Chromosome 12 - Clone Overlaps

Chromosome 12 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037806	NT_009759	NT_033253	NT_009731	NT_035206	NT_024397	NT_009714	NT_035211
NT_009700	NT_035212	NT_033254	NT_033255	NT_024371	NT_024380	NT_024352	NT_009781
NT_009526	NT_026397	NT_024417	NT_009782	NT_009609	NT_030118	NT_009458	NT_009509
NT_009441	NT_009711	NT_035222	NT_009616	NT_029419	NT_009540	NT_009528	NT_024381
NT_024460	NT_024375	NT_015310	NT_009551	NT_019546	NT_024356	NT_009538	NT_025864
NT_037807	NT_030122	NT_019555	NT_009513	NT_009575	NT_009681	NT_009743	NT_037808
NT_035235	NT_009770	NT_009775	NT_037809	NT_037810	NT_009487	NT_009438	NT_009464
NT_033248	NT_037811	NT_009755	NT_009534	NT_024376	NT_009523	NT_035242	NT_009482
NT_035243	NT_027131	NT_024477	NT_009455

NT_009781

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_009781	AC087897	38777242	3	chr12	NT_009781	AC023795	38942215	3	0	1999	0	1999
S/G/Y/R/B/O	NT_009781	AC087897	38777242	3			AC026902	38942215		43969	2866	27220	74055
S/G/Y/R/B/O	NT_009781	AC023795	38942215	3	chr12	NT_009781	AC069442	39102049	3	0	0	199	199
S/G/Y/R/B/O	NT_009781	AC023795	38942215	3			AC026902	38942215		29618	2252	1186	33056
S/G/Y/R/B/O	NT_009781	AC069442	39102049	3	chr12	NT_009781	AC067735	39168990	3	0	1250	0	1250
S/G/Y/R/B/O	NT_009781	AC067735	39168990	3	chr12	NT_009781	AC018448	39268741	3	0	1465	0	1465
S/G/Y/R/B/O	NT_009781	AC018448	39268741	3	chr12	NT_009781	AC084373	39434789	3	2001	0	0	2001
S/G/Y/R/B/O	NT_009781	AC084373	39434789	3	chr12	NT_009781	AC090668	39617664	3	0	0	201	201
S/G/Y/R/B/O	NT_009781	AC084373	39434789	3			AC053543	39268741		56158	0	0	56158
S/G/Y/R/B/O	NT_009781	AC090668	39617664	3	chr12	NT_009781	AC121334	39728838	3	0	1999	0	1999
S/G/Y/R/B/O	NT_009781	AC090668	39617664	3			AC053543	39617664		68531	0	41921	110452
S/G/Y/R/B/O	NT_009781	AC121334	39728838	3	chr12	NT_009781	AC125491	39912686	3	2004	0	0	2004
S/G/Y/R/B/O	NT_009781	AC125491	39912686	3	chr12	NT_009781	AC121335	40021946	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC121335	40021946	3	chr12	NT_009781	AC121336	40098855	3	0	1797	0	1797
S/G/Y/R/B/O	NT_009781	AC121336	40098855	3	chr12	NT_009781	AC117403	40268453	3	14079	0	0	14079
S/G/Y/R/B/O	NT_009781	AC121336	40098855	3			AC025864	40098855		75208	0	6153	81361
S/G/Y/R/B/O	NT_009781	AC121336	40098855	3			AC133470	40021946		60604	0	79142	139746
S/G/Y/R/B/O	NT_009781	AC117403	40268453	3	chr12	NT_009781	AC079630	40375935	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC117403	40268453	3			AC025864	40021946		20138	0	7346	27484
S/G/Y/R/B/O	NT_009781	AC079630	40375935	3	chr12	NT_009781	AC084290	40552326	3	0	1300	0	1300
S/G/Y/R/B/O	NT_009781	AC079630	40375935	3			AC024737	40098855		136868	6740	8550	152158
S/G/Y/R/B/O	NT_009781	AC079630	40375935	3			AC092884	40552326		53517	9525	39308	102350
S/G/Y/R/B/O	NT_009781	AC084290	40552326	3	chr12	NT_009781	AC107023	40606026	3	0	1922	0	1922
