Chromosome 12 - Clone Overlaps

Chromosome 12 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037806	NT_009759	NT_033253	NT_009731	NT_035206	NT_024397	NT_009714	NT_035211
NT_009700	NT_035212	NT_033254	NT_033255	NT_024371	NT_024380	NT_024352	NT_009781
NT_009526	NT_026397	NT_024417	NT_009782	NT_009609	NT_030118	NT_009458	NT_009509
NT_009441	NT_009711	NT_035222	NT_009616	NT_029419	NT_009540	NT_009528	NT_024381
NT_024460	NT_024375	NT_015310	NT_009551	NT_019546	NT_024356	NT_009538	NT_025864
NT_037807	NT_030122	NT_019555	NT_009513	NT_009575	NT_009681	NT_009743	NT_037808
NT_035235	NT_009770	NT_009775	NT_037809	NT_037810	NT_009487	NT_009438	NT_009464
NT_033248	NT_037811	NT_009755	NT_009534	NT_024376	NT_009523	NT_035242	NT_009482
NT_035243	NT_027131	NT_024477	NT_009455

NT_033254

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_033254	AC068794	27581502	3	chr12	NT_033254	AC087257	27718545	3	108813	0	0	108813
S/G/Y/R/B/O	NT_033254	AC068794	27581502	3			AC016008	27341091		109562	2476	0	112038
S/G/Y/R/B/O	NT_033254	AC068794	27581502	3			AC021971	27341091		91400	7125	0	98525
S/G/Y/R/B/O	NT_033254	AC087257	27718545	3	chr12	NT_033254	AC009509	27779591	3	16828	0	0	16828
S/G/Y/R/B/O	NT_033254	AC087257	27718545	3			AC016008	27779591		99702	1935	0	101637
S/G/Y/R/B/O	NT_033254	AC087257	27718545	3			AC021971	27779591		147196	10072	0	157268
S/G/Y/R/B/O	NT_033254	AC009509	27779591	3	chr12	NT_033254	AC009511	27955453	3	0	0	206	206
S/G/Y/R/B/O	NT_033254	AC009509	27779591	3			AC021971	27955453		16459	0	0	16459
S/G/Y/R/B/O	NT_033254	AC009511	27955453	3	chr12	NT_033254	AC008011	28015629	3	0	0	197	197
S/G/Y/R/B/O	NT_033254	AC008011	28015629	3	chr12	NT_033254	AC022363	28172700	3	0	0	188	188
S/G/Y/R/B/O	NT_033254	AC008011	28015629	3			AC016393	27955453		17312	25511	24175	66998
S/G/Y/R/B/O	NT_033254	AC022363	28172700	3	chr12	NT_033254	AC022364	28287445	3	0	0	205	205
S/G/Y/R/B/O	NT_033254	AC022363	28172700	3			AC016393	28015629		12940	0	0	12940
S/G/Y/R/B/O	NT_033254	AC022363	28172700	3			AF188024	28287445		106765	0	0	106765
S/G/Y/R/B/O	NT_033254	AC022364	28287445	3	chr12	NT_033254	AC022079	28360797	3	0	0	199	199
S/G/Y/R/B/O	NT_033254	AC022079	28360797	3	chr12	NT_033254	AC024939	28541791	3	0	0	197	197
S/G/Y/R/B/O	NT_033254	AC022079	28360797	3			AC114968	28541791		62207	0	10182	72389
S/G/Y/R/B/O	NT_033254	AC024939	28541791	3	chr12	NT_033254	AC046131	28600294	3	0	0	139	139
S/G/Y/R/B/O	NT_033254	AC024939	28541791	3			AC073872	28600294		14164	0	0	14164
S/G/Y/R/B/O	NT_033254	AC024939	28541791	3			AC114968	28600294		12470	0	0	12470
S/G/Y/R/B/O	NT_033254	AC046131	28600294	3	chr12	NT_033254	AC084754	28711286	3	0	0	312	312
