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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_009743 | AC078916 | 100195184 | 3 | chr12 | NT_009743 | AC126474 | 100367862 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_009743 | AC078916 | 100195184 | 3 |   |   | AC010703 | 99923300 | | 171756 | 0 | 0 | 171756 |
S/G/Y/R/B/O |
NT_009743 | AC078916 | 100195184 | 3 |   |   | AC024215 | 99923300 | | 30446 | 0 | 121686 | 152132 |
S/G/Y/R/B/O |
NT_009743 | AC078916 | 100195184 | 3 |   |   | AC024708 | 99923300 | | 35015 | 2777 | 0 | 37792 |
S/G/Y/R/B/O |
NT_009743 | AC126474 | 100367862 | 3 | chr12 | NT_009743 | AC010203 | 100429802 | 3 | 0 | 2001 | 0 | 2001 |
S/G/Y/R/B/O |
NT_009743 | AC126474 | 100367862 | 3 |   |   | AC024708 | 100429802 | | 42527 | 0 | 0 | 42527 |
S/G/Y/R/B/O |
NT_009743 | AC010203 | 100429802 | 3 | chr12 | NT_009743 | AC026110 | 100595138 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_009743 | AC010203 | 100429802 | 3 |   |   | AC010204 | 100195184 | | 33287 | 0 | 0 | 33287 |
S/G/Y/R/B/O |
NT_009743 | AC026110 | 100595138 | 3 | chr12 | NT_009743 | AC126308 | 100746327 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_009743 | AC026110 | 100595138 | 3 |   |   | AC010204 | 100429802 | | 26002 | 0 | 124845 | 150847 |
S/G/Y/R/B/O |
NT_009743 | AC126308 | 100746327 | 3 | chr12 | NT_009743 | AC010200 | 100830080 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_009743 | AC126308 | 100746327 | 3 |   |   | AL157942 | 100595138 | | 51834 | 652 | 17556 | 70042 |
S/G/Y/R/B/O |
NT_009743 | AC010200 | 100830080 | 3 | chr12 | NT_009743 | AC010209 | 100985748 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009743 | AC010200 | 100830080 | 3 |   |   | AL157942 | 100746327 | | 66824 | 1427 | 0 | 68251 |
S/G/Y/R/B/O |
NT_009743 | AC010209 | 100985748 | 3 | chr12 | NT_009743 | AC127893 | 101105094 | 3 | 2003 | 0 | 0 | 2003 |
S/G/Y/R/B/O |
NT_009743 | AC127893 | 101105094 | 3 | chr12 | NT_009743 | AC060829 | 101198060 | 1 | 76856 | 0 | 13946 | 90802 |
S/G/Y/R/B/O |
NT_009743 | AC060829 | 101198060 | 1 | chr12 | NT_009743 | AC125628 | 101247344 | 3 | 30904 | 0 | 0 | 30904 |
S/G/Y/R/B/O |
NT_009743 | AC125628 | 101247344 | 3 | chr12 | NT_009743 | AC063947 | 101293685 | 3 | 2002 | 0 | 0 | 2002 |
S/G/Y/R/B/O |
NT_009743 | AC125628 | 101247344 | 3 |   |   | AC026867 | 101105094 | | 12227 | 5649 | 18277 | 36153 |
S/G/Y/R/B/O |
NT_009743 | AC063947 | 101293685 | 3 | chr12 | NT_009743 | AC079953 | 101488559 | 3 | 0 | 0 | 1863 | 1863 |
S/G/Y/R/B/O |
NT_009743 | AC063947 | 101293685 | 3 |   |   | AC023056 | 101293685 | | 87007 | 0 | 0 | 87007 |
S/G/Y/R/B/O |
NT_009743 | AC063947 | 101293685 | 3 |   |   | AC026867 | 101293685 | | 66775 | 5577 | 28145 | 100497 |
S/G/Y/R/B/O |
NT_009743 | AC063947 | 101293685 | 3 |   |   | AC027087 | 101293685 | | 40521 | 26297 | 5772 | 72590 |
S/G/Y/R/B/O |
NT_009743 | AC079953 | 101488559 | 3 | chr12 | NT_009743 | AC063951 | 101635256 | 3 | 146516 | 0 | 0 | 146516 |
S/G/Y/R/B/O |
NT_009743 | AC079953 | 101488559 | 3 |   |   | AC021053 | 101247344 | | 18199 | 0 | 0 | 18199 |
S/G/Y/R/B/O |
NT_009743 | AC079953 | 101488559 | 3 |   |   | AC023056 | 101247344 | | 57149 | 0 | 55884 | 113033 |
S/G/Y/R/B/O |