S/G/Y/R/B/O	NT_009781	AC107023	40606026	3	chr12	NT_009781	AC024935	40754457	3	0	1927	0	1927
S/G/Y/R/B/O	NT_009781	AC107023	40606026	3			AC009943	40606026		149897	0	0	149897
S/G/Y/R/B/O	NT_009781	AC107023	40606026	3			AC016150	40606026		105847	0	0	105847
S/G/Y/R/B/O	NT_009781	AC024935	40754457	3	chr12	NT_009781	AC074030	40854558	3	2001	0	0	2001
S/G/Y/R/B/O	NT_009781	AC024935	40754457	3			AC016150	40552326		28269	0	0	28269
S/G/Y/R/B/O	NT_009781	AC074030	40854558	3	chr12	NT_009781	AC016144	41016257	3	62718	0	0	62718
S/G/Y/R/B/O	NT_009781	AC016144	41016257	3	chr12	NT_009781	AC129108	41131992	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC129108	41131992	3	chr12	NT_009781	AC015540	41142566	3	0	1998	0	1998
S/G/Y/R/B/O	NT_009781	AC015540	41142566	3	chr12	NT_009781	AC024900	41274349	3	0	0	203	203
S/G/Y/R/B/O	NT_009781	AC015540	41142566	3			AC120825	41274349		16547	24742	23769	65058
S/G/Y/R/B/O	NT_009781	AC024900	41274349	3	chr12	NT_009781	AC021651	41446116	3	0	0	207	207
S/G/Y/R/B/O	NT_009781	AC024900	41274349	3			AC011039	41131992		19734	0	0	19734
S/G/Y/R/B/O	NT_009781	AC024900	41274349	3			AC011836	41131992		87476	0	0	87476
S/G/Y/R/B/O	NT_009781	AC021651	41446116	3	chr12	NT_009781	AC073607	41513059	3	0	0	201	201
S/G/Y/R/B/O	NT_009781	AC021651	41446116	3			AC011039	41446116		67149	0	0	67149
S/G/Y/R/B/O	NT_009781	AC073607	41513059	3	chr12	NT_009781	AC090531	41677943	3	0	1844	0	1844
S/G/Y/R/B/O	NT_009781	AC073607	41513059	3			AC011039	41513059		95230	0	0	95230
S/G/Y/R/B/O	NT_009781	AC090531	41677943	3	chr12	NT_009781	AC018698	41880566	3	67165	0	0	67165
S/G/Y/R/B/O	NT_009781	AC090531	41677943	3			AC021137	41880566		109265	1665	70939	181869
S/G/Y/R/B/O	NT_009781	AC090531	41677943	3			AC025655	41880566		39062	3934	0	42996
S/G/Y/R/B/O	NT_009781	AC090531	41677943	3			AC079812	41513059		12568	0	0	12568
S/G/Y/R/B/O	NT_009781	AC090531	41677943	3			AC087895	41513059		153109	0	0	153109
S/G/Y/R/B/O	NT_009781	AC090531	41677943	3			AC092973	41513059		67156	0	0	67156
S/G/Y/R/B/O	NT_009781	AC018698	41880566	3	chr12	NT_009781	AC090630	42018033	3	16635	0	0	16635
S/G/Y/R/B/O	NT_009781	AC018698	41880566	3			AC021137	41513059		45844	1665	0	47509
S/G/Y/R/B/O	NT_009781	AC018698	41880566	3			AC025655	41513059		100125	3933	0	104058
S/G/Y/R/B/O	NT_009781	AC018698	41880566	3			AC087895	41513059		78555	0	0	78555
S/G/Y/R/B/O	NT_009781	AC018698	41880566	3			AC092973	42018033		205117	0	0	205117
S/G/Y/R/B/O	NT_009781	AC090630	42018033	3	chr12	NT_009781	AC006197	42185538	3	34477	0	0	34477
S/G/Y/R/B/O	NT_009781	AC090630	42018033	3			AC025880	41880566		94063	2197	58219	154479
S/G/Y/R/B/O	NT_009781	AC006197	42185538	3	chr12	NT_009781	AC078871	42305415	3	93382	0	0	93382
S/G/Y/R/B/O	NT_009781	AC006197	42185538	3			AC025880	41880566		26503	0	6669	33172
S/G/Y/R/B/O	NT_009781	AC078871	42305415	3	chr12	NT_009781	AC023513	42331153	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC023513	42331153	3	chr12	NT_009781	AC020629	42447094	3	0	0	169	169
