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Chromosome 5 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_023124
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023124AC114323301690091        
S/G/Y/R/B/O NT_023124AC016808301846731        
S/G/Y/R/B/O NT_023124AC027345302382693        
S/G/Y/R/B/O NT_023124AC010340303641413        
S/G/Y/R/B/O NT_023124AC106784304672942        
S/G/Y/R/B/O NT_023124AC112172305387873        
S/G/Y/R/B/O NT_023124AC025771306313533        
S/G/Y/R/B/O NT_023124AC099486307685223        
S/G/Y/R/B/O NT_023124AC108082308807482        
S/G/Y/R/B/O NT_023124AC010374310857613AFM311VB9540.60541.061AC018765, AC010374, AC018765
S/G/Y/R/B/O NT_023124AC018765311181723AFMC011XB1540.60541.061 AC010418, AC018765
S/G/Y/R/B/O NT_023124AC091856312510013GATA85C07  541.061 AC091856
S/G/Y/R/B/O NT_023124AC114300313796731        
S/G/Y/R/B/O NT_023124AC106735314947912        
S/G/Y/R/B/O NT_023124AC116309315150333        
S/G/Y/R/B/O NT_023124AC025757316911453        
S/G/Y/R/B/O NT_023124AC099517317612753        
S/G/Y/R/B/O NT_023124AC113429318723823        
S/G/Y/R/B/O NT_023124AC026433318795253        
S/G/Y/R/B/O NT_023124AC091854320160263GATA5C10  541.061 AC078928, AC091854, AC093215
S/G/Y/R/B/O NT_023124AC026421320588953        
S/G/Y/R/B/O NT_023124AC091867322371623UT5148  541.061 AC091867
S/G/Y/R/B/O NT_023124AC113386323047673        
S/G/Y/R/B/O NT_023124AC091898324676913MFD34  541.061 AC008159, AC091898
S/G/Y/R/B/O NT_023124AC008768325028803        
S/G/Y/R/B/O NT_023124AC106802326159962        
S/G/Y/R/B/O NT_023124AC022417326451563        
S/G/Y/R/B/O NT_023124AC022447328474683AFMA286YA9544.40545.341 AC010363, AC022447
S/G/Y/R/B/O NT_023124AC022447328727403AFMA238ZA9544.50544.731 AC010363, AC022447
S/G/Y/R/B/O NT_023124AC010469329070253        
S/G/Y/R/B/O NT_023124AC027330330019761        
S/G/Y/R/B/O NT_023124AC025458330387401AFM177XB4544.60545.341AC027330, AC025458, AC026718, AC027330
S/G/Y/R/B/O NT_023124AC010449330909471        
S/G/Y/R/B/O NT_023124AC114299331662611MFD40  547.091 AC114299
S/G/Y/R/B/O NT_023124AC022443332074583        
S/G/Y/R/B/O NT_023124AC010343332270243        
S/G/Y/R/B/O NT_023124AC034223333537713        
S/G/Y/R/B/O NT_023124AC025459335112743GATA147G01  547.091 AC025459, AC026751
S/G/Y/R/B/O NT_023124AC026703335340583        
S/G/Y/R/B/O NT_023124AC008766336401683        
S/G/Y/R/B/O NT_023124AC021128337876981        
S/G/Y/R/B/O NT_023124AC025178338419882        
S/G/Y/R/B/O NT_023124AC022444339010342AFMA297WA5546.70547.091 AC022444
S/G/Y/R/B/O NT_023124AC025181339861992        
S/G/Y/R/B/O NT_023124AC091961340300923        
S/G/Y/R/B/O NT_023124AC008949341303013UT1273  545.341 AC008949
S/G/Y/R/B/O NT_023124AC034240342770303GATA7C06  545.341AC017039, AC017039
S/G/Y/R/B/O NT_023124AC074134343236851        
S/G/Y/R/B/O NT_023124AC017039343334591