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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_009755 | AC068790 | 124170491 | 3 | chr12 | NT_009755 | AC026358 | 124334657 | 1 | 0 | 0 | 33981 | 33981 |
S/G/Y/R/B/O |
NT_009755 | AC068790 | 124170491 | 3 |   |   | AC024438 | 123721026 | | 106672 | 7021 | 14657 | 128350 |
S/G/Y/R/B/O |
NT_009755 | AC068790 | 124170491 | 3 |   |   | AC024438 | 123721026 | | 106672 | 7021 | 14657 | 128350 |
S/G/Y/R/B/O |
NT_009755 | AC026358 | 124334657 | 1 | chr12 | NT_009755 | AC073916 | 124512125 | 3 | 32594 | 0 | 0 | 32594 |
S/G/Y/R/B/O |
NT_009755 | AC026358 | 124334657 | 1 |   |   | AC024438 | 124334657 | | 25941 | 4569 | 1043 | 31553 |
S/G/Y/R/B/O |
NT_009755 | AC073916 | 124512125 | 3 | chr12 | NT_009755 | AC025685 | 124689632 | 1 | 16747 | 3674 | 2685 | 23106 |
S/G/Y/R/B/O |
NT_009755 | AC073916 | 124512125 | 3 |   |   | AC027706 | 124334657 | | 84095 | 35298 | 5709 | 125102 |
S/G/Y/R/B/O |
NT_009755 | AC025685 | 124689632 | 1 | chr12 | NT_009755 | AC069261 | 124718660 | 3 | 7560 | 2854 | 0 | 10414 |
S/G/Y/R/B/O |
NT_009755 | AC025685 | 124689632 | 1 | chr12 | NT_009755 | AC073592 | 124729878 | 3 | 79371 | 15186 | 21054 | 115611 |
S/G/Y/R/B/O |
NT_009755 | AC025685 | 124689632 | 1 |   |   | AC020773 | 124334657 | | 10317 | 877 | 1096 | 12290 |
S/G/Y/R/B/O |
NT_009755 | AC025685 | 124689632 | 1 |   |   | AC027706 | 124334657 | | 16560 | 17660 | 12084 | 46304 |
S/G/Y/R/B/O |
NT_009755 | AC069261 | 124718660 | 3 | chr12 | NT_009755 | AC073592 | 124729878 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009755 | AC073592 | 124729878 | 3 | chr12 | NT_009755 | AC073593 | 124889001 | 3 | 0 | 0 | 1515 | 1515 |
S/G/Y/R/B/O |
NT_009755 | AC073592 | 124729878 | 3 | chr12 | NT_009755 | AC025685 | 124689632 | 1 | 79371 | 15186 | 21054 | 115611 |
S/G/Y/R/B/O |
NT_009755 | AC073592 | 124729878 | 3 |   |   | AC020773 | 124729878 | | 18937 | 0 | 5867 | 24804 |
S/G/Y/R/B/O |
NT_009755 | AC073593 | 124889001 | 3 | chr12 | NT_009755 | AC126309 | 125040304 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_009755 | AC073593 | 124889001 | 3 |   |   | AC020773 | 124889001 | | 113790 | 1654 | 27457 | 142901 |
S/G/Y/R/B/O |
NT_009755 | AC126309 | 125040304 | 3 | chr12 | NT_009755 | AC093719 | 125160287 | 1 | 73864 | 0 | 0 | 73864 |
S/G/Y/R/B/O |
NT_009755 | AC093719 | 125160287 | 1 | chr12 | NT_009755 | AC127600 | 125285473 | 1 | 3137 | 5230 | 3899 | 12266 |
S/G/Y/R/B/O |
NT_009755 | AC127600 | 125285473 | 1 | chr12 | NT_009755 | AC093028 | 125336081 | 1 | 36812 | 6886 | 1609 | 45307 |
S/G/Y/R/B/O |
NT_009755 | AC127600 | 125285473 | 1 |   |   | AC122688 | 125160287 | | 64567 | 26465 | 11737 | 102769 |
S/G/Y/R/B/O |
NT_009755 | AC093028 | 125336081 | 1 | chr12 | NT_009755 | AC026370 | 125477959 | 2 | 83056 | 0 | 0 | 83056 |
S/G/Y/R/B/O |
NT_009755 | AC093028 | 125336081 | 1 | chr12 | NT_009755 | AC079170 | 125549224 | 1 | 72178 | 2313 | 13474 | 87965 |
S/G/Y/R/B/O |
NT_009755 | AC093028 | 125336081 | 1 |   |   | AC017011 | 73622875 | | 32226 | 2981 | 52194 | 87401 |