S/G/Y/R/B/O	NT_009781	AC023513	42331153	3			AC024943	42447094		45622	0	10052	55674
S/G/Y/R/B/O	NT_009781	AC020629	42447094	3	chr12	NT_009781	AC079684	42589896	3	0	0	506	506
S/G/Y/R/B/O	NT_009781	AC020629	42447094	3			AC024943	42331153		25536	2950	2269	30755
S/G/Y/R/B/O	NT_009781	AC079684	42589896	3	chr12	NT_009781	AC079601	42685389	3	0	2004	0	2004
S/G/Y/R/B/O	NT_009781	AC079684	42589896	3			AC018906	42589896		25151	0	0	25151
S/G/Y/R/B/O	NT_009781	AC079601	42685389	3	chr12	NT_009781	AC079600	42779586	3	2041	0	0	2041
S/G/Y/R/B/O	NT_009781	AC079601	42685389	3			AC018906	42685389		10228	0	30780	41008
S/G/Y/R/B/O	NT_009781	AC079600	42779586	3	chr12	NT_009781	AC089982	42935940	3	2058	0	0	2058
S/G/Y/R/B/O	NT_009781	AC079600	42779586	3			AC018906	42589896		27784	0	1707	29491
S/G/Y/R/B/O	NT_009781	AC089982	42935940	3	chr12	NT_009781	AC119794	43107759	3	2000	0	0	2000
S/G/Y/R/B/O	NT_009781	AC089982	42935940	3			AC068036	42935940		129635	0	0	129635
S/G/Y/R/B/O	NT_009781	AC119794	43107759	3	chr12	NT_009781	AC068802	43110058	3	0	1998	0	1998
S/G/Y/R/B/O	NT_009781	AC068802	43110058	3	chr12	NT_009781	AC012038	43237410	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC068802	43110058	3			AC068036	42935940		18344	0	0	18344
S/G/Y/R/B/O	NT_009781	AC012038	43237410	3	chr12	NT_009781	AC079319	43310560	3	0	0	216	216
S/G/Y/R/B/O	NT_009781	AC079319	43310560	3	chr12	NT_009781	AC079603	43462793	3	35422	0	0	35422
S/G/Y/R/B/O	NT_009781	AC079319	43310560	3			AC060802	43237410		24505	2451	0	26956
S/G/Y/R/B/O	NT_009781	AC079603	43462793	3	chr12	NT_009781	AC107018	43592176	3	2006	0	0	2006
S/G/Y/R/B/O	NT_009781	AC079603	43462793	3			AC026637	43462793		49890	1929	0	51819
S/G/Y/R/B/O	NT_009781	AC079603	43462793	3			AC060802	43462793		111664	10084	13084	134832
S/G/Y/R/B/O	NT_009781	AC107018	43592176	3	chr12	NT_009781	AC120104	43695542	3	2039	0	0	2039
S/G/Y/R/B/O	NT_009781	AC107018	43592176	3			AC026637	43592176		32597	6840	26760	66197
S/G/Y/R/B/O	NT_009781	AC120104	43695542	3	chr12	NT_009781	AC090525	43803504	3	2671	0	0	2671
S/G/Y/R/B/O	NT_009781	AC120104	43695542	3			AC040949	43695542		75327	0	0	75327
S/G/Y/R/B/O	NT_009781	AC090525	43803504	3	chr12	NT_009781	AC016143	43975408	3	2003	0	0	2003
S/G/Y/R/B/O	NT_009781	AC090525	43803504	3			AC022198	43975408		39606	0	35662	75268
S/G/Y/R/B/O	NT_009781	AC090525	43803504	3			AC026831	43975408		107384	7459	0	114843
S/G/Y/R/B/O	NT_009781	AC016143	43975408	3	chr12	NT_009781	AC093012	44028090	3	2004	0	0	2004
S/G/Y/R/B/O	NT_009781	AC093012	44028090	3	chr12	NT_009781	AC076972	44144658	3	0	1998	0	1998
S/G/Y/R/B/O	NT_009781	AC093012	44028090	3			AC021719	43975408		113595	1966	0	115561
S/G/Y/R/B/O	NT_009781	AC093012	44028090	3			AC022198	43975408		12800	2321	0	15121
S/G/Y/R/B/O	NT_009781	AC093012	44028090	3			AC025567	43975408		46752	5044	21898	73694
