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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_009609 | AC046135 | 51660528 | 3 | chr12 | NT_009609 | AC107031 | 51836361 | 3 | 10398 | 0 | 0 | 10398 |
S/G/Y/R/B/O |
NT_009609 | AC046135 | 51660528 | 3 |   |   | AC010188 | 51451308 | | 158588 | 0 | 0 | 158588 |
S/G/Y/R/B/O |
NT_009609 | AC046135 | 51660528 | 3 |   |   | AC027750 | 51451308 | | 41655 | 0 | 5563 | 47218 |
S/G/Y/R/B/O |
NT_009609 | AC046135 | 51660528 | 3 |   |   | AC068297 | 51451308 | | 27648 | 0 | 102961 | 130609 |
S/G/Y/R/B/O |
NT_009609 | AC107031 | 51836361 | 3 | chr12 | NT_009609 | AC025097 | 51910502 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_009609 | AC107031 | 51836361 | 3 |   |   | AC027750 | 51910502 | | 54997 | 5388 | 15001 | 75386 |
S/G/Y/R/B/O |
NT_009609 | AC107031 | 51836361 | 3 |   |   | AC068297 | 51660528 | | 14040 | 0 | 0 | 14040 |
S/G/Y/R/B/O |
NT_009609 | AC025097 | 51910502 | 3 | chr12 | NT_009609 | AC027582 | 52112037 | 1 | 22539 | 0 | 20286 | 42825 |
S/G/Y/R/B/O |
NT_009609 | AC025097 | 51910502 | 3 |   |   | AC023053 | 51660528 | | 21752 | 5021 | 22204 | 48977 |
S/G/Y/R/B/O |
NT_009609 | AC025097 | 51910502 | 3 |   |   | AC027750 | 52112037 | | 32487 | 1625 | 12239 | 46351 |
S/G/Y/R/B/O |
NT_009609 | AC027582 | 52112037 | 1 | chr12 | NT_009609 | AC013758 | 52136492 | 1 | 18792 | 1289 | 0 | 20081 |
S/G/Y/R/B/O |
NT_009609 | AC027582 | 52112037 | 1 |   |   | AC023053 | 52136492 | | 44427 | 10824 | 27707 | 82958 |
S/G/Y/R/B/O |
NT_009609 | AC013758 | 52136492 | 1 | chr12 | NT_009609 | AC013421 | 52178268 | 3 | 24684 | 0 | 0 | 24684 |
S/G/Y/R/B/O |
NT_009609 | AC013758 | 52136492 | 1 | chr12 | NT_009609 | AC068987 | 52225734 | 3 | 21693 | 2253 | 0 | 23946 |
S/G/Y/R/B/O |
NT_009609 | AC013758 | 52136492 | 1 |   |   | AC023053 | 52178268 | | 16259 | 0 | 0 | 16259 |
S/G/Y/R/B/O |
NT_009609 | AC013758 | 52136492 | 1 |   |   | AC027260 | 52178268 | | 25823 | 6982 | 0 | 32805 |
S/G/Y/R/B/O |
NT_009609 | AC013421 | 52178268 | 3 | chr12 | NT_009609 | AC068987 | 52225734 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009609 | AC068987 | 52225734 | 3 | chr12 | NT_009609 | AC025259 | 52299393 | 3 | 2779 | 0 | 0 | 2779 |
S/G/Y/R/B/O |
NT_009609 | AC068987 | 52225734 | 3 | chr12 | NT_009609 | AC013758 | 52136492 | 1 | 21693 | 2253 | 0 | 23946 |
S/G/Y/R/B/O |
NT_009609 | AC068987 | 52225734 | 3 |   |   | AC027260 | 52299393 | | 48016 | 3864 | 0 | 51880 |
S/G/Y/R/B/O |
NT_009609 | AC025259 | 52299393 | 3 | chr12 | NT_009609 | AC078864 | 52506768 | 1 | 52117 | 0 | 22774 | 74891 |
S/G/Y/R/B/O |
NT_009609 | AC025259 | 52299393 | 3 |   |   | AC019244 | 52299393 | | 83813 | 2050 | 56469 | 142332 |
S/G/Y/R/B/O |
NT_009609 | AC025259 | 52299393 | 3 |   |   | AC027260 | 52299393 | | 74554 | 0 | 12347 | 86901 |
