|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_009711 | AC020647 | 62249027 | 3 | chr12 | NT_009711 | AC130414 | 62396747 | 3 | 0 | 0 | 38087 | 38087 |
S/G/Y/R/B/O |
NT_009711 | AC020647 | 62249027 | 3 |   |   | AC079850 | 61959499 | | 21002 | 12583 | 37135 | 70720 |
S/G/Y/R/B/O |
NT_009711 | AC130414 | 62396747 | 3 | chr12 | NT_009711 | AC078872 | 62403656 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009711 | AC130414 | 62396747 | 3 |   |   | AC013638 | 62396747 | | 43471 | 0 | 3981 | 47452 |
S/G/Y/R/B/O |
NT_009711 | AC130414 | 62396747 | 3 |   |   | AC013638 | 62396747 | | 43471 | 0 | 3981 | 47452 |
S/G/Y/R/B/O |
NT_009711 | AC078872 | 62403656 | 3 | chr12 | NT_009711 | AC078789 | 62570241 | 3 | 79632 | 0 | 0 | 79632 |
S/G/Y/R/B/O |
NT_009711 | AC078872 | 62403656 | 3 |   |   | AC013638 | 62403656 | | 123061 | 0 | 6446 | 129507 |
S/G/Y/R/B/O |
NT_009711 | AC078872 | 62403656 | 3 |   |   | AC016169 | 62403656 | | 75742 | 0 | 34946 | 110688 |
S/G/Y/R/B/O |
NT_009711 | AC078872 | 62403656 | 3 |   |   | AC090439 | 62570241 | | 42751 | 0 | 0 | 42751 |
S/G/Y/R/B/O |
NT_009711 | AC078789 | 62570241 | 3 | chr12 | NT_009711 | AC117370 | 62688162 | 1 | 2750 | 0 | 49593 | 52343 |
S/G/Y/R/B/O |
NT_009711 | AC078789 | 62570241 | 3 |   |   | AC013638 | 62396747 | | 35755 | 0 | 6446 | 42201 |
S/G/Y/R/B/O |
NT_009711 | AC078789 | 62570241 | 3 |   |   | AC016169 | 62396747 | | 69448 | 2412 | 34946 | 106806 |
S/G/Y/R/B/O |
NT_009711 | AC078789 | 62570241 | 3 |   |   | AC090439 | 62403656 | | 73638 | 0 | 0 | 73638 |
S/G/Y/R/B/O |
NT_009711 | AC117370 | 62688162 | 1 | chr12 | NT_009711 | AC048342 | 62712063 | 3 | 35995 | 0 | 0 | 35995 |
S/G/Y/R/B/O |
NT_009711 | AC117370 | 62688162 | 1 |   |   | AC018658 | 62688162 | | 58572 | 0 | 0 | 58572 |
S/G/Y/R/B/O |
NT_009711 | AC117370 | 62688162 | 1 |   |   | AC025077 | 62688162 | | 71770 | 9786 | 21082 | 102638 |
S/G/Y/R/B/O |
NT_009711 | AC048342 | 62712063 | 3 | chr12 | NT_009711 | AC079035 | 62748058 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009711 | AC048342 | 62712063 | 3 |   |   | AC018658 | 183579227 | | 35995 | 0 | 0 | 35995 |
S/G/Y/R/B/O |
NT_009711 | AC048342 | 62712063 | 3 |   |   | AC025077 | 183579227 | | 11704 | 2587 | 9673 | 23964 |
S/G/Y/R/B/O |
NT_009711 | AC079035 | 62748058 | 3 | chr12 | NT_009711 | AC026115 | 62950725 | 3 | 0 | 2015 | 0 | 2015 |
S/G/Y/R/B/O |
NT_009711 | AC079035 | 62748058 | 3 |   |   | AC025077 | 62688162 | | 12873 | 0 | 6004 | 18877 |
S/G/Y/R/B/O |
NT_009711 | AC079035 | 62748058 | 3 |   |   | AC025838 | 62688162 | | 99102 | 8856 | 8018 | 115976 |
S/G/Y/R/B/O |
