|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_035235 | AC012386 | 104043734 | 1 | chr12 | NT_035235 | AC012555 | 104045959 | 3 | 24341 | 0 | 26877 | 51218 |
S/G/Y/R/B/O |
NT_035235 | AC012386 | 104043734 | 1 | chr12 | NT_035235 | AC078819 | 104347627 | 3 | 34812 | 0 | 24343 | 59155 |
S/G/Y/R/B/O |
NT_035235 | AC012386 | 104043734 | 1 | chr12 | NT_035235 | AC084199 | 104196015 | 3 | 34916 | 0 | 26439 | 61355 |
S/G/Y/R/B/O |
NT_035235 | AC012386 | 104043734 | 1 |   |   | AC013776 | 104045959 | | 35190 | 2297 | 30806 | 68293 |
S/G/Y/R/B/O |
NT_035235 | AC012386 | 104043734 | 1 |   |   | AC023550 | 104045959 | | 17885 | 1825 | 0 | 19710 |
S/G/Y/R/B/O |
NT_035235 | AC012386 | 104043734 | 1 |   |   | AC107017 | 104196015 | | 18916 | 0 | 7769 | 26685 |
S/G/Y/R/B/O |
NT_035235 | AC012555 | 104045959 | 3 | chr12 | NT_035235 | AC084199 | 104196015 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035235 | AC084199 | 104196015 | 3 | chr12 | NT_035235 | AC078819 | 104347627 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035235 | AC084199 | 104196015 | 3 | chr12 | NT_035235 | AC012386 | 104043734 | 1 | 34916 | 0 | 26439 | 61355 |
S/G/Y/R/B/O |
NT_035235 | AC084199 | 104196015 | 3 |   |   | AC013776 | 104043734 | | 76148 | 2313 | 32511 | 110972 |
S/G/Y/R/B/O |
NT_035235 | AC084199 | 104196015 | 3 |   |   | AC023550 | 104043734 | | 53329 | 5782 | 16112 | 75223 |
S/G/Y/R/B/O |
NT_035235 | AC078819 | 104347627 | 3 | chr12 | NT_035235 | AC084359 | 104370328 | 3 | 0 | 1216 | 0 | 1216 |
S/G/Y/R/B/O |
NT_035235 | AC078819 | 104347627 | 3 | chr12 | NT_035235 | AC012386 | 104043734 | 1 | 34812 | 0 | 24343 | 59155 |
S/G/Y/R/B/O |
NT_035235 | AC078819 | 104347627 | 3 |   |   | AC013776 | 104043734 | | 76334 | 2335 | 30572 | 109241 |
S/G/Y/R/B/O |
NT_035235 | AC078819 | 104347627 | 3 |   |   | AC023550 | 104043734 | | 69422 | 7525 | 18705 | 95652 |
S/G/Y/R/B/O |
NT_035235 | AC084359 | 104370328 | 3 | chr12 | NT_035235 | AC089983 | 104373113 | 3 | 0 | 1317 | 0 | 1317 |
S/G/Y/R/B/O |
NT_035235 | AC089983 | 104373113 | 3 | chr12 | NT_035235 | AC090107 | 104576301 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_035235 | AC089983 | 104373113 | 3 |   |   | AC023550 | 104373113 | | 10450 | 0 | 14371 | 24821 |
S/G/Y/R/B/O |
NT_035235 | AC089983 | 104373113 | 3 |   |   | AC107017 | 104576301 | | 10720 | 0 | 0 | 10720 |
S/G/Y/R/B/O |
NT_035235 | AC090107 | 104576301 | 3 | chr12 | NT_035235 | AC079316 | 104656050 | 3 | 0 | 1975 | 0 | 1975 |
S/G/Y/R/B/O |
NT_035235 | AC079316 | 104656050 | 3 | chr12 | NT_035235 | AC126473 | 104834955 | 3 | 0 | 2005 | 0 | 2005 |
S/G/Y/R/B/O |
NT_035235 | AC079316 | 104656050 | 3 |   |   | AC040940 | 104373113 | | 46722 | 0 | 0 | 46722 |
S/G/Y/R/B/O |
NT_035235 | AC126473 | 104834955 | 3 | chr12 | NT_035235 | AC010191 | 104841784 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_035235 | AC010191 | 104841784 | 3 | chr12 | NT_035235 | AC073917 | 104908993 | 3 | 2006 | 0 | 0 | 2006 |
S/G/Y/R/B/O |
NT_035235 | AC010191 | 104841784 | 3 |   |   | AC040940 | 104656050 | | 28181 | 1990 | 0 | 30171 |
S/G/Y/R/B/O |
NT_035235 | AC073917 | 104908993 | 3 | chr12 | NT_035235 | AC089985 | 105070822 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_035235 | AC073917 | 104908993 | 3 |   |   | AC025332 | 104841784 | | 103770 | 0 | 0 | 103770 |
S/G/Y/R/B/O |
NT_035235 | AC073917 | 104908993 | 3 |   |   | AC073532 | 104841784 | | 143758 | 0 | 0 | 143758 |