S/G/Y/R/B/O	NT_033254	AC046131	28600294	3			AC073872	28541791		39628	1186	17670	58484
S/G/Y/R/B/O	NT_033254	AC084754	28711286	3	chr12	NT_033254	AC022081	28887600	3	19410	0	0	19410
S/G/Y/R/B/O	NT_033254	AC084754	28711286	3			AC053493	28600294		48406	2363	8857	59626
S/G/Y/R/B/O	NT_033254	AC022081	28887600	3	chr12	NT_033254	AC024255	29011365	3	0	0	0	0
S/G/Y/R/B/O	NT_033254	AC022081	28887600	3			AC022651	28600294		60126	0	15937	76063
S/G/Y/R/B/O	NT_033254	AC022081	28887600	3			AC053493	28600294		37436	736	0	38172
S/G/Y/R/B/O	NT_033254	AC024255	29011365	3	chr12	NT_033254	AC012150	29176359	3	0	0	125	125
S/G/Y/R/B/O	NT_033254	AC024255	29011365	3			AC022651	29176359		30913	0	2062	32975
S/G/Y/R/B/O	NT_033254	AC012150	29176359	3	chr12	NT_033254	AC009318	29403539	3	4454	0	0	4454
S/G/Y/R/B/O	NT_033254	AC012150	29176359	3			AC025736	29011365		33075	13031	2191	48297
S/G/Y/R/B/O	NT_033254	AC009318	29403539	3	chr12	NT_033254	AC012151	29602502	3	0	2005	0	2005
S/G/Y/R/B/O	NT_033254	AC012151	29602502	3	chr12	NT_033254	AC009320	29682436	3	2005	0	0	2005
S/G/Y/R/B/O	NT_033254	AC012151	29602502	3			AC079846	29682436		23577	10152	32279	66008
S/G/Y/R/B/O	NT_033254	AC012151	29602502	3			AL157824	29682436		19759	0	0	19759
S/G/Y/R/B/O	NT_033254	AC009320	29682436	3	chr12	NT_033254	AC009510	29739602	3	0	0	267	267
S/G/Y/R/B/O	NT_033254	AC009320	29682436	3			AC079846	29602502		37612	2933	12565	53110
S/G/Y/R/B/O	NT_033254	AC009320	29682436	3			AL157824	29602502		17788	0	13830	31618
S/G/Y/R/B/O	NT_033254	AC009510	29739602	3	chr12	NT_033254	AC022078	29885194	3	19581	0	0	19581
S/G/Y/R/B/O	NT_033254	AC009510	29739602	3			AL157824	29885194		40082	0	7452	47534
S/G/Y/R/B/O	NT_033254	AC022078	29885194	3	chr12	NT_033254	AC023281	30035029	3	0	434	0	434
S/G/Y/R/B/O	NT_033254	AC022078	29885194	3			AC012579	29739602		64204	2619	26443	93266
S/G/Y/R/B/O	NT_033254	AC023281	30035029	3	chr12	NT_033254	AC092182	30180005	3	2003	0	0	2003
S/G/Y/R/B/O	NT_033254	AC023281	30035029	3			AC026060	29885194		31793	0	0	31793
S/G/Y/R/B/O	NT_033254	AC092182	30180005	3	chr12	NT_033254	AC023511	30259483	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033254	AC092182	30180005	3			AC026060	30259483		55528	0	0	55528
S/G/Y/R/B/O	NT_033254	AC023511	30259483	3	chr12	NT_033254	AC078776	30433114	3	0	0	294	294
S/G/Y/R/B/O	NT_033254	AC023511	30259483	3			AC010783	30259483		15920	0	0	15920
S/G/Y/R/B/O	NT_033254	AC023511	30259483	3			AC026060	30259483		39308	2336	24598	66242
S/G/Y/R/B/O	NT_033254	AC023511	30259483	3			AC068811	30259483		152171	0	0	152171
S/G/Y/R/B/O	NT_033254	AC023511	30259483	3			AC079060	30433114		17465	2880	15431	35776
