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  Chromosome 5 - Genetic Maps - Single Contig
 

Chromosome 5 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006788
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006788AC0087261602779951        
S/G/Y/R/B/O NT_006788AC1149591602834071        
S/G/Y/R/B/O NT_006788AC0224101603247753GATA68A01  5157.571AC011368, AC011368
S/G/Y/R/B/O NT_006788AC0224101603461153AFM311VF95156.805157.021AC114959, AC114959
S/G/Y/R/B/O NT_006788AC0113681603927753UT2159  5160.871 AC011368
S/G/Y/R/B/O NT_006788AC0113511604990463GATA43C02  5158.121 AC011351
S/G/Y/R/B/O NT_006788AC0114131605420453        
S/G/Y/R/B/O NT_006788AC0113471607434313AFM210VG35157.605158.121AC010304, AC010304
S/G/Y/R/B/O NT_006788AC0103041607494883        
S/G/Y/R/B/O NT_006788AC0273081608221023AFM207WC115159.205159.771 AC027308
S/G/Y/R/B/O NT_006788AC0113451610693863GATA51G10  5159.221AC008726, AC008726, AC011345
S/G/Y/R/B/O NT_006788AC0085351610993593        
S/G/Y/R/B/O NT_006788AC0165771611974983GATA6E05  5159.771 AC016577
S/G/Y/R/B/O NT_006788AC0254341612165893        
S/G/Y/R/B/O NT_006788AC0114141613057673        
S/G/Y/R/B/O NT_006788AC0084911613690003        
S/G/Y/R/B/O NT_006788AC0267771614661023        
S/G/Y/R/B/O NT_006788AC0113771615844363        
S/G/Y/R/B/O NT_006788AC0106091617580133AFMA083XB95159.205159.771AC009185, AC009185, AC010609
S/G/Y/R/B/O NT_006788AC0083891617628853        
S/G/Y/R/B/O NT_006788AC0091851617689543        
S/G/Y/R/B/O NT_006788AC0165711618155163        
S/G/Y/R/B/O NT_006788AC0086761618758183        
S/G/Y/R/B/O NT_006788AC1068011620565143        
S/G/Y/R/B/O NT_006788AC0086941620713492        
S/G/Y/R/B/O NT_006788AC0677621620790121ATA19A12  5162.332AC091884, AC067762, AC091884
S/G/Y/R/B/O NT_006788AC0919281621635543MFD269  5162.471 AC091928
S/G/Y/R/B/O NT_006788AC0918841623677363ATA19A12  5162.332AC067762, AC067762, AC091884
S/G/Y/R/B/O NT_006788AC0267721624818003AFM268WE95161.705162.001 AC024410
S/G/Y/R/B/O NT_006788AC0086581625988522UT1377  5161.401 AC008658
S/G/Y/R/B/O NT_006788AC0221201625820261        
S/G/Y/R/B/O NT_006788AC0084051625998171        
S/G/Y/R/B/O NT_006788AC0461411626159641        
S/G/Y/R/B/O NT_006788AC0087121626815493AFMA114ZF15163.005163.251AC008405, AC022120, AC008405, AC022120
S/G/Y/R/B/O NT_006788AC0087121626967343AFMA102ZG95161.605162.161AC008658, AC008658, AC008712
S/G/Y/R/B/O NT_006788AC0918821627941013        
S/G/Y/R/B/O NT_006788AC0919891628324523        
S/G/Y/R/B/O NT_006788AC0213641629953211        
S/G/Y/R/B/O NT_006788AC0163031630320851        
S/G/Y/R/B/O NT_006788AC0919441630557291        
S/G/Y/R/B/O NT_006788AC1081301630660981        
S/G/Y/R/B/O NT_006788AC0086111631728631        
S/G/Y/R/B/O NT_006788AC0210791632187653        
S/G/Y/R/B/O NT_006788AF1651241633596003        
S/G/Y/R/B/O NT_006788AC0919261635555093        
S/G/Y/R/B/O NT_006788AC0919841636192343        
S/G/Y/R/B/O NT_006788AC0919081636745683        
S/G/Y/R/B/O NT_006788AC0919961636909193        