NT_009711 | AC026115 | 62950725 | 3 | chr12 | NT_009711 | AC048341 | 63048255 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_009711 | AC026115 | 62950725 | 3 |   |   | AC025658 | 62950725 | | 20719 | 1073 | 0 | 21792 |
S/G/Y/R/B/O |
NT_009711 | AC048341 | 63048255 | 3 | chr12 | NT_009711 | AC025264 | 63113653 | 3 | 0 | 0 | 1780 | 1780 |
S/G/Y/R/B/O |
NT_009711 | AC048341 | 63048255 | 3 |   |   | AC025658 | 63113653 | | 48933 | 7860 | 6441 | 63234 |
S/G/Y/R/B/O |
NT_009711 | AC048341 | 63048255 | 3 |   |   | AC079158 | 62950725 | | 25280 | 0 | 3361 | 28641 |
S/G/Y/R/B/O |
NT_009711 | AC025264 | 63113653 | 3 | chr12 | NT_009711 | AC023359 | 63305196 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_009711 | AC025264 | 63113653 | 3 |   |   | AC025658 | 63305196 | | 70278 | 5506 | 3842 | 79626 |
S/G/Y/R/B/O |
NT_009711 | AC025264 | 63113653 | 3 |   |   | AC026677 | 63305196 | | 57715 | 5307 | 81475 | 144497 |
S/G/Y/R/B/O |
NT_009711 | AC025264 | 63113653 | 3 |   |   | AC036197 | 63305196 | | 171790 | 0 | 0 | 171790 |
S/G/Y/R/B/O |
NT_009711 | AC025264 | 63113653 | 3 |   |   | AC079158 | 63048255 | | 98438 | 0 | 3195 | 101633 |
S/G/Y/R/B/O |
NT_009711 | AC023359 | 63305196 | 3 | chr12 | NT_009711 | AC078814 | 63345917 | 3 | 0 | 1992 | 0 | 1992 |
S/G/Y/R/B/O |
NT_009711 | AC023359 | 63305196 | 3 |   |   | AC017029 | 63048255 | | 30071 | 498 | 0 | 30569 |
S/G/Y/R/B/O |
NT_009711 | AC023359 | 63305196 | 3 |   |   | AC026104 | 63113653 | | 26540 | 0 | 6461 | 33001 |
S/G/Y/R/B/O |
NT_009711 | AC023359 | 63305196 | 3 |   |   | AC036197 | 63113653 | | 38466 | 0 | 0 | 38466 |
S/G/Y/R/B/O |
NT_009711 | AC078814 | 63345917 | 3 | chr12 | NT_009711 | AC025525 | 63535386 | 1 | 48897 | 1795 | 0 | 50692 |
S/G/Y/R/B/O |
NT_009711 | AC078814 | 63345917 | 3 |   |   | AC017029 | 63345917 | | 81049 | 1294 | 0 | 82343 |
S/G/Y/R/B/O |
NT_009711 | AC078814 | 63345917 | 3 |   |   | AC026104 | 63535386 | | 49522 | 4237 | 39161 | 92920 |
S/G/Y/R/B/O |
NT_009711 | AC078814 | 63345917 | 3 |   |   | AC135584 | 63535386 | | 48252 | 2150 | 0 | 50402 |
S/G/Y/R/B/O |
NT_009711 | AC025525 | 63535386 | 1 | chr12 | NT_009711 | AC026116 | 63623651 | 3 | 30875 | 2755 | 0 | 33630 |
S/G/Y/R/B/O |
NT_009711 | AC025525 | 63535386 | 1 |   |   | AC135584 | 63345917 | | 102790 | 7106 | 9239 | 119135 |
S/G/Y/R/B/O |
NT_009711 | AC026116 | 63623651 | 3 | chr12 | NT_009711 | AC079263 | 63800918 | 3 | 0 | 0 | 199 | 199 |
S/G/Y/R/B/O |
NT_009711 | AC026116 | 63623651 | 3 |   |   | AC020609 | 63345917 | | 60798 | 0 | 2069 | 62867 |
S/G/Y/R/B/O |
NT_009711 | AC026116 | 63623651 | 3 |   |   | AC078827 | 63535386 | | 33060 | 0 | 4518 | 37578 |