S/G/Y/R/B/O |
NT_009755 | AC093028 | 125336081 | 1 |   |   | AC122688 | 125549224 | | 60239 | 0 | 388 | 60627 |
S/G/Y/R/B/O |
NT_009755 | AC093028 | 125336081 | 1 |   |   | AL353755 | 125285473 | | 12759 | 15211 | 24295 | 52265 |
S/G/Y/R/B/O |
NT_009755 | AC026370 | 125477959 | 2 | chr12 | NT_009755 | AC079170 | 125549224 | 1 | 81041 | 0 | 13619 | 94660 |
S/G/Y/R/B/O |
NT_009755 | AC026370 | 125477959 | 2 |   |   | AC017011 | 125285473 | | 38055 | 2981 | 52112 | 93148 |
S/G/Y/R/B/O |
NT_009755 | AC026370 | 125477959 | 2 |   |   | AC024734 | 125285473 | | 21618 | 0 | 13278 | 34896 |
S/G/Y/R/B/O |
NT_009755 | AC079170 | 125549224 | 1 | chr12 | NT_009755 | AC073618 | 125671093 | 1 | 97684 | 0 | 0 | 97684 |
S/G/Y/R/B/O |
NT_009755 | AC079170 | 125549224 | 1 | chr12 | NT_009755 | AC093028 | 125336081 | 1 | 72178 | 2313 | 13474 | 87965 |
S/G/Y/R/B/O |
NT_009755 | AC079170 | 125549224 | 1 |   |   | AC017011 | 125336081 | | 132962 | 7323 | 50704 | 190989 |
S/G/Y/R/B/O |
NT_009755 | AC079170 | 125549224 | 1 |   |   | AC021871 | 125336081 | | 29997 | 1310 | 27050 | 58357 |
S/G/Y/R/B/O |
NT_009755 | AC079170 | 125549224 | 1 |   |   | AC024734 | 125336081 | | 97218 | 6319 | 20001 | 123538 |
S/G/Y/R/B/O |
NT_009755 | AC073618 | 125671093 | 1 | chr12 | NT_009755 | AC004806 | 125738035 | 3 | 19930 | 0 | 0 | 19930 |
S/G/Y/R/B/O |
NT_009755 | AC073618 | 125671093 | 1 |   |   | AC017011 | 125738035 | | 76819 | 2008 | 14560 | 93387 |
S/G/Y/R/B/O |
NT_009755 | AC073618 | 125671093 | 1 |   |   | AC021871 | 125738035 | | 66711 | 2581 | 53077 | 122369 |
S/G/Y/R/B/O |
NT_009755 | AC073618 | 125671093 | 1 |   |   | AC024734 | 125738035 | | 101258 | 12156 | 5985 | 119399 |
S/G/Y/R/B/O |
NT_009755 | AC004806 | 125738035 | 3 | chr12 | NT_009755 | AC005146 | 125867475 | 3 | 0 | 499 | 0 | 499 |
S/G/Y/R/B/O |
NT_009755 | AC005146 | 125867475 | 3 | chr12 | NT_009755 | AC005252 | 126024629 | 3 | 0 | 0 | 189 | 189 |
S/G/Y/R/B/O |
NT_009755 | AC005252 | 126024629 | 3 | chr12 | NT_009755 | AC005186 | 126150767 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009755 | AC005252 | 126024629 | 3 |   |   | AC069398 | 125867475 | | 59850 | 2682 | 0 | 62532 |
S/G/Y/R/B/O |
NT_009755 | AC005186 | 126150767 | 3 | chr12 | NT_009755 | AC005858 | 126249417 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009755 | AC005186 | 126150767 | 3 |   |   | AC069398 | 125867475 | | 70295 | 2682 | 31497 | 104474 |
S/G/Y/R/B/O |
NT_009755 | AC005858 | 126249417 | 3 | chr12 | NT_009755 | AC005888 | 126384574 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009755 | AC005888 | 126384574 | 3 | chr12 | NT_009755 | AC005864 | 126414157 | 3 | 0 | 413 | 0 | 413 |
S/G/Y/R/B/O |
NT_009755 | AC005864 | 126414157 | 3 | chr12 | NT_009755 | AC005885 | 126453095 | 3 | 0 | 0 | 326 | 326 |
S/G/Y/R/B/O |
NT_009755 | AC005885 | 126453095 | 3 | chr12 | NT_009755 | AC007368 | 126537549 | 3 | 0 | 0 | 201 | 201 |
S/G/Y/R/B/O |
NT_009755 | AC007368 | 126537549 | 3 | chr12 | NT_009755 | AC005868 | 126631372 | 3 | 0 | 0 | 200 | 200 |
S/G/Y/R/B/O |