S/G/Y/R/B/O NT_006788AC0919011638568483        
S/G/Y/R/B/O NT_006788AC0106021640589373AFM211YC75163.905164.191 AC010224, AC069370


  NT_006788 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006788AC0919211641997253UT5637  5164.191 AC015479, AC091921
S/G/Y/R/B/O NT_006788AC0211601643142591        
S/G/Y/R/B/O NT_006788AC1134141643359233        
S/G/Y/R/B/O NT_006788AC0919301644952633        
S/G/Y/R/B/O NT_006788AC0919761646032523        
S/G/Y/R/B/O NT_006788AC0084281646751263        
S/G/Y/R/B/O NT_006788AC0087231648254543AFMA053YF15164.005164.191 AC008723
S/G/Y/R/B/O NT_006788AC1122051649280083        
S/G/Y/R/B/O NT_006788AC0102911649862673        
S/G/Y/R/B/O NT_006788AC0113391650864723        
S/G/Y/R/B/O NT_006788AC1143211651644111        
S/G/Y/R/B/O NT_006788AC0257451652366401        
S/G/Y/R/B/O NT_006788AC0165781652388992        
S/G/Y/R/B/O NT_006788AC0084991652742553        
S/G/Y/R/B/O NT_006788AC0084891654616753        
S/G/Y/R/B/O NT_006788AC0085621656123243AFM203XA75169.405169.451 AC008562
S/G/Y/R/B/O NT_006788AC0083841656640093        
S/G/Y/R/B/O NT_006788AC0084151657336823AFMB330WA95168.505168.681AC008384, AC008384, AC008415
S/G/Y/R/B/O NT_006788AC0084151658248023AFMB317YD95168.505169.111AC008646, AC008415, AC008646, AC091927
S/G/Y/R/B/O NT_006788AC0084151658379433AFM214ZA95169.305169.451 AC008415, AC091927
S/G/Y/R/B/O NT_006788AC0086461658944012        
S/G/Y/R/B/O NT_006788AC0104281659635263        
S/G/Y/R/B/O NT_006788AC0114031660182723        
S/G/Y/R/B/O NT_006788AC0086441661125263        
S/G/Y/R/B/O NT_006788AC0083961662128072        
S/G/Y/R/B/O NT_006788AC1094661662673123        
S/G/Y/R/B/O NT_006788AC0919071663687273        
S/G/Y/R/B/O NT_006788AC0919231665191773        
S/G/Y/R/B/O NT_006788AC0084161665926362        
S/G/Y/R/B/O NT_006788AC0087241666459823        
S/G/Y/R/B/O NT_006788AC0084461667997473AFM200ZA115167.505167.691 AC008446, AC024317
S/G/Y/R/B/O NT_006788AC0919741668030143        
S/G/Y/R/B/O NT_006788AC0919971669339673        
S/G/Y/R/B/O NT_006788AC0113921670501353        
S/G/Y/R/B/O NT_006788AC0086621671142401        
S/G/Y/R/B/O NT_006788AC0083761671815211        
S/G/Y/R/B/O NT_006788AC0086031673686813        
S/G/Y/R/B/O NT_006788AC0084321674381473AFMC033XH15164.905165.131AC008603, AC008603
S/G/Y/R/B/O NT_006788AP0015861676061081        
S/G/Y/R/B/O NT_006788AC0116881676187571        
S/G/Y/R/B/O NT_006788AC1067591676505703        
S/G/Y/R/B/O NT_006788AC0264071676669073        
S/G/Y/R/B/O NT_006788AC0113941678137033        
S/G/Y/R/B/O NT_006788AC0224111678549523        
S/G/Y/R/B/O NT_006788AC0086771679046783UT8057  5159.771 AC007526
S/G/Y/R/B/O NT_006788AC0086771679973183UT6511  5160.871 AC008677, AL136059
S/G/Y/R/B/O NT_006788AC0918801680505383        
S/G/Y/R/B/O NT_006788AC0254371682580053AFMB343XE95160.405160.871AC091975, AL162332, AC025437, AC091975, AL162332
S/G/Y/R/B/O NT_006788AC0919751682619612        
S/G/Y/R/B/O NT_006788AL1623321682675882        


  NT_006788 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006788AC0919521682761973        