NT_009743 | AC079953 | 101488559 | 3 |   |   | AC027087 | 101247344 | | 11055 | 8977 | 3857 | 23889 |
S/G/Y/R/B/O |
NT_009743 | AC079953 | 101488559 | 3 |   |   | AC058819 | 101247344 | | 89731 | 8261 | 29089 | 127081 |
S/G/Y/R/B/O |
NT_009743 | AC063951 | 101635256 | 3 | chr12 | NT_009743 | AC063948 | 101669756 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009743 | AC063951 | 101635256 | 3 |   |   | AC021053 | 101635256 | | 52622 | 0 | 0 | 52622 |
S/G/Y/R/B/O |
NT_009743 | AC063951 | 101635256 | 3 |   |   | AC023056 | 101635256 | | 111050 | 0 | 0 | 111050 |
S/G/Y/R/B/O |
NT_009743 | AC063951 | 101635256 | 3 |   |   | AC027087 | 101635256 | | 11047 | 8967 | 3025 | 23039 |
S/G/Y/R/B/O |
NT_009743 | AC063951 | 101635256 | 3 |   |   | AC058819 | 101635256 | | 89920 | 9393 | 27646 | 126959 |
S/G/Y/R/B/O |
NT_009743 | AC063948 | 101669756 | 3 | chr12 | NT_009743 | AC093024 | 101814253 | 3 | 0 | 0 | 1723 | 1723 |
S/G/Y/R/B/O |
NT_009743 | AC063948 | 101669756 | 3 |   |   | AC021053 | 101488559 | | 54811 | 2559 | 3724 | 61094 |
S/G/Y/R/B/O |
NT_009743 | AC063948 | 101669756 | 3 |   |   | AC022290 | 101488559 | | 16333 | 2384 | 15132 | 33849 |
S/G/Y/R/B/O |
NT_009743 | AC063948 | 101669756 | 3 |   |   | AC026549 | 101488559 | | 74772 | 14021 | 18493 | 107286 |
S/G/Y/R/B/O |
NT_009743 | AC093024 | 101814253 | 3 | chr12 | NT_009743 | AC090671 | 101844642 | 3 | 0 | 2002 | 0 | 2002 |
S/G/Y/R/B/O |
NT_009743 | AC090671 | 101844642 | 3 | chr12 | NT_009743 | AC117505 | 102028935 | 3 | 2066 | 0 | 0 | 2066 |
S/G/Y/R/B/O |
NT_009743 | AC090671 | 101844642 | 3 |   |   | AC022290 | 101844642 | | 29475 | 3233 | 8981 | 41689 |
S/G/Y/R/B/O |
NT_009743 | AC090671 | 101844642 | 3 |   |   | AC026615 | 101844642 | | 118837 | 7452 | 8387 | 134676 |
S/G/Y/R/B/O |
NT_009743 | AC090671 | 101844642 | 3 |   |   | AC073833 | 101844642 | | 87407 | 2444 | 2770 | 92621 |
S/G/Y/R/B/O |
NT_009743 | AC117505 | 102028935 | 3 | chr12 | NT_009743 | AC010205 | 102051560 | 3 | 2102 | 0 | 0 | 2102 |
S/G/Y/R/B/O |
NT_009743 | AC117505 | 102028935 | 3 |   |   | AC073833 | 102051560 | | 24637 | 0 | 0 | 24637 |
S/G/Y/R/B/O |
NT_009743 | AC010205 | 102051560 | 3 | chr12 | NT_009743 | AC063950 | 102099351 | 3 | 2016 | 0 | 0 | 2016 |
S/G/Y/R/B/O |
NT_009743 | AC010205 | 102051560 | 3 |   |   | AC073833 | 102099351 | | 31203 | 1584 | 9069 | 41856 |
S/G/Y/R/B/O |
NT_009743 | AC063950 | 102099351 | 3 | chr12 | NT_009743 | AC084398 | 102271566 | 3 | 0 | 2007 | 0 | 2007 |
S/G/Y/R/B/O |
NT_009743 | AC063950 | 102099351 | 3 |   |   | AC005409 | 102028935 | | 171003 | 0 | 0 | 171003 |
S/G/Y/R/B/O |
NT_009743 | AC084398 | 102271566 | 3 | chr12 | NT_009743 | AC079907 | 102314909 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_009743 | AC079907 | 102314909 | 3 | chr12 | NT_009743 | AC087882 | 102497745 | 1 | 11387 | 1026 | 4994 | 17407 |
S/G/Y/R/B/O |
NT_009743 | AC079907 | 102314909 | 3 |   |   | AC036229 | 102314909 | | 46651 | 1651 | 0 | 48302 |
S/G/Y/R/B/O |
NT_009743 | AC087882 | 102497745 | 1 | chr12 | NT_009743 | AC093023 | 102566760 | 3 | 4068 | 0 | 0 | 4068 |
S/G/Y/R/B/O |
NT_009743 | AC087882 | 102497745 | 1 |   |   | AC036229 | 102497745 | | 24155 | 7721 | 35190 | 67066 |
S/G/Y/R/B/O |
