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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_029419 | AC090710 | 66635324 | 3 | chr12 | NT_029419 | AC122686 | 66809626 | 3 | 0 | 1684 | 0 | 1684 |
S/G/Y/R/B/O |
NT_029419 | AC090710 | 66635324 | 3 |   |   | AC025190 | 66031290 | | 61199 | 5106 | 38010 | 104315 |
S/G/Y/R/B/O |
NT_029419 | AC122686 | 66809626 | 3 | chr12 | NT_029419 | AC022508 | 66929937 | 3 | 2097 | 0 | 0 | 2097 |
S/G/Y/R/B/O |
NT_029419 | AC022508 | 66929937 | 3 | chr12 | NT_029419 | AC078888 | 66936157 | 3 | 2082 | 0 | 0 | 2082 |
S/G/Y/R/B/O |
NT_029419 | AC078888 | 66936157 | 3 | chr12 | NT_029419 | AC134511 | 67090367 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_029419 | AC078888 | 66936157 | 3 |   |   | AC027179 | 66929937 | | 43134 | 0 | 0 | 43134 |
S/G/Y/R/B/O |
NT_029419 | AC134511 | 67090367 | 3 | chr12 | NT_029419 | AC073530 | 67212016 | 3 | 0 | 1991 | 0 | 1991 |
S/G/Y/R/B/O |
NT_029419 | AC134511 | 67090367 | 3 |   |   | AC027179 | 121609724 | | 111805 | 2342 | 5697 | 119844 |
S/G/Y/R/B/O |
NT_029419 | AC134511 | 67090367 | 3 |   |   | AC027179 | 121609724 | | 111805 | 2342 | 5697 | 119844 |
S/G/Y/R/B/O |
NT_029419 | AC073530 | 67212016 | 3 | chr12 | NT_029419 | AC012385 | 67368406 | 3 | 0 | 1658 | 0 | 1658 |
S/G/Y/R/B/O |
NT_029419 | AC012385 | 67368406 | 3 | chr12 | NT_029419 | AC012518 | 67390749 | 3 | 2041 | 0 | 0 | 2041 |
S/G/Y/R/B/O |
NT_029419 | AC012518 | 67390749 | 3 | chr12 | NT_029419 | AC078983 | 67495106 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_029419 | AC012518 | 67390749 | 3 |   |   | AC026491 | 67368406 | | 28454 | 3072 | 29699 | 61225 |
S/G/Y/R/B/O |
NT_029419 | AC012518 | 67390749 | 3 |   |   | AC078879 | 67368406 | | 18994 | 1577 | 43356 | 63927 |
S/G/Y/R/B/O |
NT_029419 | AC078983 | 67495106 | 3 | chr12 | NT_029419 | AC078824 | 67656724 | 3 | 61567 | 0 | 0 | 61567 |
S/G/Y/R/B/O |
NT_029419 | AC078983 | 67495106 | 3 |   |   | AC026491 | 67390749 | | 74962 | 0 | 7550 | 82512 |
S/G/Y/R/B/O |
NT_029419 | AC078983 | 67495106 | 3 |   |   | AC078879 | 67656724 | | 35086 | 0 | 22215 | 57301 |
S/G/Y/R/B/O |
NT_029419 | AC078983 | 67495106 | 3 |   |   | AC078887 | 67656724 | | 40396 | 0 | 27295 | 67691 |
S/G/Y/R/B/O |
NT_029419 | AC078824 | 67656724 | 3 | chr12 | NT_029419 | AC078777 | 67768854 | 3 | 45043 | 0 | 0 | 45043 |
S/G/Y/R/B/O |
NT_029419 | AC078824 | 67656724 | 3 |   |   | AC078887 | 67768854 | | 17942 | 0 | 19598 | 37540 |
S/G/Y/R/B/O |
NT_029419 | AC078777 | 67768854 | 3 | chr12 | NT_029419 | AC022513 | 67879160 | 3 | 6012 | 0 | 0 | 6012 |
S/G/Y/R/B/O |
NT_029419 | AC022513 | 67879160 | 3 | chr12 | NT_029419 | AC007617 | 67960637 | 3 | 81481 | 0 | 0 | 81481 |
S/G/Y/R/B/O |
NT_029419 | AC007617 | 67960637 | 3 | chr12 | NT_029419 | AC007286 | 68053862 | 3 | 0 | 471 | 0 | 471 |
S/G/Y/R/B/O |
