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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_009441 | AC119566 | 60379154 | 3 | chr12 | NT_009441 | AC091517 | 60449163 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_009441 | AC091517 | 60449163 | 3 | chr12 | NT_009441 | AC080011 | 60619508 | 3 | 2006 | 0 | 0 | 2006 |
S/G/Y/R/B/O |
NT_009441 | AC091517 | 60449163 | 3 |   |   | AC025136 | 60449163 | | 25578 | 1070 | 1162 | 27810 |
S/G/Y/R/B/O |
NT_009441 | AC091517 | 60449163 | 3 |   |   | AC130400 | 60379154 | | 28931 | 0 | 0 | 28931 |
S/G/Y/R/B/O |
NT_009441 | AC080011 | 60619508 | 3 | chr12 | NT_009441 | AC087883 | 60724404 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_009441 | AC080011 | 60619508 | 3 |   |   | AC025136 | 60379154 | | 53587 | 1190 | 9494 | 64271 |
S/G/Y/R/B/O |
NT_009441 | AC080011 | 60619508 | 3 |   |   | AC091676 | 60449163 | | 57429 | 0 | 15830 | 73259 |
S/G/Y/R/B/O |
NT_009441 | AC080011 | 60619508 | 3 |   |   | AC130400 | 60449163 | | 11727 | 810 | 36810 | 49347 |
S/G/Y/R/B/O |
NT_009441 | AC087883 | 60724404 | 3 | chr12 | NT_009441 | AC130406 | 60883573 | 3 | 0 | 0 | 1635 | 1635 |
S/G/Y/R/B/O |
NT_009441 | AC087883 | 60724404 | 3 |   |   | AC025136 | 60449163 | | 25942 | 3514 | 1349 | 30805 |
S/G/Y/R/B/O |
NT_009441 | AC087883 | 60724404 | 3 |   |   | AC027211 | 60449163 | | 37339 | 0 | 55863 | 93202 |
S/G/Y/R/B/O |
NT_009441 | AC087883 | 60724404 | 3 |   |   | AC091676 | 60619508 | | 79130 | 0 | 0 | 79130 |
S/G/Y/R/B/O |
NT_009441 | AC087883 | 60724404 | 3 |   |   | AC130400 | 60619508 | | 28021 | 1117 | 0 | 29138 |
S/G/Y/R/B/O |
NT_009441 | AC130406 | 60883573 | 3 | chr12 | NT_009441 | AC090022 | 60910528 | 3 | 0 | 1992 | 0 | 1992 |
S/G/Y/R/B/O |
NT_009441 | AC130406 | 60883573 | 3 |   |   | AC027211 | 60883573 | | 25955 | 0 | 0 | 25955 |
S/G/Y/R/B/O |
NT_009441 | AC090022 | 60910528 | 3 | chr12 | NT_009441 | AC084355 | 61034999 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_009441 | AC084355 | 61034999 | 3 | chr12 | NT_009441 | AC090014 | 61212753 | 3 | 3053 | 0 | 0 | 3053 |
S/G/Y/R/B/O |
NT_009441 | AC084355 | 61034999 | 3 |   |   | AC027039 | 60883573 | | 23760 | 0 | 1731 | 25491 |
S/G/Y/R/B/O |
NT_009441 | AC084355 | 61034999 | 3 |   |   | AC090674 | 60910528 | | 44283 | 2618 | 11641 | 58542 |
S/G/Y/R/B/O |
NT_009441 | AC090014 | 61212753 | 3 | chr12 | NT_009441 | AC125492 | 61383180 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009441 | AC090014 | 61212753 | 3 |   |   | AC027039 | 60910528 | | 48230 | 0 | 16552 | 64782 |
S/G/Y/R/B/O |
NT_009441 | AC125492 | 61383180 | 3 | chr12 | NT_009441 | AC092889 | 61486488 | 1 | 74186 | 0 | 0 | 74186 |
S/G/Y/R/B/O |
NT_009441 | AC092889 | 61486488 | 1 | chr12 | NT_009441 | AC117497 | 61512069 | 3 | 46061 | 0 | 30767 | 76828 |
S/G/Y/R/B/O |
NT_009441 | AC092889 | 61486488 | 1 |   |   | AC022530 | 61486488 | | 61361 | 0 | 27703 | 89064 |
S/G/Y/R/B/O |
NT_009441 | AC092889 | 61486488 | 1 |   |   | AC022530 | 61486488 | | 61361 | 0 | 27703 | 89064 |
S/G/Y/R/B/O |
NT_009441 | AC092889 | 61486488 | 1 |   |   | AC073100 | 61486488 | | 26702 | 0 | 29281 | 55983 |
S/G/Y/R/B/O |
NT_009441 | AC092889 | 61486488 | 1 |   |   | AC073100 | 61486488 | | 26702 | 0 | 29281 | 55983 |
S/G/Y/R/B/O |
NT_009441 | AC117497 | 61512069 | 3 | chr12 | NT_009441 | AC092888 | 61599312 | 3 | 2003 | 0 | 0 | 2003 |
S/G/Y/R/B/O |
NT_009441 | AC117497 | 61512069 | 3 |   |   | AC022530 | 61383180 | | 11017 | 0 | 36825 | 47842 |
S/G/Y/R/B/O |
NT_009441 | AC117497 | 61512069 | 3 |   |   | AC073100 | 61383180 | | 35066 | 0 | 23852 | 58918 |
S/G/Y/R/B/O |
NT_009441 | AC092888 | 61599312 | 3 | chr12 | NT_009441 | AC090017 | 61766376 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009441 | AC092888 | 61599312 | 3 |   |   | AC073100 | 49040290 | | 14084 | 2212 | 9395 | 25691 |
S/G/Y/R/B/O |
NT_009441 | AC090017 | 61766376 | 3 | chr12 | NT_009441 | AC090019 | 61895078 | 3 | 2061 | 0 | 0 | 2061 |
S/G/Y/R/B/O |
NT_009441 | AC090019 | 61895078 | 3 | chr12 | NT_009441 | AC092878 | 61955580 | 1 | 60811 | 0 | 1688 | 62499 |
S/G/Y/R/B/O |
NT_009441 | AC092878 | 61955580 | 1 | chr12 | NT_009441 | AC121760 | 61959499 | 3 | 0 | 0 | 52612 | 52612 |
S/G/Y/R/B/O |
NT_009441 | AC121760 | 61959499 | 3 | chr12 | NT_009441 | AC090629 | 62081791 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009441 | AC121760 | 61959499 | 3 |   |   | AC019111 | 61959499 | | 35128 | 0 | 46831 | 81959 |
S/G/Y/R/B/O |
NT_009441 | AC090629 | 62081791 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_009441 | AC090629 | 62081791 | 3 |   |   | AC019111 | 61955580 | | 84843 | 0 | 0 | 84843 |
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