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Chromosome 5 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006731
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006731AC012605948613191        
S/G/Y/R/B/O NT_006731AC021564948616131        
S/G/Y/R/B/O NT_006731AC104127948729791        
S/G/Y/R/B/O NT_006731AC013344949074701        
S/G/Y/R/B/O NT_006731AC020919949782912        
S/G/Y/R/B/O NT_006731AC114961950508081        
S/G/Y/R/B/O NT_006731AC012619950707043        
S/G/Y/R/B/O NT_006731AC008516951182372        
S/G/Y/R/B/O NT_006731AC010242951815791        
S/G/Y/R/B/O NT_006731AC108102952217323        
S/G/Y/R/B/O NT_006731AC099501953827883        
S/G/Y/R/B/O NT_006731AC106808954118071        
S/G/Y/R/B/O NT_006731AC114980954789841        
S/G/Y/R/B/O NT_006731AC019025954902661        
S/G/Y/R/B/O NT_006731AC093268955853331        
S/G/Y/R/B/O NT_006731AC021807955916581        
S/G/Y/R/B/O NT_006731AC021484957520841        
S/G/Y/R/B/O NT_006731AC010283958386143        
S/G/Y/R/B/O NT_006731AC010448959965103        
S/G/Y/R/B/O NT_006731AC007833959992321        
S/G/Y/R/B/O NT_006731AC093311960571551        
S/G/Y/R/B/O NT_006731AC018806961300531        
S/G/Y/R/B/O NT_006731AC025766962059873        
S/G/Y/R/B/O NT_006731AC008534962896923        
S/G/Y/R/B/O NT_006731AC012312965396033        
S/G/Y/R/B/O NT_006731AC011205966146491        
S/G/Y/R/B/O NT_006731AC099507966154252        
S/G/Y/R/B/O NT_006731AC009680966554541        
S/G/Y/R/B/O NT_006731AC010429967570853        
S/G/Y/R/B/O NT_006731AC106749969030693        
S/G/Y/R/B/O NT_006731AC108122969320473        
S/G/Y/R/B/O NT_006731AC091824969891773        
S/G/Y/R/B/O NT_006731AC026408970956463        
S/G/Y/R/B/O NT_006731AC012625971594563        
S/G/Y/R/B/O NT_006731AC008517973620863GATA5F09  5102.621 AC008517, AC010640
S/G/Y/R/B/O NT_006731AC026781974863723        
S/G/Y/R/B/O NT_006731AC026780975175163AFMA065XD9599.90  1 AC026780
S/G/Y/R/B/O NT_006731AC026780975175163AFMA065XD9  5101.021 AC026780