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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_009528 | AC090676 | 71019261 | 1 | chr12 | NT_009528 | AC084877 | 71159482 | 3 | 24382 | 0 | 4898 | 29280 |
S/G/Y/R/B/O |
NT_009528 | AC084877 | 71159482 | 3 | chr12 | NT_009528 | AC123905 | 71338694 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009528 | AC084877 | 71159482 | 3 |   |   | AC055113 | 71159482 | | 16493 | 1809 | 20068 | 38370 |
S/G/Y/R/B/O |
NT_009528 | AC123905 | 71338694 | 3 | chr12 | NT_009528 | AC025575 | 71410630 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009528 | AC123905 | 71338694 | 3 |   |   | AC055113 | 71410630 | | 12999 | 0 | 52472 | 65471 |
S/G/Y/R/B/O |
NT_009528 | AC025575 | 71410630 | 3 | chr12 | NT_009528 | AC125617 | 71567157 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009528 | AC025575 | 71410630 | 3 |   |   | AC041044 | 71159482 | | 61815 | 0 | 19499 | 81314 |
S/G/Y/R/B/O |
NT_009528 | AC025575 | 71410630 | 3 |   |   | AC055113 | 71159482 | | 17492 | 0 | 0 | 17492 |
S/G/Y/R/B/O |
NT_009528 | AC025575 | 71410630 | 3 |   |   | AC079599 | 71159482 | | 118665 | 0 | 0 | 118665 |
S/G/Y/R/B/O |
NT_009528 | AC025575 | 71410630 | 3 |   |   | AC092917 | 71159482 | | 61482 | 0 | 19475 | 80957 |
S/G/Y/R/B/O |
NT_009528 | AC125617 | 71567157 | 3 | chr12 | NT_009528 | AC090116 | 71699399 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009528 | AC125617 | 71567157 | 3 |   |   | AC041044 | 71410630 | | 53552 | 0 | 0 | 53552 |
S/G/Y/R/B/O |
NT_009528 | AC125617 | 71567157 | 3 |   |   | AC092917 | 71410630 | | 53513 | 0 | 0 | 53513 |
S/G/Y/R/B/O |
NT_009528 | AC090116 | 71699399 | 3 | chr12 | NT_009528 | AC078860 | 71859399 | 3 | 2427 | 0 | 0 | 2427 |
S/G/Y/R/B/O |
NT_009528 | AC078860 | 71859399 | 3 | chr12 | NT_009528 | AC073612 | 71868108 | 3 | 133519 | 0 | 0 | 133519 |
S/G/Y/R/B/O |
NT_009528 | AC078860 | 71859399 | 3 |   |   | AC122689 | 71699399 | | 27896 | 0 | 0 | 27896 |
S/G/Y/R/B/O |
NT_009528 | AC078860 | 71859399 | 3 |   |   | AC122691 | 71699399 | | 27896 | 0 | 0 | 27896 |
S/G/Y/R/B/O |
NT_009528 | AC073612 | 71868108 | 3 | chr12 | NT_009528 | AC011601 | 72052061 | 3 | 0 | 2103 | 0 | 2103 |
S/G/Y/R/B/O |
NT_009528 | AC073612 | 71868108 | 3 |   |   | AC122689 | 71859399 | | 53477 | 0 | 0 | 53477 |
S/G/Y/R/B/O |
NT_009528 | AC073612 | 71868108 | 3 |   |   | AC122691 | 71859399 | | 80152 | 0 | 0 | 80152 |
S/G/Y/R/B/O |
NT_009528 | AC011601 | 72052061 | 3 | chr12 | NT_009528 | AC012018 | 72056362 | 3 | 2046 | 0 | 0 | 2046 |
S/G/Y/R/B/O |
NT_009528 | AC012018 | 72056362 | 3 | chr12 | NT_009528 | AC089984 | 72114477 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_009528 | AC089984 | 72114477 | 3 | chr12 | NT_009528 | AC090109 | 72260116 | 3 | 5487 | 0 | 0 | 5487 |
S/G/Y/R/B/O |
NT_009528 | AC089984 | 72114477 | 3 |   |   | AC009759 | 72114477 | | 103114 | 0 | 937 | 104051 |
S/G/Y/R/B/O |
NT_009528 | AC089984 | 72114477 | 3 |   |   | AC122689 | 72260116 | | 16700 | 0 | 0 | 16700 |
S/G/Y/R/B/O |
NT_009528 | AC089984 | 72114477 | 3 |   |   | AC122691 | 72260116 | | 28894 | 0 | 0 | 28894 |
S/G/Y/R/B/O |
NT_009528 | AC089984 | 72114477 | 3 |   |   | AC126566 | 72260116 | | 107149 | 0 | 390 | 107539 |