S/G/Y/R/B/O |
NT_035235 | AC073917 | 104908993 | 3 |   |   | AC087831 | 104841784 | | 115413 | 0 | 13783 | 129196 |
S/G/Y/R/B/O |
NT_035235 | AC089985 | 105070822 | 3 | chr12 | NT_035235 | AC090051 | 105215601 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035235 | AC089985 | 105070822 | 3 |   |   | AC025332 | 105070822 | | 39699 | 11868 | 12484 | 64051 |
S/G/Y/R/B/O |
NT_035235 | AC089985 | 105070822 | 3 |   |   | AC087831 | 104908993 | | 44777 | 0 | 0 | 44777 |
S/G/Y/R/B/O |
NT_035235 | AC089985 | 105070822 | 3 |   |   | AC108691 | 104908993 | | 77588 | 0 | 0 | 77588 |
S/G/Y/R/B/O |
NT_035235 | AC090051 | 105215601 | 3 | chr12 | NT_035235 | AC016257 | 105344079 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_035235 | AC016257 | 105344079 | 3 | chr12 | NT_035235 | AC078874 | 105503174 | 3 | 138802 | 0 | 0 | 138802 |
S/G/Y/R/B/O |
NT_035235 | AC078874 | 105503174 | 3 | chr12 | NT_035235 | AC127900 | 105530524 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_035235 | AC127900 | 105530524 | 3 | chr12 | NT_035235 | AC011313 | 105566804 | 3 | 0 | 0 | 1809 | 1809 |
S/G/Y/R/B/O |
NT_035235 | AC011313 | 105566804 | 3 | chr12 | NT_035235 | AC073531 | 105657741 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035235 | AC073531 | 105657741 | 3 | chr12 | NT_035235 | AC079908 | 105867908 | 3 | 0 | 0 | 1689 | 1689 |
S/G/Y/R/B/O |
NT_035235 | AC079908 | 105867908 | 3 | chr12 | NT_035235 | AC079851 | 105925353 | 3 | 0 | 0 | 1545 | 1545 |
S/G/Y/R/B/O |
NT_035235 | AC079851 | 105925353 | 3 | chr12 | NT_035235 | AC084356 | 106005769 | 3 | 0 | 1695 | 0 | 1695 |
S/G/Y/R/B/O |
NT_035235 | AC084356 | 106005769 | 3 | chr12 | NT_035235 | AC008129 | 106183795 | 3 | 0 | 0 | 1848 | 1848 |
S/G/Y/R/B/O |
NT_035235 | AC008129 | 106183795 | 3 | chr12 | NT_035235 | AC011595 | 106258874 | 3 | 14130 | 0 | 0 | 14130 |
S/G/Y/R/B/O |
NT_035235 | AC008129 | 106183795 | 3 |   |   | AC087864 | 106005769 | | 77083 | 0 | 0 | 77083 |
S/G/Y/R/B/O |
NT_035235 | AC011595 | 106258874 | 3 | chr12 | NT_035235 | AC010182 | 106374543 | 3 | 63355 | 0 | 0 | 63355 |
S/G/Y/R/B/O |
NT_035235 | AC011595 | 106258874 | 3 |   |   | AC087864 | 106374543 | | 136496 | 0 | 0 | 136496 |
S/G/Y/R/B/O |
NT_035235 | AC010182 | 106374543 | 3 | chr12 | NT_035235 | AC009980 | 106498693 | 3 | 2037 | 0 | 0 | 2037 |
S/G/Y/R/B/O |
NT_035235 | AC010182 | 106374543 | 3 |   |   | AC087864 | 106258874 | | 47963 | 0 | 0 | 47963 |
S/G/Y/R/B/O |
NT_035235 | AC009980 | 106498693 | 3 | chr12 | NT_035235 | AC079174 | 106505057 | 3 | 0 | 2073 | 0 | 2073 |
S/G/Y/R/B/O |
NT_035235 | AC079174 | 106505057 | 3 | chr12 | NT_035235 | AC080012 | 106590797 | 3 | 2003 | 0 | 0 | 2003 |
S/G/Y/R/B/O |
NT_035235 | AC079174 | 106505057 | 3 |   |   | AC026302 | 106498693 | | 46975 | 0 | 4885 | 51860 |
S/G/Y/R/B/O |
NT_035235 | AC080012 | 106590797 | 3 | chr12 | NT_035235 | AC078992 | 106688757 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_035235 | AC078992 | 106688757 | 3 | chr12 | NT_035235 | AC009721 | 106771415 | 3 | 2006 | 0 | 0 | 2006 |
S/G/Y/R/B/O |
NT_035235 | AC078992 | 106688757 | 3 |   |   | AL359978 | 106590797 | | 37988 | 6166 | 4825 | 48979 |
S/G/Y/R/B/O |
NT_035235 | AC009721 | 106771415 | 3 | chr12 | NT_035235 | AC079385 | 106936174 | 3 | 2456 | 0 | 0 | 2456 |
S/G/Y/R/B/O |
NT_035235 | AC009721 | 106771415 | 3 |   |   | AL359978 | 106936174 | | 21970 | 10057 | 0 | 32027 |
