Chromosome 12 - Clone Overlaps

Chromosome 12 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037806	NT_009759	NT_033253	NT_009731	NT_035206	NT_024397	NT_009714	NT_035211
NT_009700	NT_035212	NT_033254	NT_033255	NT_024371	NT_024380	NT_024352	NT_009781
NT_009526	NT_026397	NT_024417	NT_009782	NT_009609	NT_030118	NT_009458	NT_009509
NT_009441	NT_009711	NT_035222	NT_009616	NT_029419	NT_009540	NT_009528	NT_024381
NT_024460	NT_024375	NT_015310	NT_009551	NT_019546	NT_024356	NT_009538	NT_025864
NT_037807	NT_030122	NT_019555	NT_009513	NT_009575	NT_009681	NT_009743	NT_037808
NT_035235	NT_009770	NT_009775	NT_037809	NT_037810	NT_009487	NT_009438	NT_009464
NT_033248	NT_037811	NT_009755	NT_009534	NT_024376	NT_009523	NT_035242	NT_009482
NT_035243	NT_027131	NT_024477	NT_009455

NT_009458

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_009458	AC073611	53758671	1	chr12	NT_009458	AC068889	53849988	1	7094	0	62368	69462
S/G/Y/R/B/O	NT_009458	AC073611	53758671	1			AC021103	53203840		70554	9082	32986	112622
S/G/Y/R/B/O	NT_009458	AC068889	53849988	1	chr12	NT_009458	AC023509	53956330	3	111162	0	0	111162
S/G/Y/R/B/O	NT_009458	AC068889	53849988	1			AC021103	53849988		23433	7123	19250	49806
S/G/Y/R/B/O	NT_009458	AC023509	53956330	3	chr12	NT_009458	AC073594	54128888	3	0	2014	0	2014
S/G/Y/R/B/O	NT_009458	AC023509	53956330	3			AC068986	53849988		21606	0	0	21606
S/G/Y/R/B/O	NT_009458	AC073594	54128888	3	chr12	NT_009458	AC076968	54206284	3	2000	0	0	2000
S/G/Y/R/B/O	NT_009458	AC073594	54128888	3			AC010892	53758671		23124	0	3167	26291
S/G/Y/R/B/O	NT_009458	AC073594	54128888	3			AC010892	53758671		23124	0	3167	26291
S/G/Y/R/B/O	NT_009458	AC076968	54206284	3	chr12	NT_009458	AC012531	54409322	3	0	0	40423	40423
S/G/Y/R/B/O	NT_009458	AC076968	54206284	3			AC010892	54206284		15857	0	0	15857
S/G/Y/R/B/O	NT_009458	AC076968	54206284	3			AC016458	54409322		147917	6387	0	154304
S/G/Y/R/B/O	NT_009458	AC076968	54206284	3			AC068986	54409322		43677	0	0	43677
S/G/Y/R/B/O	NT_009458	AC012531	54409322	3	chr12	NT_009458	AC023794	54540464	1	18504	0	0	18504
S/G/Y/R/B/O	NT_009458	AC012531	54409322	3			AC016458	54128888		29404	2608	0	32012
S/G/Y/R/B/O	NT_009458	AC023794	54540464	1	chr12	NT_009458	AC078778	54736122	3	5547	0	0	5547
S/G/Y/R/B/O	NT_009458	AC023794	54540464	1			AC025507	54409322		91362	11013	23674	126049
S/G/Y/R/B/O	NT_009458	AC078778	54736122	3	chr12	NT_009458	AC079313	54877125	3	2002	0	0	2002
S/G/Y/R/B/O	NT_009458	AC078778	54736122	3			AC025507	54540464		19244	0	7467	26711
S/G/Y/R/B/O	NT_009458	AC079313	54877125	3	chr12	NT_009458	AC025570	55035352	3	62039	0	0	62039
S/G/Y/R/B/O	NT_009458	AC079313	54877125	3			AC053540	55035352		61896	6238	35940	104074
S/G/Y/R/B/O	NT_009458	AC025570	55035352	3	chr12	NT_009458	AC068789	55037354	3	2002	0	0	2002
S/G/Y/R/B/O	NT_009458	AC025570	55035352	3			AC053540	54736122		36071	4607	17029	57707
S/G/Y/R/B/O	NT_009458	AC068789	55037354	3	chr12	NT_009458	AC079310	55069502	3	0	0	196	196
S/G/Y/R/B/O	NT_009458	AC068789	55037354	3			AC053540	55035352		21642	3069	8600	33311
S/G/Y/R/B/O	NT_009458	AC079310	55069502	3	chr12	NT_009458	AC019223	55250377	1	0	0	0	0
