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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_009509 | AC126614 | 57822601 | 1 | chr12 | NT_009509 | AC022506 | 57972925 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009509 | AC022506 | 57972925 | 3 | chr12 | NT_009509 | AC025165 | 58143056 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009509 | AC022506 | 57972925 | 3 |   |   | AC018805 | 57518567 | | 84968 | 5255 | 2005 | 92228 |
S/G/Y/R/B/O |
NT_009509 | AC022506 | 57972925 | 3 |   |   | AC018805 | 57518567 | | 84968 | 5255 | 2005 | 92228 |
S/G/Y/R/B/O |
NT_009509 | AC022506 | 57972925 | 3 |   |   | AC022366 | 57518567 | | 16406 | 0 | 9492 | 25898 |
S/G/Y/R/B/O |
NT_009509 | AC022506 | 57972925 | 3 |   |   | AC022366 | 57518567 | | 16406 | 0 | 9492 | 25898 |
S/G/Y/R/B/O |
NT_009509 | AC022506 | 57972925 | 3 |   |   | AC063917 | 58143056 | | 49286 | 3427 | 49768 | 102481 |
S/G/Y/R/B/O |
NT_009509 | AC022506 | 57972925 | 3 |   |   | AC063917 | 58143056 | | 49286 | 3427 | 49768 | 102481 |
S/G/Y/R/B/O |
NT_009509 | AC025165 | 58143056 | 3 | chr12 | NT_009509 | AC121759 | 58354600 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_009509 | AC025165 | 58143056 | 3 |   |   | AC022366 | 58143056 | | 13078 | 10156 | 10001 | 33235 |
S/G/Y/R/B/O |
NT_009509 | AC025165 | 58143056 | 3 |   |   | AC026340 | 57972925 | | 58721 | 0 | 2003 | 60724 |
S/G/Y/R/B/O |
NT_009509 | AC121759 | 58354600 | 3 | chr12 | NT_009509 | AC083805 | 58364895 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009509 | AC121759 | 58354600 | 3 |   |   | AC026340 | 58143056 | | 14275 | 0 | 0 | 14275 |
S/G/Y/R/B/O |
NT_009509 | AC083805 | 58364895 | 3 | chr12 | NT_009509 | AC084033 | 58469711 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_009509 | AC084033 | 58469711 | 3 | chr12 | NT_009509 | AC090643 | 58629730 | 3 | 0 | 0 | 1663 | 1663 |
S/G/Y/R/B/O |
NT_009509 | AC084033 | 58469711 | 3 |   |   | AC027633 | 58354600 | | 36701 | 0 | 32172 | 68873 |
S/G/Y/R/B/O |
NT_009509 | AC090643 | 58629730 | 3 | chr12 | NT_009509 | AC090631 | 58679884 | 3 | 0 | 1700 | 0 | 1700 |
S/G/Y/R/B/O |
NT_009509 | AC090631 | 58679884 | 3 | chr12 | NT_009509 | AC079034 | 58719318 | 3 | 2012 | 0 | 0 | 2012 |
S/G/Y/R/B/O |
NT_009509 | AC090631 | 58679884 | 3 |   |   | AC026924 | 58679884 | | 17416 | 0 | 1031 | 18447 |
S/G/Y/R/B/O |
NT_009509 | AC079034 | 58719318 | 3 | chr12 | NT_009509 | AC025420 | 58818907 | 3 | 0 | 2004 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009509 | AC079034 | 58719318 | 3 |   |   | AC026924 | 58818907 | | 35318 | 1772 | 14941 | 52031 |
S/G/Y/R/B/O |
NT_009509 | AC079034 | 58719318 | 3 |   |   | AC074261 | 58818907 | | 18604 | 3835 | 6134 | 28573 |
S/G/Y/R/B/O |
NT_009509 | AC025420 | 58818907 | 3 | chr12 | NT_009509 | AC025578 | 58911048 | 3 | 0 | 669 | 0 | 669 |
S/G/Y/R/B/O |
NT_009509 | AC025420 | 58818907 | 3 |   |   | AC074261 | 58911048 | | 55935 | 0 | 3157 | 59092 |
S/G/Y/R/B/O |
NT_009509 | AC025578 | 58911048 | 3 | chr12 | NT_009509 | AC078876 | 59023936 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009509 | AC025578 | 58911048 | 3 |   |   | AC074261 | 58818907 | | 13028 | 0 | 0 | 13028 |
S/G/Y/R/B/O |
