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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_009681 | AC126615 | 95855377 | 3 | chr12 | NT_009681 | AC127165 | 95922934 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009681 | AC127165 | 95922934 | 3 | chr12 | NT_009681 | AC084879 | 96018403 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_009681 | AC127165 | 95922934 | 3 |   |   | AC024190 | 95922934 | | 31830 | 4969 | 1643 | 38442 |
S/G/Y/R/B/O |
NT_009681 | AC084879 | 96018403 | 3 | chr12 | NT_009681 | AC018475 | 96171987 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_009681 | AC084879 | 96018403 | 3 |   |   | AC024190 | 96171987 | | 84802 | 9750 | 20081 | 114633 |
S/G/Y/R/B/O |
NT_009681 | AC084879 | 96018403 | 3 |   |   | AC027568 | 96171987 | | 17617 | 7012 | 32437 | 57066 |
S/G/Y/R/B/O |
NT_009681 | AC018475 | 96171987 | 3 | chr12 | NT_009681 | AC008128 | 96320732 | 3 | 0 | 1982 | 0 | 1982 |
S/G/Y/R/B/O |
NT_009681 | AC018475 | 96171987 | 3 |   |   | AC027568 | 96320732 | | 12421 | 3729 | 3603 | 19753 |
S/G/Y/R/B/O |
NT_009681 | AC018475 | 96171987 | 3 |   |   | AC027568 | 96320732 | | 12421 | 3729 | 3603 | 19753 |
S/G/Y/R/B/O |
NT_009681 | AC008128 | 96320732 | 3 | chr12 | NT_009681 | AC090001 | 96447273 | 3 | 2060 | 0 | 0 | 2060 |
S/G/Y/R/B/O |
NT_009681 | AC008128 | 96320732 | 3 |   |   | AC134306 | 96447273 | | 39426 | 0 | 10052 | 49478 |
S/G/Y/R/B/O |
NT_009681 | AC090001 | 96447273 | 3 | chr12 | NT_009681 | AC126174 | 96652574 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_009681 | AC090001 | 96447273 | 3 |   |   | AC012115 | 96320732 | | 58381 | 7739 | 3284 | 69404 |
S/G/Y/R/B/O |
NT_009681 | AC090001 | 96447273 | 3 |   |   | AC134306 | 96652574 | | 70783 | 5136 | 29067 | 104986 |
S/G/Y/R/B/O |
NT_009681 | AC126174 | 96652574 | 3 | chr12 | NT_009681 | AC007298 | 96737253 | 3 | 0 | 1989 | 0 | 1989 |
S/G/Y/R/B/O |
NT_009681 | AC126174 | 96652574 | 3 |   |   | AC012115 | 96737253 | | 38877 | 7864 | 25241 | 71982 |
S/G/Y/R/B/O |
NT_009681 | AC126174 | 96652574 | 3 |   |   | AC012115 | 96737253 | | 38877 | 7864 | 25241 | 71982 |
S/G/Y/R/B/O |
NT_009681 | AC126174 | 96652574 | 3 |   |   | AC132155 | 96447273 | | 82390 | 0 | 0 | 82390 |
S/G/Y/R/B/O |
NT_009681 | AC126174 | 96652574 | 3 |   |   | AC132155 | 96447273 | | 82390 | 0 | 0 | 82390 |
S/G/Y/R/B/O |
NT_009681 | AC007298 | 96737253 | 3 | chr12 | NT_009681 | AC008149 | 96938825 | 3 | 0 | 0 | 154 | 154 |
S/G/Y/R/B/O |
NT_009681 | AC007298 | 96737253 | 3 |   |   | AC027777 | 96938825 | | 115306 | 2375 | 11144 | 128825 |
S/G/Y/R/B/O |
NT_009681 | AC008149 | 96938825 | 3 | chr12 | NT_009681 | AC125612 | 97035666 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009681 | AC125612 | 97035666 | 3 | chr12 | NT_009681 | AC013479 | 97169415 | 1 | 36450 | 3434 | 11056 | 50940 |
S/G/Y/R/B/O |
NT_009681 | AC125612 | 97035666 | 3 |   |   | AC021052 | 97169415 | | 39810 | 0 | 25675 | 65485 |
S/G/Y/R/B/O |
NT_009681 | AC013479 | 97169415 | 1 | chr12 | NT_009681 | AC113392 | 97220089 | 1 | 59053 | 0 | 0 | 59053 |
S/G/Y/R/B/O |
NT_009681 | AC013479 | 97169415 | 1 | chr12 | NT_009681 | AC007513 | 97331735 | 1 | 28145 | 1339 | 24038 | 53522 |
S/G/Y/R/B/O |
NT_009681 | AC013479 | 97169415 | 1 |   |   | AC021052 | 97331735 | | 31506 | 922 | 28497 | 60925 |
S/G/Y/R/B/O |
NT_009681 | AC113392 | 97220089 | 1 | chr12 | NT_009681 | AC007513 | 97331735 | 1 | 98694 | 0 | 65782 | 164476 |
S/G/Y/R/B/O |
NT_009681 | AC007513 | 97331735 | 1 | chr12 | NT_009681 | AC008118 | 97485594 | 3 | 26155 | 0 | 23705 | 49860 |
S/G/Y/R/B/O |
NT_009681 | AC007513 | 97331735 | 1 | chr12 | NT_009681 | AC013479 | 97169415 | 1 | 28145 | 1339 | 24038 | 53522 |
S/G/Y/R/B/O |
NT_009681 | AC007513 | 97331735 | 1 |   |   | AC021052 | 97169415 | | 12254 | 0 | 0 | 12254 |
S/G/Y/R/B/O |