NT_009743 | AC093023 | 102566760 | 3 | chr12 | NT_009743 | AC068648 | 102622994 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009743 | AC093023 | 102566760 | 3 |   |   | AC036229 | 102566760 | | 22393 | 0 | 0 | 22393 |
S/G/Y/R/B/O |
NT_009743 | AC068648 | 102622994 | 3 | chr12 | NT_009743 | AC010202 | 102747315 | 3 | 0 | 0 | 199 | 199 |
S/G/Y/R/B/O |
NT_009743 | AC010202 | 102747315 | 3 | chr12 | NT_009743 | AC021058 | 102917120 | 3 | 84112 | 0 | 0 | 84112 |
S/G/Y/R/B/O |
NT_009743 | AC010202 | 102747315 | 3 |   |   | AC026107 | 102917120 | | 20787 | 0 | 0 | 20787 |
S/G/Y/R/B/O |
NT_009743 | AC021058 | 102917120 | 3 | chr12 | NT_009743 | AC025577 | 103000987 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009743 | AC021058 | 102917120 | 3 |   |   | AC026107 | 102747315 | | 104562 | 0 | 0 | 104562 |
S/G/Y/R/B/O |
NT_009743 | AC025577 | 103000987 | 3 | chr12 | NT_009743 | AC079952 | 103112734 | 3 | 0 | 1231 | 0 | 1231 |
S/G/Y/R/B/O |
NT_009743 | AC079952 | 103112734 | 3 | chr12 | NT_009743 | AC069227 | 103127504 | 3 | 0 | 1228 | 0 | 1228 |
S/G/Y/R/B/O |
NT_009743 | AC079952 | 103112734 | 3 |   |   | AC073157 | 103127504 | | 16001 | 0 | 0 | 16001 |
S/G/Y/R/B/O |
NT_009743 | AC069227 | 103127504 | 3 | chr12 | NT_009743 | AC026108 | 103293673 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009743 | AC069227 | 103127504 | 3 |   |   | AC018743 | 103127504 | | 24874 | 0 | 0 | 24874 |
S/G/Y/R/B/O |
NT_009743 | AC069227 | 103127504 | 3 |   |   | AC073157 | 103127504 | | 125781 | 0 | 0 | 125781 |
S/G/Y/R/B/O |
NT_009743 | AC026108 | 103293673 | 3 | chr12 | NT_009743 | AC079903 | 103369458 | 1 | 62287 | 0 | 1458 | 63745 |
S/G/Y/R/B/O |
NT_009743 | AC026108 | 103293673 | 3 |   |   | AC018743 | 103112734 | | 29994 | 0 | 12840 | 42834 |
S/G/Y/R/B/O |
NT_009743 | AC079903 | 103369458 | 1 | chr12 | NT_009743 | AC063945 | 103376745 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009743 | AC079903 | 103369458 | 1 | chr12 | NT_009743 | AC068643 | 103467640 | 3 | 19166 | 0 | 0 | 19166 |
S/G/Y/R/B/O |
NT_009743 | AC079903 | 103369458 | 1 |   |   | AC018743 | 103369458 | | 30188 | 0 | 47727 | 77915 |
S/G/Y/R/B/O |
NT_009743 | AC063945 | 103376745 | 3 | chr12 | NT_009743 | AC068642 | 103409738 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009743 | AC068642 | 103409738 | 3 | chr12 | NT_009743 | AC068643 | 103467640 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_009743 | AC068643 | 103467640 | 3 | chr12 | NT_009743 | AC126176 | 103652327 | 3 | 0 | 0 | 1655 | 1655 |
S/G/Y/R/B/O |
NT_009743 | AC068643 | 103467640 | 3 | chr12 | NT_009743 | AC079903 | 103369458 | 1 | 19166 | 0 | 0 | 19166 |
S/G/Y/R/B/O |
NT_009743 | AC126176 | 103652327 | 3 | chr12 | NT_009743 | AC090000 | 103673888 | 3 | 2053 | 0 | 0 | 2053 |
S/G/Y/R/B/O |
NT_009743 | AC090000 | 103673888 | 3 | chr12 | NT_009743 | AC084364 | 103845387 | 3 | 0 | 1951 | 0 | 1951 |
S/G/Y/R/B/O |
NT_009743 | AC090000 | 103673888 | 3 |   |   | AC069035 | 103673888 | | 72190 | 2282 | 42455 | 116927 |
S/G/Y/R/B/O |
NT_009743 | AC084364 | 103845387 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_009743 | AC084364 | 103845387 | 3 |   |   | AC010190 | 103652327 | | 23300 | 0 | 0 | 23300 |
S/G/Y/R/B/O |
NT_009743 | AC084364 | 103845387 | 3 |   |   | AC069035 | 103652327 | | 50052 | 0 | 1408 | 51460 |
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