Chromosome 12 - Clone Overlaps

Chromosome 12 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037806	NT_009759	NT_033253	NT_009731	NT_035206	NT_024397	NT_009714	NT_035211
NT_009700	NT_035212	NT_033254	NT_033255	NT_024371	NT_024380	NT_024352	NT_009781
NT_009526	NT_026397	NT_024417	NT_009782	NT_009609	NT_030118	NT_009458	NT_009509
NT_009441	NT_009711	NT_035222	NT_009616	NT_029419	NT_009540	NT_009528	NT_024381
NT_024460	NT_024375	NT_015310	NT_009551	NT_019546	NT_024356	NT_009538	NT_025864
NT_037807	NT_030122	NT_019555	NT_009513	NT_009575	NT_009681	NT_009743	NT_037808
NT_035235	NT_009770	NT_009775	NT_037809	NT_037810	NT_009487	NT_009438	NT_009464
NT_033248	NT_037811	NT_009755	NT_009534	NT_024376	NT_009523	NT_035242	NT_009482
NT_035243	NT_027131	NT_024477	NT_009455

NT_019555

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_019555	AC026923	86899403	1	chr12	NT_019555	AC091525	86947032	3	99268	0	2633	101901
S/G/Y/R/B/O	NT_019555	AC026923	86899403	1			AC025157	26761560		61950	0	20176	82126
S/G/Y/R/B/O	NT_019555	AC026923	86899403	1			AC092883	86947032		63338	1858	14763	79959
S/G/Y/R/B/O	NT_019555	AC091525	86947032	3	chr12	NT_019555	AC079865	87076772	3	0	0	1642	1642
S/G/Y/R/B/O	NT_019555	AC091525	86947032	3			AC025157	86947032		48629	0	39550	88179
S/G/Y/R/B/O	NT_019555	AC091525	86947032	3			AC092883	87076772		45326	0	62183	107509
S/G/Y/R/B/O	NT_019555	AC079865	87076772	3	chr12	NT_019555	AC079596	87238260	3	0	0	202	202
S/G/Y/R/B/O	NT_019555	AC079865	87076772	3			AC025157	87076772		27375	2137	3801	33313
S/G/Y/R/B/O	NT_019555	AC079596	87238260	3	chr12	NT_019555	AC093122	87342056	3	0	1956	0	1956
S/G/Y/R/B/O	NT_019555	AC093122	87342056	3	chr12	NT_019555	AC010196	87448176	3	2001	0	0	2001
S/G/Y/R/B/O	NT_019555	AC010196	87448176	3	chr12	NT_019555	AC128681	87609417	3	0	0	0	0
S/G/Y/R/B/O	NT_019555	AC010196	87448176	3			AC079016	87238260		34778	0	0	34778
S/G/Y/R/B/O	NT_019555	AC010196	87448176	3			AC108711	87342056		30326	0	4594	34920
S/G/Y/R/B/O	NT_019555	AC010196	87448176	3			AC128678	87342056		20227	2329	8191	30747
S/G/Y/R/B/O	NT_019555	AC128681	87609417	3	chr12	NT_019555	AC087887	87667908	3	2000	0	0	2000
S/G/Y/R/B/O	NT_019555	AC128681	87609417	3			AC079016	87342056		52282	1654	0	53936
S/G/Y/R/B/O	NT_019555	AC128681	87609417	3			AC108711	87667908		52346	0	0	52346
S/G/Y/R/B/O	NT_019555	AC128681	87609417	3			AC128678	87667908		26723	2575	6130	35428
S/G/Y/R/B/O	NT_019555	AC087887	87667908	3	chr12	NT_019555	AC079597	87770434	3	2004	0	0	2004
S/G/Y/R/B/O	NT_019555	AC087887	87667908	3			AC024319	87667908		10057	6274	5978	22309
S/G/Y/R/B/O	NT_019555	AC087887	87667908	3			AC079016	87667908		29394	3806	0	33200
S/G/Y/R/B/O	NT_019555	AC079597	87770434	3	chr12	NT_019555	AC131149	87925196	3	2004	0	0	2004
S/G/Y/R/B/O	NT_019555	AC079597	87770434	3			AC011600	87609417		11825	0	9086	20911
S/G/Y/R/B/O	NT_019555	AC079597	87770434	3			AC024319	87609417		17179	3398	4840	25417
S/G/Y/R/B/O	NT_019555	AC131149	87925196	3	chr12	NT_019555	AC129351	87937408	3	2005	0	0	2005
S/G/Y/R/B/O	NT_019555	AC131149	87925196	3			AC011600	87925196		14161	0	0	14161