S/G/Y/R/B/O |
NT_009711 | AC026116 | 63623651 | 3 |   |   | AC135584 | 63800918 | | 10934 | 0 | 0 | 10934 |
S/G/Y/R/B/O |
NT_009711 | AC079263 | 63800918 | 3 | chr12 | NT_009711 | AC027667 | 63964619 | 3 | 2046 | 0 | 0 | 2046 |
S/G/Y/R/B/O |
NT_009711 | AC079263 | 63800918 | 3 |   |   | AC020609 | 63800918 | | 29365 | 0 | 0 | 29365 |
S/G/Y/R/B/O |
NT_009711 | AC079263 | 63800918 | 3 |   |   | AC053489 | 63964619 | | 38791 | 0 | 39991 | 78782 |
S/G/Y/R/B/O |
NT_009711 | AC079263 | 63800918 | 3 |   |   | AC068778 | 63964619 | | 23451 | 2135 | 7494 | 33080 |
S/G/Y/R/B/O |
NT_009711 | AC079263 | 63800918 | 3 |   |   | AC078827 | 63964619 | | 63632 | 0 | 0 | 63632 |
S/G/Y/R/B/O |
NT_009711 | AC027667 | 63964619 | 3 | chr12 | NT_009711 | AC084357 | 64120374 | 3 | 2048 | 0 | 0 | 2048 |
S/G/Y/R/B/O |
NT_009711 | AC027667 | 63964619 | 3 |   |   | AC026105 | 63964619 | | 22428 | 0 | 17202 | 39630 |
S/G/Y/R/B/O |
NT_009711 | AC027667 | 63964619 | 3 |   |   | AC053489 | 63964619 | | 19397 | 0 | 4815 | 24212 |
S/G/Y/R/B/O |
NT_009711 | AC027667 | 63964619 | 3 |   |   | AC055122 | 63964619 | | 45161 | 3724 | 1699 | 50584 |
S/G/Y/R/B/O |
NT_009711 | AC027667 | 63964619 | 3 |   |   | AC092972 | 64120374 | | 22212 | 2076 | 35777 | 60065 |
S/G/Y/R/B/O |
NT_009711 | AC084357 | 64120374 | 3 | chr12 | NT_009711 | AC079866 | 64306853 | 1 | 10758 | 1934 | 4111 | 16803 |
S/G/Y/R/B/O |
NT_009711 | AC084357 | 64120374 | 3 |   |   | AC092972 | 64306853 | | 12122 | 0 | 30797 | 42919 |
S/G/Y/R/B/O |
NT_009711 | AC084357 | 64120374 | 3 |   |   | AL451067 | 64306853 | | 45333 | 2902 | 50364 | 98599 |
S/G/Y/R/B/O |
NT_009711 | AC079866 | 64306853 | 1 | chr12 | NT_009711 | AC020611 | 64363265 | 3 | 33367 | 0 | 23955 | 57322 |
S/G/Y/R/B/O |
NT_009711 | AC020611 | 64363265 | 3 | chr12 | NT_009711 | AC025576 | 64552237 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_009711 | AC020611 | 64363265 | 3 |   |   | AC026114 | 64552237 | | 51989 | 0 | 6850 | 58839 |
S/G/Y/R/B/O |
NT_009711 | AC025576 | 64552237 | 3 | chr12 | NT_009711 | AC012158 | 64643613 | 3 | 0 | 1976 | 0 | 1976 |
S/G/Y/R/B/O |
NT_009711 | AC025576 | 64552237 | 3 |   |   | AC026114 | 64363265 | | 43598 | 1989 | 17499 | 63086 |
S/G/Y/R/B/O |
NT_009711 | AC025576 | 64552237 | 3 |   |   | AC055724 | 64363265 | | 27385 | 1251 | 16044 | 44680 |
S/G/Y/R/B/O |
NT_009711 | AC012158 | 64643613 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_009711 | AC012158 | 64643613 | 3 |   |   | AC026114 | 64552237 | | 15757 | 0 | 0 | 15757 |
S/G/Y/R/B/O |
NT_009711 | AC012158 | 64643613 | 3 |   |   | AC055724 | 64552237 | | 38312 | 0 | 7355 | 45667 |
| |
|
|
|