S/G/Y/R/B/O	NT_033254	AC078776	30433114	3	chr12	NT_033254	AC026371	30528621	3	0	0	237	237
S/G/Y/R/B/O	NT_033254	AC078776	30433114	3			AC010783	30180005		95558	0	0	95558
S/G/Y/R/B/O	NT_033254	AC078776	30433114	3			AC027519	30528621		26111	2109	0	28220
S/G/Y/R/B/O	NT_033254	AC026371	30528621	3	chr12	NT_033254	AC023426	30681335	3	0	0	185	185
S/G/Y/R/B/O	NT_033254	AC026371	30528621	3			AC027519	30681335		49498	8538	14144	72180
S/G/Y/R/B/O	NT_033254	AC023426	30681335	3	chr12	NT_033254	AC012673	30829760	3	2005	0	0	2005
S/G/Y/R/B/O	NT_033254	AC012673	30829760	3	chr12	NT_033254	AC010198	30875057	3	2001	0	0	2001
S/G/Y/R/B/O	NT_033254	AC010198	30875057	3	chr12	NT_033254	AC008150	31072126	3	0	0	0	0
S/G/Y/R/B/O	NT_033254	AC010198	30875057	3			AC023498	30829760		161515	0	0	161515
S/G/Y/R/B/O	NT_033254	AC008150	31072126	3	chr12	NT_033254	AC008013	31131089	3	0	0	213	213
S/G/Y/R/B/O	NT_033254	AC008013	31131089	3	chr12	NT_033254	AC008010	31299862	3	0	0	206	206
S/G/Y/R/B/O	NT_033254	AC008010	31299862	3	chr12	NT_033254	AC024940	31320067	3	0	0	1606	1606
S/G/Y/R/B/O	NT_033254	AC024940	31320067	3	chr12	NT_033254	AC068792	31524019	3	0	2005	0	2005
S/G/Y/R/B/O	NT_033254	AC024940	31320067	3			AC011324	31299862		17233	0	7202	24435
S/G/Y/R/B/O	NT_033254	AC024940	31320067	3			AC012156	31299862		162198	0	0	162198
S/G/Y/R/B/O	NT_033254	AC024940	31320067	3			AC068793	31524019		46844	1818	38921	87583
S/G/Y/R/B/O	NT_033254	AC068792	31524019	3	chr12	NT_033254	AC022080	31628291	3	2002	0	0	2002
S/G/Y/R/B/O	NT_033254	AC068792	31524019	3			AC011324	31524019		54842	0	14312	69154
S/G/Y/R/B/O	NT_033254	AC068792	31524019	3			AC068793	31320067		26237	0	0	26237
S/G/Y/R/B/O	NT_033254	AC022080	31628291	3	chr12	NT_033254	AC023157	31804493	1	16270	0	0	16270
S/G/Y/R/B/O	NT_033254	AC022080	31628291	3			AC011324	31320067		40274	0	0	40274
S/G/Y/R/B/O	NT_033254	AC022080	31628291	3			AC019255	31320067		117626	3572	0	121198
S/G/Y/R/B/O	NT_033254	AC022080	31628291	3			AC068293	31804493		14658	9877	19206	43741
S/G/Y/R/B/O	NT_033254	AC023157	31804493	1	chr12	NT_033254	AC023050	31953441	3	44814	0	0	44814
S/G/Y/R/B/O	NT_033254	AC023157	31804493	1			AC019255	97331735		12249	5722	991	18962
S/G/Y/R/B/O	NT_033254	AC023157	31804493	1			AL390843	31953441		13118	0	12586	25704
S/G/Y/R/B/O	NT_033254	AC023050	31953441	3	chr12	NT_033254	AC016957	32140305	3	2004	0	0	2004
S/G/Y/R/B/O	NT_033254	AC023050	31953441	3			AC055726	31804493		23462	0	5666	29128
S/G/Y/R/B/O	NT_033254	AC023050	31953441	3			AL390843	31804493		35359	2099	115546	153004
S/G/Y/R/B/O	NT_033254	AC016957	32140305	3	chr12	NT_033254	AC048344	32187040	3	0	0	0	0