S/G/Y/R/B/O	NT_019555	AC129351	87937408	3	chr12	NT_019555	AC079459	88097019	3	2004	0	0	2004
S/G/Y/R/B/O	NT_019555	AC129351	87937408	3			AC011600	87937408		26091	2459	17091	45641
S/G/Y/R/B/O	NT_019555	AC129351	87937408	3			AC129675	88097019		112448	0	0	112448
S/G/Y/R/B/O	NT_019555	AC129351	87937408	3			AL157816	87925196		69878	0	0	69878
S/G/Y/R/B/O	NT_019555	AC079459	88097019	3	chr12	NT_019555	AC090108	88234091	3	0	1998	0	1998
S/G/Y/R/B/O	NT_019555	AC079459	88097019	3			AL157816	87937408		47241	0	0	47241
S/G/Y/R/B/O	NT_019555	AC090108	88234091	3	chr12	NT_019555	AC120105	88400928	3	0	0	0	0
S/G/Y/R/B/O	NT_019555	AC120105	88400928	3	chr12	NT_019555	AC125606	88489249	3	2004	0	0	2004
S/G/Y/R/B/O	NT_019555	AC120105	88400928	3			AC053502	88097019		40302	0	0	40302
S/G/Y/R/B/O	NT_019555	AC120105	88400928	3			AL445185	88489249		43558	0	0	43558
S/G/Y/R/B/O	NT_019555	AC125606	88489249	3	chr12	NT_019555	AC079598	88519750	3	2005	0	0	2005
S/G/Y/R/B/O	NT_019555	AC125606	88489249	3			AC053502	88489249		23600	0	1196	24796
S/G/Y/R/B/O	NT_019555	AC125606	88489249	3			AC074297	88489249		32500	0	0	32500
S/G/Y/R/B/O	NT_019555	AC079598	88519750	3	chr12	NT_019555	AC135896	88686641	3	0	1994	0	1994
S/G/Y/R/B/O	NT_019555	AC079598	88519750	3			AC012127	88400928		91303	0	0	91303
S/G/Y/R/B/O	NT_019555	AC079598	88519750	3			AC021685	88400928		79940	0	1467	81407
S/G/Y/R/B/O	NT_019555	AC079598	88519750	3			AC053502	88400928		63129	1862	4134	69125
S/G/Y/R/B/O	NT_019555	AC135896	88686641	3	chr12	NT_019555	AC090060	88695529	3	0	0	1841	1841
S/G/Y/R/B/O	NT_019555	AC135896	88686641	3			AC021685	88686641		12863	0	0	12863
S/G/Y/R/B/O	NT_019555	AC090060	88695529	3	chr12	NT_019555	AC091516	88854664	3	2005	0	0	2005
S/G/Y/R/B/O	NT_019555	AC091516	88854664	3	chr12	NT_019555	AC087865	89011657	3	141827	0	0	141827
S/G/Y/R/B/O	NT_019555	AC091516	88854664	3			AC131010	88695529		45624	6903	2058	54585
S/G/Y/R/B/O	NT_019555	AC087865	89011657	3	chr12	NT_019555	AC127901	89037814	3	0	842	0	842
S/G/Y/R/B/O	NT_019555	AC087865	89011657	3			AC131010	89037814		67396	6898	5693	79987
S/G/Y/R/B/O	NT_019555	AC127901	89037814	3	chr12	NT_019555	AC084360	89102181	3	2000	0	0	2000
S/G/Y/R/B/O	NT_019555	AC084360	89102181	3	chr12	NT_019555	AC129416	89161789	3	2004	0	0	2004
S/G/Y/R/B/O	NT_019555	AC084360	89102181	3			AC007447	89011657		61599	0	0	61599
S/G/Y/R/B/O	NT_019555	AC129416	89161789	3	chr12	NT_019555	AC024941	89299780	3	0	1918	0	1918
S/G/Y/R/B/O	NT_019555	AC129416	89161789	3			AC007447	89161789		95601	0	0	95601
S/G/Y/R/B/O	NT_019555	AC024941	89299780	3	chr12	NT_019555	AC123580	89470108	3	0	1996	0	1996
S/G/Y/R/B/O	NT_019555	AC024941	89299780	3			AC034170	89102181		29978	29509	34527	94014
S/G/Y/R/B/O	NT_019555	AC123580	89470108	3	chr12	NT_019555	AC083807	89484493	3	2004	0	0	2004
S/G/Y/R/B/O	NT_019555	AC083807	89484493	3	chr12	NT_019555	AC117499	89606076	3	2004	0	0	2004
S/G/Y/R/B/O	NT_019555	AC083807	89484493	3			AC021925	89484493		33012	0	0	33012
S/G/Y/R/B/O	NT_019555	AC083807	89484493	3			AC074004	89484493		38864	7012	29523	75399