S/G/Y/R/B/O	NT_009458	AC079310	55069502	3	chr12	NT_009458	AC025686	56268966	1	66919	0	11905	78824
S/G/Y/R/B/O	NT_009458	AC079310	55069502	3			AC053540	56268966		17884	4140	16786	38810
S/G/Y/R/B/O	NT_009458	AC019223	55250377	1	chr12	NT_009458	AC117496	55252575	3	45262	0	0	45262
S/G/Y/R/B/O	NT_009458	AC019223	55250377	1	chr12	NT_009458	AC079842	55323998	3	51207	0	1498	52705
S/G/Y/R/B/O	NT_009458	AC117496	55252575	3	chr12	NT_009458	AC079842	55323998	3	2002	0	0	2002
S/G/Y/R/B/O	NT_009458	AC117496	55252575	3			AC024091	55250377		14816	0	2109	16925
S/G/Y/R/B/O	NT_009458	AC079842	55323998	3	chr12	NT_009458	AC027287	55456998	3	4658	0	0	4658
S/G/Y/R/B/O	NT_009458	AC079842	55323998	3	chr12	NT_009458	AC019223	55250377	1	51207	0	1498	52705
S/G/Y/R/B/O	NT_009458	AC027287	55456998	3	chr12	NT_009458	AC090048	55655043	3	0	1998	0	1998
S/G/Y/R/B/O	NT_009458	AC027287	55456998	3			AC022207	55252575		93821	0	19047	112868
S/G/Y/R/B/O	NT_009458	AC027287	55456998	3			AC024091	55252575		61019	0	0	61019
S/G/Y/R/B/O	NT_009458	AC090048	55655043	3	chr12	NT_009458	AC122684	55702201	3	0	0	0	0
S/G/Y/R/B/O	NT_009458	AC122684	55702201	3	chr12	NT_009458	AC125816	55805164	3	0	0	0	0
S/G/Y/R/B/O	NT_009458	AC125816	55805164	3	chr12	NT_009458	AC122685	55909304	3	0	0	0	0
S/G/Y/R/B/O	NT_009458	AC122685	55909304	3	chr12	NT_009458	AC009779	56013976	3	0	0	0	0
S/G/Y/R/B/O	NT_009458	AC009779	56013976	3	chr12	NT_009458	AC073487	56204521	3	0	0	1765	1765
S/G/Y/R/B/O	NT_009458	AC009779	56013976	3			AC090678	56204521		10762	1985	2471	15218
S/G/Y/R/B/O	NT_009458	AC073487	56204521	3	chr12	NT_009458	AC023055	56257179	1	27410	0	0	27410
S/G/Y/R/B/O	NT_009458	AC073487	56204521	3			AC090678	56257179		13768	2524	3768	20060
S/G/Y/R/B/O	NT_009458	AC023055	56257179	1	chr12	NT_009458	AC025686	56268966	1	0	0	0	0
S/G/Y/R/B/O	NT_009458	AC023055	56257179	1			AC025162	56013976		14475	0	0	14475
S/G/Y/R/B/O	NT_009458	AC023055	56257179	1			AC090678	56204521		29193	6636	17150	52979
S/G/Y/R/B/O	NT_009458	AC025686	56268966	1	chr12	NT_009458	AC027529	56363709	1	0	0	0	0
S/G/Y/R/B/O	NT_009458	AC025686	56268966	1	chr12	NT_009458	AC079310	55069502	3	66919	0	11905	78824
S/G/Y/R/B/O	NT_009458	AC027529	56363709	1	chr12	NT_009458	AC023500	56476454	1	0	0	0	0
S/G/Y/R/B/O	NT_009458	AC027529	56363709	1	chr12	NT_009458	AC034102	56744074	1	41543	13238	10292	65073
S/G/Y/R/B/O	NT_009458	AC027529	56363709	1			AC025162	56257179		66102	15442	12458	94002
S/G/Y/R/B/O	NT_009458	AC023500	56476454	1	chr12	NT_009458	AC025574	56480724	1	9285	3290	14910	27485
S/G/Y/R/B/O	NT_009458	AC023500	56476454	1	chr12	NT_009458	AC034102	56744074	1	16925	0	0	16925
S/G/Y/R/B/O	NT_009458	AC023500	56476454	1	chr12	NT_009458	AC073896	56569587	3	39734	0	102155	141889
S/G/Y/R/B/O	NT_009458	AC025574	56480724	1	chr12	NT_009458	AC073896	56569587	3	19506	2805	6236	28547
S/G/Y/R/B/O	NT_009458	AC025574	56480724	1	chr12	NT_009458	AC024884	57008403	3	15586	0	0	15586
S/G/Y/R/B/O	NT_009458	AC025574	56480724	1	chr12	NT_009458	AC024884	57008403	3	15586	0	0	15586
S/G/Y/R/B/O	NT_009458	AC073896	56569587	3	chr12	NT_009458	AC034102	56744074	1	16930	0	0	16930
S/G/Y/R/B/O	NT_009458	AC073896	56569587	3	chr12	NT_009458	AC023500	56476454	1	39734	0	102155	141889