S/G/Y/R/B/O |
NT_009528 | AC090109 | 72260116 | 3 | chr12 | NT_009528 | AC128795 | 72401751 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009528 | AC090109 | 72260116 | 3 |   |   | AC023966 | 72260116 | | 67542 | 5334 | 13603 | 86479 |
S/G/Y/R/B/O |
NT_009528 | AC090109 | 72260116 | 3 |   |   | AC126566 | 72114477 | | 54201 | 0 | 0 | 54201 |
S/G/Y/R/B/O |
NT_009528 | AC128795 | 72401751 | 3 | chr12 | NT_009528 | AC108720 | 72423617 | 3 | 2003 | 0 | 0 | 2003 |
S/G/Y/R/B/O |
NT_009528 | AC108720 | 72423617 | 3 | chr12 | NT_009528 | AC087886 | 72508579 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_009528 | AC108720 | 72423617 | 3 |   |   | AC023406 | 72423617 | | 71430 | 1644 | 3454 | 76528 |
S/G/Y/R/B/O |
NT_009528 | AC108720 | 72423617 | 3 |   |   | AC069361 | 72423617 | | 55432 | 1996 | 2826 | 60254 |
S/G/Y/R/B/O |
NT_009528 | AC087886 | 72508579 | 3 | chr12 | NT_009528 | AC016256 | 72698502 | 3 | 5161 | 0 | 0 | 5161 |
S/G/Y/R/B/O |
NT_009528 | AC087886 | 72508579 | 3 |   |   | AC023406 | 72698502 | | 22705 | 0 | 33043 | 55748 |
S/G/Y/R/B/O |
NT_009528 | AC087886 | 72508579 | 3 |   |   | AC069361 | 72698502 | | 54540 | 0 | 1307 | 55847 |
S/G/Y/R/B/O |
NT_009528 | AC016256 | 72698502 | 3 | chr12 | NT_009528 | AC078921 | 72857741 | 3 | 0 | 0 | 211 | 211 |
S/G/Y/R/B/O |
NT_009528 | AC078921 | 72857741 | 3 | chr12 | NT_009528 | AC133480 | 72965171 | 3 | 2016 | 0 | 0 | 2016 |
S/G/Y/R/B/O |
NT_009528 | AC078921 | 72857741 | 3 |   |   | AC011273 | 72508579 | | 22463 | 0 | 0 | 22463 |
S/G/Y/R/B/O |
NT_009528 | AC078921 | 72857741 | 3 |   |   | AC024531 | 72698502 | | 31937 | 21021 | 26355 | 79313 |
S/G/Y/R/B/O |
NT_009528 | AC078921 | 72857741 | 3 |   |   | AC025258 | 72698502 | | 90166 | 0 | 0 | 90166 |
S/G/Y/R/B/O |
NT_009528 | AC133480 | 72965171 | 3 | chr12 | NT_009528 | AC131213 | 73091456 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009528 | AC133480 | 72965171 | 3 |   |   | AC011273 | 72965171 | | 88590 | 1997 | 3665 | 94252 |
S/G/Y/R/B/O |
NT_009528 | AC133480 | 72965171 | 3 |   |   | AC011576 | 72965171 | | 22460 | 0 | 0 | 22460 |
S/G/Y/R/B/O |
NT_009528 | AC133480 | 72965171 | 3 |   |   | AC024531 | 72965171 | | 31991 | 7795 | 2007 | 41793 |
S/G/Y/R/B/O |
NT_009528 | AC131213 | 73091456 | 3 | chr12 | NT_009528 | AC117495 | 73243437 | 3 | 2017 | 0 | 0 | 2017 |
S/G/Y/R/B/O |
NT_009528 | AC117495 | 73243437 | 3 | chr12 | NT_009528 | AC090503 | 73408169 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009528 | AC117495 | 73243437 | 3 |   |   | AC064873 | 73243437 | | 54499 | 0 | 9154 | 63653 |
S/G/Y/R/B/O |
NT_009528 | AC090503 | 73408169 | 3 | chr12 | NT_009528 | AC130403 | 73629243 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_009528 | AC090503 | 73408169 | 3 |   |   | AC064858 | 73091456 | | 68738 | 1589 | 0 | 70327 |
S/G/Y/R/B/O |
NT_009528 | AC130403 | 73629243 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_009528 | AC130403 | 73629243 | 3 |   |   | AC068752 | 73629243 | | 74920 | 6153 | 21959 | 103032 |
S/G/Y/R/B/O |
NT_009528 | AC130403 | 73629243 | 3 |   |   | AC068752 | 73629243 | | 74920 | 6153 | 21959 | 103032 |
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