S/G/Y/R/B/O	NT_033254	AC048344	32187040	3	chr12	NT_033254	AC016954	32311467	3	0	1990	0	1990
S/G/Y/R/B/O	NT_033254	AC048344	32187040	3			AC021108	32311467		28659	2553	1244	32456
S/G/Y/R/B/O	NT_033254	AC048344	32187040	3			AC023766	32311467		66918	8777	27842	103537
S/G/Y/R/B/O	NT_033254	AC016954	32311467	3	chr12	NT_033254	AC026356	32499666	3	0	0	0	0
S/G/Y/R/B/O	NT_033254	AC016954	32311467	3	chr12	NT_033254	AC023973	32535251	1	40440	1679	8267	50386
S/G/Y/R/B/O	NT_033254	AC016954	32311467	3			AC021108	32311467		102992	2314	16836	122142
S/G/Y/R/B/O	NT_033254	AC016954	32311467	3			AC023766	32311467		30143	1526	9923	41592
S/G/Y/R/B/O	NT_033254	AC016954	32311467	3			AC068887	32187040		23447	0	0	23447
S/G/Y/R/B/O	NT_033254	AC026356	32499666	3	chr12	NT_033254	AC023973	32535251	1	15214	0	5736	20950
S/G/Y/R/B/O	NT_033254	AC023973	32535251	1	chr12	NT_033254	AC087245	32588756	3	28398	6038	12432	46868
S/G/Y/R/B/O	NT_033254	AC023973	32535251	1	chr12	NT_033254	AC016954	32311467	3	40440	1679	8267	50386
S/G/Y/R/B/O	NT_033254	AC023973	32535251	1			AC021108	32311467		30770	2259	853	33882
S/G/Y/R/B/O	NT_033254	AC023973	32535251	1			AC026558	32499666		15675	4653	28585	48913
S/G/Y/R/B/O	NT_033254	AC087245	32588756	3	chr12	NT_033254	AC090677	32682098	3	2002	0	0	2002
S/G/Y/R/B/O	NT_033254	AC087245	32588756	3			AC026558	32535251		49507	6196	8015	63718
S/G/Y/R/B/O	NT_033254	AC090677	32682098	3	chr12	NT_033254	AC090440	32740523	3	2003	0	0	2003
S/G/Y/R/B/O	NT_033254	AC090677	32682098	3			AC026558	32682098		49522	4280	1062	54864
S/G/Y/R/B/O	NT_033254	AC090440	32740523	3	chr12	NT_033254	AC084824	32873148	3	2003	0	0	2003
S/G/Y/R/B/O	NT_033254	AC084824	32873148	3	chr12	NT_033254	AC087588	32969380	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033254	AC087588	32969380	3	chr12	NT_033254	AC087311	33113547	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033254	AC087588	32969380	3			AC019269	32740523		92640	0	0	92640
S/G/Y/R/B/O	NT_033254	AC087311	33113547	3	chr12	NT_033254	AC026357	33271235	3	0	2002	0	2002
S/G/Y/R/B/O	NT_033254	AC087311	33113547	3			AC019269	33113547		10322	0	0	10322
S/G/Y/R/B/O	NT_033254	AC026357	33271235	3	chr12	NT_033254	AC021070	33358105	3	2005	0	0	2005
S/G/Y/R/B/O	NT_033254	AC026357	33271235	3			AC016441	32969380		21651	6642	4852	33145
S/G/Y/R/B/O	NT_033254	AC021070	33358105	3	chr12	NT_033254	AC023158	33519078	3	0	0	203	203
S/G/Y/R/B/O	NT_033254	AC021070	33358105	3			AC016441	33113547		21626	4869	10235	36730
S/G/Y/R/B/O	NT_033254	AC023158	33519078	3	chr12	NT_033254	AC016956	33665405	3	6338	0	0	6338
S/G/Y/R/B/O	NT_033254	AC016956	33665405	3
S/G/Y/R/B/O	NT_033254	AC016956	33665405	3			AC023052	33358105		133112	0	0	133112