S/G/Y/R/B/O	NT_019555	AC117499	89606076	3	chr12	NT_019555	AC090642	89618037	3	2005	0	0	2005
S/G/Y/R/B/O	NT_019555	AC117499	89606076	3			AC021925	89470108		13965	0	0	13965
S/G/Y/R/B/O	NT_019555	AC090642	89618037	3	chr12	NT_019555	AC006199	89793639	3	68766	0	0	68766
S/G/Y/R/B/O	NT_019555	AC090642	89618037	3			AC021925	89793639		38236	5210	0	43446
S/G/Y/R/B/O	NT_019555	AC090642	89618037	3			AC051662	89793639		76434	2431	43467	122332
S/G/Y/R/B/O	NT_019555	AC090642	89618037	3			AC117493	89793639		65217	0	0	65217
S/G/Y/R/B/O	NT_019555	AC006199	89793639	3	chr12	NT_019555	AC136127	89889513	3	2005	0	0	2005
S/G/Y/R/B/O	NT_019555	AC006199	89793639	3			AC051662	89606076		25751	1751	18383	45885
S/G/Y/R/B/O	NT_019555	AC006199	89793639	3			AC117493	89618037		144627	0	0	144627
S/G/Y/R/B/O	NT_019555	AC136127	89889513	3	chr12	NT_019555	AC092891	89908288	3	2000	0	0	2000
S/G/Y/R/B/O	NT_019555	AC092891	89908288	3	chr12	NT_019555	AC024909	90017728	3	0	1996	0	1996
S/G/Y/R/B/O	NT_019555	AC092891	89908288	3			AC068613	90017728		77081	2243	10799	90123
S/G/Y/R/B/O	NT_019555	AC024909	90017728	3	chr12	NT_019555	AC010201	90194883	3	2940	0	0	2940
S/G/Y/R/B/O	NT_019555	AC024909	90017728	3			AC021903	90194883		132004	6967	8375	147346
S/G/Y/R/B/O	NT_019555	AC024909	90017728	3			AC025158	90194883		32496	0	15832	48328
S/G/Y/R/B/O	NT_019555	AC024909	90017728	3			AC068613	90194883		20257	1621	1522	23400
S/G/Y/R/B/O	NT_019555	AC024909	90017728	3			AC130402	89908288		100710	4938	8611	114259
S/G/Y/R/B/O	NT_019555	AC010201	90194883	3	chr12	NT_019555	AC025034	90360794	3	0	1997	0	1997
S/G/Y/R/B/O	NT_019555	AC010201	90194883	3			AC025158	90360794		37558	0	36943	74501
S/G/Y/R/B/O	NT_019555	AC010201	90194883	3			AC083808	90360794		51213	0	25269	76482
S/G/Y/R/B/O	NT_019555	AC025034	90360794	3	chr12	NT_019555	AC068641	90432278	3	2004	0	0	2004
S/G/Y/R/B/O	NT_019555	AC068641	90432278	3	chr12	NT_019555	AC009522	90536799	3	2004	0	0	2004
S/G/Y/R/B/O	NT_019555	AC068641	90432278	3			AC073860	90360794		36994	0	0	36994
S/G/Y/R/B/O	NT_019555	AC068641	90432278	3			AC125635	90360794		26990	0	0	26990
S/G/Y/R/B/O	NT_019555	AC009522	90536799	3	chr12	NT_019555	AC084200	90663461	3	2593	0	0	2593
S/G/Y/R/B/O	NT_019555	AC009522	90536799	3			AC073860	90432278		128530	0	0	128530
S/G/Y/R/B/O	NT_019555	AC009522	90536799	3			AC125635	90663461		25191	6318	4123	35632
S/G/Y/R/B/O	NT_019555	AC084200	90663461	3	chr12	NT_019555	AC126178	90852753	3	0	1998	0	1998
S/G/Y/R/B/O	NT_019555	AC084200	90663461	3			AC073860	90536799		11171	0	0	11171
S/G/Y/R/B/O	NT_019555	AC084200	90663461	3			AC125635	90536799		11145	0	0	11145
S/G/Y/R/B/O	NT_019555	AC126178	90852753	3	chr12	NT_019555	AC013246	90978194	3	0	0	0	0
S/G/Y/R/B/O	NT_019555	AC013246	90978194	3	chr12	NT_019555	AC026307	91138011	3	0	0	209	209
S/G/Y/R/B/O	NT_019555	AC013246	90978194	3			AC023053	90663461		12224	0	0	12224
S/G/Y/R/B/O	NT_019555	AC013246	90978194	3			AC089997	91138011		136394	0	0	136394
S/G/Y/R/B/O	NT_019555	AC026307	91138011	3	chr12	NT_019555	AC079407	91304159	3	0	0	0	0