NT_009681 | AC008118 | 97485594 | 3 | chr12 | NT_009681 | AC007564 | 97647940 | 3 | 0 | 0 | 1772 | 1772 |
S/G/Y/R/B/O |
NT_009681 | AC007564 | 97647940 | 3 | chr12 | NT_009681 | AC013417 | 97839991 | 3 | 0 | 0 | 200 | 200 |
S/G/Y/R/B/O |
NT_009681 | AC007564 | 97647940 | 3 |   |   | AC007553 | 97220089 | | 146509 | 0 | 0 | 146509 |
S/G/Y/R/B/O |
NT_009681 | AC013417 | 97839991 | 3 | chr12 | NT_009681 | AC007656 | 97953840 | 3 | 59355 | 0 | 0 | 59355 |
S/G/Y/R/B/O |
NT_009681 | AC007656 | 97953840 | 3 | chr12 | NT_009681 | AC007437 | 98065719 | 3 | 26621 | 0 | 0 | 26621 |
S/G/Y/R/B/O |
NT_009681 | AC007437 | 98065719 | 3 | chr12 | NT_009681 | AC007351 | 98218951 | 3 | 2029 | 0 | 0 | 2029 |
S/G/Y/R/B/O |
NT_009681 | AC007351 | 98218951 | 3 | chr12 | NT_009681 | AC018659 | 98412418 | 3 | 0 | 1666 | 0 | 1666 |
S/G/Y/R/B/O |
NT_009681 | AC018659 | 98412418 | 3 | chr12 | NT_009681 | AC007424 | 98588897 | 1 | 0 | 0 | 10228 | 10228 |
S/G/Y/R/B/O |
NT_009681 | AC007424 | 98588897 | 1 | chr12 | NT_009681 | AC018474 | 98670312 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009681 | AC007424 | 98588897 | 1 |   |   | AC091950 | 98412418 | | 24811 | 0 | 29398 | 54209 |
S/G/Y/R/B/O |
NT_009681 | AC018474 | 98670312 | 3 | chr12 | NT_009681 | AC007297 | 98842615 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009681 | AC018474 | 98670312 | 3 |   |   | AC073377 | 98412418 | | 22663 | 0 | 0 | 22663 |
S/G/Y/R/B/O |
NT_009681 | AC007297 | 98842615 | 3 | chr12 | NT_009681 | AC016152 | 99029222 | 3 | 22551 | 0 | 0 | 22551 |
S/G/Y/R/B/O |
NT_009681 | AC007297 | 98842615 | 3 |   |   | AC027232 | 99029222 | | 21746 | 3714 | 2119 | 27579 |
S/G/Y/R/B/O |
NT_009681 | AC016152 | 99029222 | 3 | chr12 | NT_009681 | AC008055 | 99125891 | 3 | 2002 | 0 | 0 | 2002 |
S/G/Y/R/B/O |
NT_009681 | AC016152 | 99029222 | 3 |   |   | AC022519 | 99125891 | | 23433 | 0 | 0 | 23433 |
S/G/Y/R/B/O |
NT_009681 | AC016152 | 99029222 | 3 |   |   | AC027232 | 99125891 | | 82843 | 3739 | 17560 | 104142 |
S/G/Y/R/B/O |
NT_009681 | AC008055 | 99125891 | 3 | chr12 | NT_009681 | AC007456 | 99320788 | 1 | 0 | 0 | 79494 | 79494 |
S/G/Y/R/B/O |
NT_009681 | AC008055 | 99125891 | 3 |   |   | AC022519 | 99029222 | | 104535 | 0 | 0 | 104535 |
S/G/Y/R/B/O |
NT_009681 | AC008055 | 99125891 | 3 |   |   | AC027232 | 99029222 | | 27171 | 0 | 4653 | 31824 |
S/G/Y/R/B/O |
NT_009681 | AC007456 | 99320788 | 1 | chr12 | NT_009681 | AC013418 | 99324971 | 1 | 16108 | 0 | 46692 | 62800 |
S/G/Y/R/B/O |
NT_009681 | AC013418 | 99324971 | 1 | chr12 | NT_009681 | AC013283 | 99450959 | 3 | 26386 | 0 | 2301 | 28687 |
S/G/Y/R/B/O |
NT_009681 | AC013283 | 99450959 | 3 | chr12 | NT_009681 | AC011248 | 99545160 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_009681 | AC011248 | 99545160 | 3 | chr12 | NT_009681 | AC008126 | 99656472 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009681 | AC011248 | 99545160 | 3 |   |   | AC026112 | 99450959 | | 25543 | 0 | 1963 | 27506 |
S/G/Y/R/B/O |
NT_009681 | AC008126 | 99656472 | 3 | chr12 | NT_009681 | AC021653 | 99829816 | 3 | 0 | 0 | 1830 | 1830 |
S/G/Y/R/B/O |
NT_009681 | AC008126 | 99656472 | 3 |   |   | AC026112 | 99829816 | | 63637 | 0 | 0 | 63637 |
S/G/Y/R/B/O |
NT_009681 | AC021653 | 99829816 | 3 | chr12 | NT_009681 | AC069437 | 99843394 | 3 | 0 | 0 | 1746 | 1746 |
S/G/Y/R/B/O |
NT_009681 | AC069437 | 99843394 | 3 | chr12 | NT_009681 | AC126616 | 99910509 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_009681 | AC126616 | 99910509 | 3 | chr12 | NT_009681 | AC117377 | 99923300 | 3 | 0 | 2024 | 0 | 2024 |
S/G/Y/R/B/O |
NT_009681 | AC117377 | 99923300 | 3 | chr12 | NT_009681 | AC079954 | 100028376 | 3 | 0 | 1977 | 0 | 1977 |
S/G/Y/R/B/O |
NT_009681 | AC079954 | 100028376 | 3 |   |   |   |   |   |   |   |   |   |
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