S/G/Y/R/B/O	NT_009781	AC076972	44144658	3	chr12	NT_009781	AC024934	44304196	3	0	0	11766	11766
S/G/Y/R/B/O	NT_009781	AC076972	44144658	3			AC021719	44144658		41645	2078	6677	50400
S/G/Y/R/B/O	NT_009781	AC024934	44304196	3	chr12	NT_009781	AC073653	44497097	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC024934	44304196	3			AC027442	44028090		100938	4389	19247	124574
S/G/Y/R/B/O	NT_009781	AC073653	44497097	3	chr12	NT_009781	AC025030	44504696	3	0	0	206	206
S/G/Y/R/B/O	NT_009781	AC073653	44497097	3			AC008380	44144658		16436	0	0	16436
S/G/Y/R/B/O	NT_009781	AC073653	44497097	3			AC008503	44144658		16436	0	0	16436
S/G/Y/R/B/O	NT_009781	AC025030	44504696	3	chr12	NT_009781	AC025253	44675411	3	10743	0	0	10743
S/G/Y/R/B/O	NT_009781	AC025253	44675411	3	chr12	NT_009781	AC018923	44835359	3	0	0	198	198
S/G/Y/R/B/O	NT_009781	AC025253	44675411	3			AC019004	44835359		43387	0	0	43387
S/G/Y/R/B/O	NT_009781	AC018923	44835359	3	chr12	NT_009781	AC090012	44987963	3	0	1763	0	1763
S/G/Y/R/B/O	NT_009781	AC018923	44835359	3			AC019004	44504696		123540	0	0	123540
S/G/Y/R/B/O	NT_009781	AC018923	44835359	3			AC067892	44675411		28835	1528	10862	41225
S/G/Y/R/B/O	NT_009781	AC090012	44987963	3	chr12	NT_009781	AC079825	45126192	3	0	1742	0	1742
S/G/Y/R/B/O	NT_009781	AC090012	44987963	3			AC018583	44987963		69161	0	1382	70543
S/G/Y/R/B/O	NT_009781	AC090012	44987963	3			AC067892	44835359		28794	0	1682	30476
S/G/Y/R/B/O	NT_009781	AC079825	45126192	3	chr12	NT_009781	AC079033	45161325	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC079825	45126192	3			AC027596	45126192		12675	0	0	12675
S/G/Y/R/B/O	NT_009781	AC079033	45161325	3	chr12	NT_009781	AC089986	45309444	3	2005	0	0	2005
S/G/Y/R/B/O	NT_009781	AC079033	45161325	3			AC025526	44987963		34364	2339	40518	77221
S/G/Y/R/B/O	NT_009781	AC079033	45161325	3			AC027596	44987963		21457	0	0	21457
S/G/Y/R/B/O	NT_009781	AC089986	45309444	3	chr12	NT_009781	AC008127	45321066	3	0	1996	0	1996
S/G/Y/R/B/O	NT_009781	AC089986	45309444	3			AC025526	45321066		13549	0	0	13549
S/G/Y/R/B/O	NT_009781	AC008127	45321066	3	chr12	NT_009781	AC009248	45459693	3	0	0	1042	1042
S/G/Y/R/B/O	NT_009781	AC008127	45321066	3			AC025526	45459693		13199	4979	0	18178
S/G/Y/R/B/O	NT_009781	AC009248	45459693	3	chr12	NT_009781	AC009778	45628191	3	0	0	324	324
S/G/Y/R/B/O	NT_009781	AC009778	45628191	3	chr12	NT_009781	AC063924	45711054	3	0	474	0	474
S/G/Y/R/B/O	NT_009781	AC063924	45711054	3	chr12	NT_009781	AC079950	45740280	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC079950	45740280	3	chr12	NT_009781	AC008124	45873403	3	2000	0	0	2000
S/G/Y/R/B/O	NT_009781	AC008124	45873403	3	chr12	NT_009781	AC009777	46054789	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC009777	46054789	3	chr12	NT_009781	AC009464	46055139	3	0	0	296	296
S/G/Y/R/B/O	NT_009781	AC009464	46055139	3	chr12	NT_009781	AC000015	46200137	3	0	1928	0	1928
S/G/Y/R/B/O	NT_009781	AC009464	46055139	3			AC010172	46054789		22595	0	0	22595