NT_009755 | AC005868 | 126631372 | 3 | chr12 | NT_009755 | AC006065 | 126727351 | 3 | 0 | 0 | 199 | 199 |
S/G/Y/R/B/O |
NT_009755 | AC006065 | 126727351 | 3 | chr12 | NT_009755 | AC069235 | 126918285 | 3 | 0 | 793 | 0 | 793 |
S/G/Y/R/B/O |
NT_009755 | AC069235 | 126918285 | 3 | chr12 | NT_009755 | AC048343 | 127007990 | 3 | 0 | 0 | 228 | 228 |
S/G/Y/R/B/O |
NT_009755 | AC048343 | 127007990 | 3 | chr12 | NT_009755 | AC127163 | 127041352 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_009755 | AC127163 | 127041352 | 3 | chr12 | NT_009755 | AC078878 | 127080693 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_009755 | AC127163 | 127041352 | 3 |   |   | AC127895 | 127080693 | | 41232 | 0 | 0 | 41232 |
S/G/Y/R/B/O |
NT_009755 | AC078878 | 127080693 | 3 | chr12 | NT_009755 | AC011565 | 127251084 | 1 | 37050 | 0 | 0 | 37050 |
S/G/Y/R/B/O |
NT_009755 | AC078878 | 127080693 | 3 |   |   | AC007675 | 127080693 | | 129833 | 0 | 0 | 129833 |
S/G/Y/R/B/O |
NT_009755 | AC078878 | 127080693 | 3 |   |   | AC020640 | 127251084 | | 154787 | 0 | 0 | 154787 |
S/G/Y/R/B/O |
NT_009755 | AC011565 | 127251084 | 1 | chr12 | NT_009755 | AC079949 | 127272353 | 1 | 47669 | 0 | 3949 | 51618 |
S/G/Y/R/B/O |
NT_009755 | AC011565 | 127251084 | 1 |   |   | AC007675 | 127041352 | | 73241 | 3556 | 0 | 76797 |
S/G/Y/R/B/O |
NT_009755 | AC011565 | 127251084 | 1 |   |   | AC020640 | 127041352 | | 20723 | 0 | 0 | 20723 |
S/G/Y/R/B/O |
NT_009755 | AC011565 | 127251084 | 1 |   |   | AC034280 | 127041352 | | 15718 | 3265 | 0 | 18983 |
S/G/Y/R/B/O |
NT_009755 | AC011565 | 127251084 | 1 |   |   | AC090117 | 127272353 | | 56455 | 4873 | 71171 | 132499 |
S/G/Y/R/B/O |
NT_009755 | AC079949 | 127272353 | 1 | chr12 | NT_009755 | AC073913 | 127418115 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009755 | AC079949 | 127272353 | 1 |   |   | AC007675 | 127272353 | | 14508 | 0 | 95 | 14603 |
S/G/Y/R/B/O |
NT_009755 | AC079949 | 127272353 | 1 |   |   | AC016836 | 127251084 | | 56283 | 0 | 0 | 56283 |
S/G/Y/R/B/O |
NT_009755 | AC079949 | 127272353 | 1 |   |   | AC034280 | 127251084 | | 99765 | 7468 | 1194 | 108427 |
S/G/Y/R/B/O |
NT_009755 | AC079949 | 127272353 | 1 |   |   | AC090117 | 127251084 | | 43552 | 0 | 27057 | 70609 |
S/G/Y/R/B/O |
NT_009755 | AC079949 | 127272353 | 1 |   |   | AC130438 | 127251084 | | 38532 | 0 | 0 | 38532 |
S/G/Y/R/B/O |
NT_009755 | AC073913 | 127418115 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_009755 | AC073913 | 127418115 | 3 |   |   | AC016836 | 127251084 | | 99165 | 0 | 22335 | 121500 |
S/G/Y/R/B/O |
NT_009755 | AC073913 | 127418115 | 3 |   |   | AC023778 | 127251084 | | 12671 | 10970 | 16722 | 40363 |
S/G/Y/R/B/O |
NT_009755 | AC073913 | 127418115 | 3 |   |   | AC034280 | 127251084 | | 85158 | 0 | 1291 | 86449 |
S/G/Y/R/B/O |
NT_009755 | AC073913 | 127418115 | 3 |   |   | AC048347 | 127251084 | | 27765 | 0 | 2359 | 30124 |
S/G/Y/R/B/O |
NT_009755 | AC073913 | 127418115 | 3 |   |   | AC130438 | 127251084 | | 95431 | 0 | 53030 | 148461 |
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