S/G/Y/R/B/O |
NT_035235 | AC079385 | 106936174 | 3 | chr12 | NT_035235 | AC090011 | 107115327 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035235 | AC079385 | 106936174 | 3 |   |   | AC006294 | 106936174 | | 125849 | 0 | 0 | 125849 |
S/G/Y/R/B/O |
NT_035235 | AC079385 | 106936174 | 3 |   |   | AC016253 | 106771415 | | 41074 | 0 | 25084 | 66158 |
S/G/Y/R/B/O |
NT_035235 | AC090011 | 107115327 | 3 | chr12 | NT_035235 | AC007695 | 107142960 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_035235 | AC007695 | 107142960 | 3 | chr12 | NT_035235 | AC007541 | 107204207 | 3 | 0 | 0 | 252 | 252 |
S/G/Y/R/B/O |
NT_035235 | AC007695 | 107142960 | 3 |   |   | AC016253 | 107204207 | | 29786 | 0 | 32840 | 62626 |
S/G/Y/R/B/O |
NT_035235 | AC007541 | 107204207 | 3 | chr12 | NT_035235 | AC078929 | 107347399 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_035235 | AC078929 | 107347399 | 3 | chr12 | NT_035235 | AC007649 | 107453294 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035235 | AC078929 | 107347399 | 3 |   |   | AC090010 | 107204207 | | 100177 | 0 | 0 | 100177 |
S/G/Y/R/B/O |
NT_035235 | AC007649 | 107453294 | 3 | chr12 | NT_035235 | AC009774 | 107621917 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_035235 | AC009774 | 107621917 | 3 | chr12 | NT_035235 | AC007540 | 107772993 | 3 | 2006 | 0 | 0 | 2006 |
S/G/Y/R/B/O |
NT_035235 | AC007540 | 107772993 | 3 | chr12 | NT_035235 | AC007622 | 107945639 | 3 | 0 | 476 | 0 | 476 |
S/G/Y/R/B/O |
NT_035235 | AC007540 | 107772993 | 3 |   |   | AC010187 | 107621917 | | 24518 | 6931 | 12736 | 44185 |
S/G/Y/R/B/O |
NT_035235 | AC007622 | 107945639 | 3 | chr12 | NT_035235 | AC126177 | 108066863 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035235 | AC007622 | 107945639 | 3 |   |   | AC010187 | 107772993 | | 28178 | 6863 | 13639 | 48680 |
S/G/Y/R/B/O |
NT_035235 | AC126177 | 108066863 | 3 | chr12 | NT_035235 | AC009771 | 108196071 | 3 | 0 | 2028 | 0 | 2028 |
S/G/Y/R/B/O |
NT_035235 | AC009771 | 108196071 | 3 | chr12 | NT_035235 | AC009780 | 108258576 | 3 | 2097 | 0 | 0 | 2097 |
S/G/Y/R/B/O |
NT_035235 | AC009780 | 108258576 | 3 | chr12 | NT_035235 | AC009729 | 108400932 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_035235 | AC009729 | 108400932 | 3 | chr12 | NT_035235 | AC063957 | 108566155 | 3 | 2052 | 0 | 0 | 2052 |
S/G/Y/R/B/O |
NT_035235 | AC063957 | 108566155 | 3 | chr12 | NT_035235 | AC010206 | 108635532 | 3 | 0 | 1983 | 0 | 1983 |
S/G/Y/R/B/O |
NT_035235 | AC010206 | 108635532 | 3 | chr12 | NT_035235 | AC008119 | 108805070 | 3 | 78580 | 0 | 0 | 78580 |
S/G/Y/R/B/O |
NT_035235 | AC008119 | 108805070 | 3 | chr12 | NT_035235 | AC007569 | 108899639 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_035235 | AC007569 | 108899639 | 3 | chr12 | NT_035235 | AC087893 | 109006718 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_035235 | AC007569 | 108899639 | 3 |   |   | AC008081 | 108635532 | | 12686 | 0 | 0 | 12686 |
S/G/Y/R/B/O |
NT_035235 | AC007569 | 108899639 | 3 |   |   | AC008081 | 108635532 | | 12686 | 0 | 0 | 12686 |
S/G/Y/R/B/O |
NT_035235 | AC087893 | 109006718 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_035235 | AC087893 | 109006718 | 3 |   |   | AC008081 | 108899639 | | 137151 | 0 | 18737 | 155888 |
S/G/Y/R/B/O |
NT_035235 | AC087893 | 109006718 | 3 |   |   | AC008081 | 108899639 | | 137151 | 0 | 18737 | 155888 |
| |
|
|
|