NT_009509 | AC078876 | 59023936 | 3 | chr12 | NT_009509 | AC020637 | 59197344 | 3 | 31424 | 0 | 0 | 31424 |
S/G/Y/R/B/O |
NT_009509 | AC078876 | 59023936 | 3 |   |   | AC053532 | 59197344 | | 89764 | 4118 | 42883 | 136765 |
S/G/Y/R/B/O |
NT_009509 | AC020637 | 59197344 | 3 | chr12 | NT_009509 | AC078963 | 59343231 | 3 | 0 | 0 | 252 | 252 |
S/G/Y/R/B/O |
NT_009509 | AC020637 | 59197344 | 3 |   |   | AC025885 | 59197344 | | 30557 | 4328 | 8688 | 43573 |
S/G/Y/R/B/O |
NT_009509 | AC020637 | 59197344 | 3 |   |   | AC092885 | 59343231 | | 23322 | 4195 | 0 | 27517 |
S/G/Y/R/B/O |
NT_009509 | AC078963 | 59343231 | 3 | chr12 | NT_009509 | AC068305 | 59466237 | 3 | 0 | 0 | 205 | 205 |
S/G/Y/R/B/O |
NT_009509 | AC078963 | 59343231 | 3 |   |   | AC012231 | 59343231 | | 65266 | 0 | 0 | 65266 |
S/G/Y/R/B/O |
NT_009509 | AC078963 | 59343231 | 3 |   |   | AC018346 | 59343231 | | 81397 | 0 | 0 | 81397 |
S/G/Y/R/B/O |
NT_009509 | AC078963 | 59343231 | 3 |   |   | AC025885 | 59197344 | | 114212 | 4012 | 0 | 118224 |
S/G/Y/R/B/O |
NT_009509 | AC078963 | 59343231 | 3 |   |   | AC092885 | 59466237 | | 116283 | 2132 | 0 | 118415 |
S/G/Y/R/B/O |
NT_009509 | AC068305 | 59466237 | 3 | chr12 | NT_009509 | AC046129 | 59597843 | 3 | 69752 | 0 | 0 | 69752 |
S/G/Y/R/B/O |
NT_009509 | AC068305 | 59466237 | 3 |   |   | AC012231 | 59466237 | | 58786 | 0 | 11478 | 70264 |
S/G/Y/R/B/O |
NT_009509 | AC068305 | 59466237 | 3 |   |   | AC016101 | 59466237 | | 104856 | 8315 | 1336 | 114507 |
S/G/Y/R/B/O |
NT_009509 | AC068305 | 59466237 | 3 |   |   | AC018346 | 59466237 | | 56798 | 0 | 0 | 56798 |
S/G/Y/R/B/O |
NT_009509 | AC046129 | 59597843 | 3 | chr12 | NT_009509 | AC026351 | 59668622 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009509 | AC046129 | 59597843 | 3 |   |   | AC016101 | 59343231 | | 87066 | 8314 | 53327 | 148707 |
S/G/Y/R/B/O |
NT_009509 | AC046129 | 59597843 | 3 |   |   | AC064838 | 59343231 | | 49955 | 0 | 153 | 50108 |
S/G/Y/R/B/O |
NT_009509 | AC046129 | 59597843 | 3 |   |   | AC134350 | 59466237 | | 10080 | 5714 | 3561 | 19355 |
S/G/Y/R/B/O |
NT_009509 | AC026351 | 59668622 | 3 | chr12 | NT_009509 | AC128794 | 59845936 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_009509 | AC026351 | 59668622 | 3 |   |   | AC064838 | 59466237 | | 49611 | 2331 | 11753 | 63695 |
S/G/Y/R/B/O |
NT_009509 | AC128794 | 59845936 | 3 | chr12 | NT_009509 | AC108721 | 59894791 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009509 | AC108721 | 59894791 | 3 | chr12 | NT_009509 | AC119793 | 60109988 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009509 | AC108721 | 59894791 | 3 |   |   | AC025482 | 59668622 | | 94934 | 0 | 2571 | 97505 |
S/G/Y/R/B/O |
NT_009509 | AC108721 | 59894791 | 3 |   |   | AC060776 | 59668622 | | 84688 | 9039 | 7748 | 101475 |
S/G/Y/R/B/O |
NT_009509 | AC108721 | 59894791 | 3 |   |   | AC108360 | 59668622 | | 134330 | 0 | 0 | 134330 |
S/G/Y/R/B/O |
NT_009509 | AC119793 | 60109988 | 3 | chr12 | NT_009509 | AC079905 | 60181702 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009509 | AC079905 | 60181702 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_009509 | AC079905 | 60181702 | 3 |   |   | AC079318 | 60181702 | | 70781 | 0 | 32336 | 103117 |
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