S/G/Y/R/B/O	NT_009458	AC034102	56744074	1	chr12	NT_009458	AC024884	57008403	3	0	0	0	0
S/G/Y/R/B/O	NT_009458	AC034102	56744074	1	chr12	NT_009458	AC023500	56476454	1	16925	0	0	16925
S/G/Y/R/B/O	NT_009458	AC034102	56744074	1	chr12	NT_009458	AC027529	56363709	1	41543	13238	10292	65073
S/G/Y/R/B/O	NT_009458	AC034102	56744074	1			AC025162	56476454		83857	0	4477	88334
S/G/Y/R/B/O	NT_009458	AC024884	57008403	3	chr12	NT_009458	AC097104	57083717	3	0	0	1884	1884
S/G/Y/R/B/O	NT_009458	AC024884	57008403	3	chr12	NT_009458	AC025574	56480724	1	15586	0	0	15586
S/G/Y/R/B/O	NT_009458	AC024884	57008403	3	chr12	NT_009458	AC025574	56480724	1	15586	0	0	15586
S/G/Y/R/B/O	NT_009458	AC097104	57083717	3	chr12	NT_009458	AC090681	57188053	3	2004	0	0	2004
S/G/Y/R/B/O	NT_009458	AC097104	57083717	3			AC027473	57008403		49785	0	21180	70965
S/G/Y/R/B/O	NT_009458	AC097104	57083717	3			AC027473	57008403		49785	0	21180	70965
S/G/Y/R/B/O	NT_009458	AC097104	57083717	3			AC073620	57008403		18438	0	31210	49648
S/G/Y/R/B/O	NT_009458	AC097104	57083717	3			AC073620	57008403		18438	0	31210	49648
S/G/Y/R/B/O	NT_009458	AC097104	57083717	3			AC117371	57188053		27915	0	27769	55684
S/G/Y/R/B/O	NT_009458	AC097104	57083717	3			AC117371	57188053		27915	0	27769	55684
S/G/Y/R/B/O	NT_009458	AC090681	57188053	3	chr12	NT_009458	AC117378	57281635	3	0	1999	0	1999
S/G/Y/R/B/O	NT_009458	AC090681	57188053	3			AC027473	57188053		23290	0	0	23290
S/G/Y/R/B/O	NT_009458	AC090681	57188053	3			AC073620	57188053		80507	2092	1752	84351
S/G/Y/R/B/O	NT_009458	AC090681	57188053	3			AC117371	57083717		23252	0	0	23252
S/G/Y/R/B/O	NT_009458	AC117378	57281635	3	chr12	NT_009458	AC121758	57390092	3	0	0	1781	1781
S/G/Y/R/B/O	NT_009458	AC121758	57390092	3	chr12	NT_009458	AC026120	57518567	3	0	0	1808	1808
S/G/Y/R/B/O	NT_009458	AC026120	57518567	3	chr12	NT_009458	AC023237	57688564	3	0	1941	0	1941
S/G/Y/R/B/O	NT_009458	AC026120	57518567	3	chr12	NT_009458	AC023497	57764923	1	143803	0	0	143803
S/G/Y/R/B/O	NT_009458	AC026120	57518567	3			AC018673	57281635		132526	0	0	132526
S/G/Y/R/B/O	NT_009458	AC026120	57518567	3			AC022512	57281635		17977	12156	14092	44225
S/G/Y/R/B/O	NT_009458	AC026120	57518567	3			AC023499	57764923		26195	0	37519	63714
S/G/Y/R/B/O	NT_009458	AC026120	57518567	3			AL583823	57390092		72856	0	0	72856
S/G/Y/R/B/O	NT_009458	AC023237	57688564	3	chr12	NT_009458	AC023497	57764923	1	0	0	13322	13322
S/G/Y/R/B/O	NT_009458	AC023237	57688564	3			AC018673	57390092		56390	0	0	56390
S/G/Y/R/B/O	NT_009458	AC023237	57688564	3			AC023499	57764923		37408	4536	8343	50287
S/G/Y/R/B/O	NT_009458	AC023237	57688564	3			AL583823	57518567		34340	2359	9425	46124
S/G/Y/R/B/O	NT_009458	AC023497	57764923	1
S/G/Y/R/B/O	NT_009458	AC023497	57764923	1	chr12	NT_009458	AC026120	57518567	3	143803	0	0	143803
S/G/Y/R/B/O	NT_009458	AC023497	57764923	1			AC018673	57518567		47157	0	96018	143175
S/G/Y/R/B/O	NT_009458	AC023497	57764923	1			AC022512	57518567		15721	17972	19778	53471
S/G/Y/R/B/O	NT_009458	AC023497	57764923	1			AC023499	57688564		55029	0	43614	98643
S/G/Y/R/B/O	NT_009458	AC023497	57764923	1			AL583823	57518567		102429	2361	9709	114499