S/G/Y/R/B/O |
NT_009609 | AC025259 | 52299393 | 3 |   |   | AC080174 | 52506768 | | 27340 | 0 | 0 | 27340 |
S/G/Y/R/B/O |
NT_009609 | AC078864 | 52506768 | 1 | chr12 | NT_009609 | AC021066 | 52548146 | 3 | 23638 | 0 | 0 | 23638 |
S/G/Y/R/B/O |
NT_009609 | AC078864 | 52506768 | 1 |   |   | AC019244 | 52506768 | | 64857 | 2026 | 8231 | 75114 |
S/G/Y/R/B/O |
NT_009609 | AC078864 | 52506768 | 1 |   |   | AC080174 | 52299393 | | 39814 | 0 | 20018 | 59832 |
S/G/Y/R/B/O |
NT_009609 | AC021066 | 52548146 | 3 | chr12 | NT_009609 | AC121757 | 52706431 | 1 | 12983 | 0 | 54339 | 67322 |
S/G/Y/R/B/O |
NT_009609 | AC021066 | 52548146 | 3 |   |   | AC007101 | 52299393 | | 12058 | 0 | 21258 | 33316 |
S/G/Y/R/B/O |
NT_009609 | AC021066 | 52548146 | 3 |   |   | AC080174 | 52506768 | | 90678 | 4342 | 0 | 95020 |
S/G/Y/R/B/O |
NT_009609 | AC021066 | 52548146 | 3 |   |   | AP002519 | 52706431 | | 39726 | 0 | 1220 | 40946 |
S/G/Y/R/B/O |
NT_009609 | AC121757 | 52706431 | 1 | chr12 | NT_009609 | AC078865 | 52768141 | 3 | 0 | 0 | 31534 | 31534 |
S/G/Y/R/B/O |
NT_009609 | AC121757 | 52706431 | 1 |   |   | AC007101 | 52706431 | | 38434 | 4202 | 21258 | 63894 |
S/G/Y/R/B/O |
NT_009609 | AC121757 | 52706431 | 1 |   |   | AC080174 | 52768141 | | 10312 | 0 | 0 | 10312 |
S/G/Y/R/B/O |
NT_009609 | AC121757 | 52706431 | 1 |   |   | AP002519 | 52768141 | | 69525 | 2621 | 45799 | 117945 |
S/G/Y/R/B/O |
NT_009609 | AC078865 | 52768141 | 3 | chr12 | NT_009609 | AC055736 | 52837371 | 3 | 0 | 0 | 253 | 253 |
S/G/Y/R/B/O |
NT_009609 | AC078865 | 52768141 | 3 |   |   | AC027562 | 52768141 | | 61168 | 0 | 2763 | 63931 |
S/G/Y/R/B/O |
NT_009609 | AC078865 | 52768141 | 3 |   |   | AC130491 | 52706431 | | 64446 | 0 | 0 | 64446 |
S/G/Y/R/B/O |
NT_009609 | AC078865 | 52768141 | 3 |   |   | AP002519 | 52706431 | | 64150 | 0 | 1633 | 65783 |
S/G/Y/R/B/O |
NT_009609 | AC055736 | 52837371 | 3 | chr12 | NT_009609 | AC055715 | 52988020 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009609 | AC055736 | 52837371 | 3 |   |   | AC027562 | 52706431 | | 47711 | 0 | 15302 | 63013 |
S/G/Y/R/B/O |
NT_009609 | AC055736 | 52837371 | 3 |   |   | AC130491 | 52768141 | | 11993 | 0 | 0 | 11993 |
S/G/Y/R/B/O |
NT_009609 | AC055715 | 52988020 | 3 | chr12 | NT_009609 | AC055716 | 53074620 | 3 | 2034 | 0 | 0 | 2034 |
S/G/Y/R/B/O |
NT_009609 | AC055715 | 52988020 | 3 |   |   | AC024196 | 52768141 | | 45549 | 0 | 39847 | 85396 |
S/G/Y/R/B/O |
NT_009609 | AC055716 | 53074620 | 3 | chr12 | NT_009609 | AC068988 | 53183404 | 3 | 2003 | 0 | 0 | 2003 |
S/G/Y/R/B/O |
NT_009609 | AC055716 | 53074620 | 3 |   |   | AC024196 | 53074620 | | 43382 | 0 | 0 | 43382 |
S/G/Y/R/B/O |
NT_009609 | AC068988 | 53183404 | 3 |   |   |   |   |   |   |   |   |   |
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