S/G/Y/R/B/O	NT_009781	AC000015	46200137	3	chr12	NT_009781	AC084878	46264913	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC084878	46264913	3	chr12	NT_009781	AC016254	46352814	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC084878	46264913	3			AC010172	46055139		103619	0	0	103619
S/G/Y/R/B/O	NT_009781	AC016254	46352814	3	chr12	NT_009781	AC025031	46515143	3	27336	0	0	27336
S/G/Y/R/B/O	NT_009781	AC016254	46352814	3			AC021353	46055139		23182	0	0	23182
S/G/Y/R/B/O	NT_009781	AC025031	46515143	3	chr12	NT_009781	AC121337	46711482	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC025031	46515143	3			AC021353	46352814		117541	2336	0	119877
S/G/Y/R/B/O	NT_009781	AC025031	46515143	3			AC027292	46352814		26712	6959	40506	74177
S/G/Y/R/B/O	NT_009781	AC121337	46711482	3	chr12	NT_009781	AC008035	46820487	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC121337	46711482	3			AC091528	46352814		26454	5253	24078	55785
S/G/Y/R/B/O	NT_009781	AC008035	46820487	3	chr12	NT_009781	AC008014	46922483	3	2047	0	0	2047
S/G/Y/R/B/O	NT_009781	AC008014	46922483	3	chr12	NT_009781	AC080136	47088372	3	0	1998	0	1998
S/G/Y/R/B/O	NT_009781	AC008014	46922483	3			AC005854	46922483		27500	0	0	27500
S/G/Y/R/B/O	NT_009781	AC080136	47088372	3	chr12	NT_009781	AC079906	47137073	3	0	1996	0	1996
S/G/Y/R/B/O	NT_009781	AC080136	47088372	3			AC005854	47088372		12341	0	0	12341
S/G/Y/R/B/O	NT_009781	AC079906	47137073	3	chr12	NT_009781	AC004010	47315761	3	0	0	58180	58180
S/G/Y/R/B/O	NT_009781	AC004010	47315761	3	chr12	NT_009781	AC119044	47397350	3	30578	0	0	30578
S/G/Y/R/B/O	NT_009781	AC004010	47315761	3			AC073309	47088372		10200	0	1453	11653
S/G/Y/R/B/O	NT_009781	AC119044	47397350	3	chr12	NT_009781	AC008083	47475610	3	0	1997	0	1997
S/G/Y/R/B/O	NT_009781	AC119044	47397350	3			AC073309	47475610		16298	2011	37574	55883
S/G/Y/R/B/O	NT_009781	AC008083	47475610	3	chr12	NT_009781	AC003670	47665657	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC008083	47475610	3			AC004242	47475610		104665	0	0	104665
S/G/Y/R/B/O	NT_009781	AC008083	47475610	3			AC073309	47475610		16054	9398	32122	57574
S/G/Y/R/B/O	NT_009781	AC003670	47665657	3	chr12	NT_009781	AC003686	47705579	3	0	0	212	212
S/G/Y/R/B/O	NT_009781	AC003670	47665657	3			AC026222	47705579		88825	0	0	88825
S/G/Y/R/B/O	NT_009781	AC003686	47705579	3	chr12	NT_009781	AC004486	47818823	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC003686	47705579	3			AC026222	47665657		74274	0	0	74274
S/G/Y/R/B/O	NT_009781	AC004486	47818823	3	chr12	NT_009781	AC021658	47911346	3	17898	0	0	17898
S/G/Y/R/B/O	NT_009781	AC004486	47818823	3			AP001134	47911346		46713	5245	7669	59627
S/G/Y/R/B/O	NT_009781	AC021658	47911346	3	chr12	NT_009781	AC004241	47923848	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC004241	47923848	3
S/G/Y/R/B/O	NT_009781	AC004241	47923848	3			AP001134	47818823		38667	9262	5962	53891