/Y/R/B/O NT_006713AC026783763542723        
S/G/Y/R/B/O NT_006713AC113404764627452        
S/G/Y/R/B/O NT_006713AC106764764881751        
S/G/Y/R/B/O NT_006713AC008765765578542        


  NT_006713 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006713AC108091765650053        
S/G/Y/R/B/O NT_006713AC026774765927243        
S/G/Y/R/B/O NT_006713AC109476767013241        
S/G/Y/R/B/O NT_006713AC022414768371873        
S/G/Y/R/B/O NT_006713AC022422770439823AFMB330YD9582.20581.951 AC022422
S/G/Y/R/B/O NT_006713AC010234771782883AFMA137ZF1582.80581.951AC108173, AC010234, AC021464, AC108173
S/G/Y/R/B/O NT_006713AC108173772236083        
S/G/Y/R/B/O NT_006713AC026717773497423        
S/G/Y/R/B/O NT_006713AC035147774116133        
S/G/Y/R/B/O NT_006713AC108482775082673        
S/G/Y/R/B/O NT_006713AC024578776572713        
S/G/Y/R/B/O NT_006713AC024568776595223        
S/G/Y/R/B/O NT_006713AC008493777880723        
S/G/Y/R/B/O NT_006713AC112197778087661        
S/G/Y/R/B/O NT_006713AC015785778180001        
S/G/Y/R/B/O NT_006713AC104108779432852        
S/G/Y/R/B/O NT_006713AC010585780621803        
S/G/Y/R/B/O NT_006713AC010252783150053AFM290VF5584.10583.271 AC010252
S/G/Y/R/B/O NT_006713AC008802783531033        
S/G/Y/R/B/O NT_006713AC025755784355843        
S/G/Y/R/B/O NT_006713AC099485785109053        
S/G/Y/R/B/O NT_006713AC114963785880823        
S/G/Y/R/B/O NT_006713AC020937786228593        
S/G/Y/R/B/O NT_006713AC008502787056483        
S/G/Y/R/B/O NT_006713AC069033788054911        
S/G/Y/R/B/O NT_006713AC022110788150291        
S/G/Y/R/B/O NT_006713AC020898789032193        
S/G/Y/R/B/O NT_006713AC093270790480522        
S/G/Y/R/B/O NT_006713AC008482792463923AFM324WH1585.50586.261 AC008482
S/G/Y/R/B/O NT_006713AC026779793568483        
S/G/Y/R/B/O NT_006713AC010344793651743        
S/G/Y/R/B/O NT_006713AC008496794069793        
S/G/Y/R/B/O NT_006713AC112184795334813        
S/G/Y/R/B/O NT_006713AC012636797068273        
S/G/Y/R/B/O NT_006713AC010260797901673        
S/G/Y/R/B/O NT_006713AC026410799126563        
S/G/Y/R/B/O NT_006713AC008771801486893UT6142  585.251AC018764, AC008771, AC018764
S/G/Y/R/B/O NT_006713AC018764801711213        
S/G/Y/R/B/O NT_006713AC010279802441763        
S/G/Y/R/B/O NT_006713AC008387803699223        
S/G/Y/R/B/O NT_006713AC026702804730053        
S/G/Y/R/B/O NT_006713AC091868805601202        
S/G/Y/R/B/O NT_006713AC093283805646723        
S/G/Y/R/B/O NT_006713AC022138807721723AFMA222WD1579.10578.311 AC022138
S/G/Y/R/B/O NT_006713AC026796808582943        
S/G/Y/R/B/O NT_006713AC091899809407253AFMA245WE9579.00578.311 AC016243, AC021456, AC021570, AC091899
S/G/Y/R/B/O NT_006713AC106732810223043        
S/G/Y/R/B/O NT_006713AC091892811408323        
S/G/Y/R/B/O NT_006713AC026697811543173AFMB330ZG5579.30578.311 AC024548
S/G/Y/R/B/O NT_006713AC091858812417603        


  NT_006713 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006713AC010444813011963        
S/G/Y/R/B/O NT_006713AC026405813549733        
S/G/Y/R/B/O NT_006713AC093214814909683        
S/G/Y/R/B/O NT_006713AC016594816137913        
S/G/Y/R/B/O NT_006713AC010501816433232        
S/G/Y/R/B/O NT_006713AC116337816676021        
S/G/Y/R/B/O NT_006713AC020566816811561        
S/G/Y/R/B/O NT_006713AC008769817285782AFMA348WD1579.30578.311 AC008769
S/G/Y/R/B/O NT_006713AC008769818202512UT1518  578.311AC021994, AC008769, AC021994
S/G/Y/R/B/O NT_006713AC093259818223363