NT_029419 | AC007286 | 68053862 | 3 | chr12 | NT_029419 | AC005294 | 68146392 | 3 | 0 | 1161 | 0 | 1161 |
S/G/Y/R/B/O |
NT_029419 | AC007286 | 68053862 | 3 |   |   | AC023163 | 67960637 | | 92996 | 0 | 0 | 92996 |
S/G/Y/R/B/O |
NT_029419 | AC007286 | 68053862 | 3 |   |   | AC079454 | 67960637 | | 53281 | 0 | 0 | 53281 |
S/G/Y/R/B/O |
NT_029419 | AC007286 | 68053862 | 3 |   |   | AL606524 | 67960637 | | 20507 | 0 | 13869 | 34376 |
S/G/Y/R/B/O |
NT_029419 | AC005294 | 68146392 | 3 | chr12 | NT_029419 | AC007458 | 68258993 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_029419 | AC007458 | 68258993 | 3 | chr12 | NT_029419 | AC022511 | 68450022 | 3 | 0 | 0 | 4889 | 4889 |
S/G/Y/R/B/O |
NT_029419 | AC022511 | 68450022 | 3 | chr12 | NT_029419 | AC008033 | 68578271 | 3 | 0 | 0 | 213 | 213 |
S/G/Y/R/B/O |
NT_029419 | AC008033 | 68578271 | 3 | chr12 | NT_029419 | AC015550 | 68727238 | 3 | 0 | 0 | 232 | 232 |
S/G/Y/R/B/O |
NT_029419 | AC015550 | 68727238 | 3 | chr12 | NT_029419 | AC090061 | 68865298 | 3 | 0 | 1991 | 0 | 1991 |
S/G/Y/R/B/O |
NT_029419 | AC015550 | 68727238 | 3 |   |   | AC008651 | 68578271 | | 17883 | 0 | 0 | 17883 |
S/G/Y/R/B/O |
NT_029419 | AC090061 | 68865298 | 3 | chr12 | NT_029419 | AC124890 | 68886708 | 3 | 2028 | 0 | 0 | 2028 |
S/G/Y/R/B/O |
NT_029419 | AC090061 | 68865298 | 3 |   |   | AC008651 | 68865298 | | 23378 | 0 | 0 | 23378 |
S/G/Y/R/B/O |
NT_029419 | AC090061 | 68865298 | 3 |   |   | AC008651 | 68865298 | | 23378 | 0 | 0 | 23378 |
S/G/Y/R/B/O |
NT_029419 | AC124890 | 68886708 | 3 | chr12 | NT_029419 | AC078861 | 68995692 | 1 | 26291 | 6432 | 17258 | 49981 |
S/G/Y/R/B/O |
NT_029419 | AC078861 | 68995692 | 1 | chr12 | NT_029419 | AC025423 | 69065118 | 3 | 24787 | 2695 | 12392 | 39874 |
S/G/Y/R/B/O |
NT_029419 | AC078861 | 68995692 | 1 |   |   | AC026121 | 69065118 | | 24804 | 2695 | 10047 | 37546 |
S/G/Y/R/B/O |
NT_029419 | AC025423 | 69065118 | 3 | chr12 | NT_029419 | AC133749 | 69215697 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_029419 | AC025423 | 69065118 | 3 | chr12 | NT_029419 | AC025714 | 69312459 | 1 | 31083 | 8792 | 12117 | 51992 |
S/G/Y/R/B/O |
NT_029419 | AC025423 | 69065118 | 3 |   |   | AC016258 | 68886708 | | 61271 | 0 | 28382 | 89653 |
S/G/Y/R/B/O |
NT_029419 | AC133749 | 69215697 | 3 | chr12 | NT_029419 | AC025714 | 69312459 | 1 | 34442 | 1893 | 14733 | 51068 |
S/G/Y/R/B/O |
NT_029419 | AC025714 | 69312459 | 1 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_029419 | AC025714 | 69312459 | 1 | chr12 | NT_029419 | AC025423 | 69065118 | 3 | 31083 | 8792 | 12117 | 51992 |
S/G/Y/R/B/O |
NT_029419 | AC025714 | 69312459 | 1 |   |   | AC016258 | 69312459 | | 21154 | 7129 | 17035 | 45318 |
S/G/Y/R/B/O |
NT_029419 | AC025714 | 69312459 | 1 |   |   | AC026121 | 69065118 | | 22979 | 7200 | 19156 | 49335 |
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