S/G/Y/R/B/O NT_006788AC0126861684264411        
S/G/Y/R/B/O NT_006788AC0919001686090633MFD116  5156.472AC093267, AC093505, AC091900, AC093267, AC093505
S/G/Y/R/B/O NT_006788AC0935051686121083        
S/G/Y/R/B/O NT_006788AC0218001687230101        
S/G/Y/R/B/O NT_006788AC0216801687242911        
S/G/Y/R/B/O NT_006788AC0919621687367411        
S/G/Y/R/B/O NT_006788AC0919601688433572        
S/G/Y/R/B/O NT_006788AC0086981689431073        
S/G/Y/R/B/O NT_006788AC0251561689815253        
S/G/Y/R/B/O NT_006788AC0106131691004653AFMA212WG15156.005156.471AC025156, AC010613, AC025156
S/G/Y/R/B/O NT_006788AC0106131691061823AFMB007YF15156.005156.471 AC010613
S/G/Y/R/B/O NT_006788AC0106131691286353AFM323WE15156.005156.471AC025156, AC010613, AC025156
S/G/Y/R/B/O NT_006788AC0220991691642902        
S/G/Y/R/B/O NT_006788AC0102441692111413AFM191XD85156.005156.471AC022099, AC010244, AC021239, AC022099, AC091991
S/G/Y/R/B/O NT_006788AC0102321693222283        
S/G/Y/R/B/O NT_006788AC0220881694881483        
S/G/Y/R/B/O NT_006788AC0102951696110602AFMB027XC15156.005157.211 AC010295
S/G/Y/R/B/O NT_006788AC0086721696268893        
S/G/Y/R/B/O NT_006788AC0086751697660553AFM234YH85156.005157.021 AC010367
S/G/Y/R/B/O NT_006788AC0086251698480243        
S/G/Y/R/B/O NT_006788AC0266881699231663AFMB299YG55156.805157.411AC022412, AC022412, AC106758
S/G/Y/R/B/O NT_006788AC0224121700232031        
S/G/Y/R/B/O NT_006788AP0020161700246841        
S/G/Y/R/B/O NT_006788AC1121691700258381        
S/G/Y/R/B/O NT_006788AC0084211700736071        
S/G/Y/R/B/O NT_006788AC0257471700956251        
S/G/Y/R/B/O NT_006788AC0084101701458822        
S/G/Y/R/B/O NT_006788AC0694891703142331        
S/G/Y/R/B/O NT_006788AC0083791703330593        
S/G/Y/R/B/O NT_006788AC1121751704135111        
S/G/Y/R/B/O NT_006788AC0104761704641543        
S/G/Y/R/B/O NT_006788AC1100041706164873        
S/G/Y/R/B/O NT_006788AC0086851706605323        
S/G/Y/R/B/O NT_006788AC0105911707771413        
S/G/Y/R/B/O NT_006788AC1081291708881983        
S/G/Y/R/B/O NT_006788AC0094831709063943        
S/G/Y/R/B/O NT_006788AC1081161711006071        
S/G/Y/R/B/O NT_006788AC0919791712322893AFMC008ZF95160.305160.871 AC068391, AC091979
S/G/Y/R/B/O NT_006788AC0919391712690823        
S/G/Y/R/B/O NT_006788AC0084421715750563AFM198WE115161.005161.401 AC008442
S/G/Y/R/B/O NT_006788AC0113441715983102        
S/G/Y/R/B/O NT_006788AC0072001717230883AFMA184WD55161.705161.941 AC007200
S/G/Y/R/B/O NT_006788AC0113761718031512UT5972  5161.401 AC011376
S/G/Y/R/B/O NT_006788AC0114181718400923        
S/G/Y/R/B/O NT_006788AC0086971719486033        
S/G/Y/R/B/O NT_006788AC0087031720503273        
S/G/Y/R/B/O NT_006788AC1149601722282071        
S/G/Y/R/B/O NT_006788AC0084001723134121        
S/G/Y/R/B/O NT_006788AC0096091724518101        


  NT_006788 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006788 - AFMB326YD95160.905161.400  
S/G/Y/R/B/O NT_006788 - AFM136XD25162.205162.471AC008678, AC091842, AC008678, AC091842