S/G/Y/R/B/O	NT_019555	AC026307	91138011	3			AC011214	91138011		114146	0	2711	116857
S/G/Y/R/B/O	NT_019555	AC026307	91138011	3			AC073579	90978194		68424	2020	9861	80305
S/G/Y/R/B/O	NT_019555	AC026307	91138011	3			AC089997	90978194		13913	0	0	13913
S/G/Y/R/B/O	NT_019555	AC079407	91304159	3	chr12	NT_019555	AC095347	91304550	3	0	0	395	395
S/G/Y/R/B/O	NT_019555	AC095347	91304550	3	chr12	NT_019555	AC084365	91395755	3	0	1943	0	1943
S/G/Y/R/B/O	NT_019555	AC095347	91304550	3			AC002462	91304550		10516	0	0	10516
S/G/Y/R/B/O	NT_019555	AC095347	91304550	3			AC011214	91304550		61729	0	0	61729
S/G/Y/R/B/O	NT_019555	AC084365	91395755	3	chr12	NT_019555	AC112481	91582441	3	2094	0	0	2094
S/G/Y/R/B/O	NT_019555	AC084365	91395755	3			AC002462	91395755		91496	0	0	91496
S/G/Y/R/B/O	NT_019555	AC084365	91395755	3			AC023370	91395755		51303	2709	0	54012
S/G/Y/R/B/O	NT_019555	AC084365	91395755	3			AC027144	91395755		23644	4840	4953	33437
S/G/Y/R/B/O	NT_019555	AC112481	91582441	3	chr12	NT_019555	AC123024	91697342	3	2005	0	0	2005
S/G/Y/R/B/O	NT_019555	AC112481	91582441	3			AC023370	91582441		38612	0	273	38885
S/G/Y/R/B/O	NT_019555	AC112481	91582441	3			AC027144	91582441		82297	7404	10128	99829
S/G/Y/R/B/O	NT_019555	AC123024	91697342	3	chr12	NT_019555	AC123025	91778212	3	0	0	0	0
S/G/Y/R/B/O	NT_019555	AC123025	91778212	3	chr12	NT_019555	AC078873	91786456	3	2004	0	0	2004
S/G/Y/R/B/O	NT_019555	AC078873	91786456	3	chr12	NT_019555	AC007115	91974525	3	0	0	117587	117587
S/G/Y/R/B/O	NT_019555	AC007115	91974525	3	chr12	NT_019555	AC009728	92037604	3	0	0	0	0
S/G/Y/R/B/O	NT_019555	AC007115	91974525	3			AC069263	91778212		38249	2542	16270	57061
S/G/Y/R/B/O	NT_019555	AC009728	92037604	3	chr12	NT_019555	AC025035	92083314	3	2005	0	0	2005
S/G/Y/R/B/O	NT_019555	AC009728	92037604	3			AC069263	92083314		49562	2542	16270	68374
S/G/Y/R/B/O	NT_019555	AC025035	92083314	3	chr12	NT_019555	AC090016	92246749	3	0	0	1611	1611
S/G/Y/R/B/O	NT_019555	AC025035	92083314	3			AC021181	92037604		42486	4637	14799	61922
S/G/Y/R/B/O	NT_019555	AC090016	92246749	3	chr12	NT_019555	AC090041	92366560	3	2001	0	0	2001
S/G/Y/R/B/O	NT_019555	AC090016	92246749	3			AC021181	92246749		87238	2588	28796	118622
S/G/Y/R/B/O	NT_019555	AC090016	92246749	3			AC024444	92246749		49844	0	2599	52443
S/G/Y/R/B/O	NT_019555	AC090016	92246749	3			AC090040	92083314		10922	0	3284	14206
S/G/Y/R/B/O	NT_019555	AC090041	92366560	3	chr12	NT_019555	AC126175	92473538	3	2006	0	0	2006
S/G/Y/R/B/O	NT_019555	AC090041	92366560	3			AC024444	92366560		63169	12553	11625	87347
S/G/Y/R/B/O	NT_019555	AC126175	92473538	3	chr12	NT_019555	AC090110	92481832	3	2025	0	0	2025
S/G/Y/R/B/O	NT_019555	AC090110	92481832	3	chr12	NT_019555	AC025254	92510078	3	0	0	0	0
S/G/Y/R/B/O	NT_019555	AC090110	92481832	3			AC024467	92481832		24721	2095	1368	28184
S/G/Y/R/B/O	NT_019555	AC025254	92510078	3	chr12	NT_019555	AC090049	92666942	3	2002	0	0	2002
S/G/Y/R/B/O	NT_019555	AC025254	92510078	3			AC024467	92473538		96078	5429	19213	120720
S/G/Y/R/B/O	NT_019555	AC090049	92666942	3	chr12	NT_019555	AC123512	92770921	3	0	1988	0	1988
S/G/Y/R/B/O	NT_019555	AC123512	92770921	3