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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_009770 | AC011596 | 109269547 | 3 | chr12 | NT_009770 | AC007637 | 109369966 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009770 | AC007637 | 109369966 | 3 | chr12 | NT_009770 | AC012384 | 109545836 | 3 | 0 | 0 | 331 | 331 |
S/G/Y/R/B/O |
NT_009770 | AC012384 | 109545836 | 3 | chr12 | NT_009770 | AC007570 | 109715623 | 3 | 0 | 0 | 274 | 274 |
S/G/Y/R/B/O |
NT_009770 | AC007570 | 109715623 | 3 | chr12 | NT_009770 | AC007623 | 109883028 | 3 | 2021 | 0 | 0 | 2021 |
S/G/Y/R/B/O |
NT_009770 | AC007623 | 109883028 | 3 | chr12 | NT_009770 | AC007834 | 109968208 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009770 | AC007834 | 109968208 | 3 | chr12 | NT_009770 | AC084876 | 110174762 | 3 | 0 | 2004 | 0 | 2004 |
S/G/Y/R/B/O |
NT_009770 | AC007834 | 109968208 | 3 |   |   | AC040979 | 109715623 | | 34338 | 0 | 7606 | 41944 |
S/G/Y/R/B/O |
NT_009770 | AC084876 | 110174762 | 3 | chr12 | NT_009770 | AC007546 | 110289393 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_009770 | AC084876 | 110174762 | 3 |   |   | AC040979 | 109968208 | | 77077 | 6812 | 2096 | 85985 |
S/G/Y/R/B/O |
NT_009770 | AC007546 | 110289393 | 3 | chr12 | NT_009770 | AC009730 | 110455754 | 1 | 0 | 0 | 87333 | 87333 |
S/G/Y/R/B/O |
NT_009770 | AC007546 | 110289393 | 3 |   |   | AC018724 | 110455754 | | 26365 | 5175 | 0 | 31540 |
S/G/Y/R/B/O |
NT_009770 | AC007546 | 110289393 | 3 |   |   | AC040979 | 110455754 | | 15263 | 2342 | 0 | 17605 |
S/G/Y/R/B/O |
NT_009770 | AC009730 | 110455754 | 1 | chr12 | NT_009770 | AC006088 | 110524042 | 3 | 0 | 0 | 51577 | 51577 |
S/G/Y/R/B/O |
NT_009770 | AC009730 | 110455754 | 1 |   |   | AC018724 | 107621917 | | 63036 | 5175 | 18631 | 86842 |
S/G/Y/R/B/O |
NT_009770 | AC006088 | 110524042 | 3 | chr12 | NT_009770 | AC005907 | 110646647 | 3 | 0 | 0 | 206 | 206 |
S/G/Y/R/B/O |
NT_009770 | AC006088 | 110524042 | 3 |   |   | AC018724 | 110455754 | | 14415 | 0 | 1993 | 16408 |
S/G/Y/R/B/O |
NT_009770 | AC005907 | 110646647 | 3 | chr12 | NT_009770 | AC002350 | 110682641 | 3 | 0 | 0 | 200 | 200 |
S/G/Y/R/B/O |
NT_009770 | AC002350 | 110682641 | 3 | chr12 | NT_009770 | AC002353 | 110849658 | 1 | 0 | 3771 | 14261 | 18032 |
S/G/Y/R/B/O |
NT_009770 | AC002350 | 110682641 | 3 |   |   | AC026856 | 110646647 | | 25703 | 1580 | 0 | 27283 |
S/G/Y/R/B/O |
NT_009770 | AC002353 | 110849658 | 1 | chr12 | NT_009770 | AC002979 | 110856338 | 1 | 0 | 1496 | 35170 | 36666 |
S/G/Y/R/B/O |
NT_009770 | AC002353 | 110849658 | 1 | chr12 | NT_009770 | AC002395 | 111471475 | 3 | 19944 | 0 | 8530 | 28474 |
S/G/Y/R/B/O |
NT_009770 | AC002353 | 110849658 | 1 | chr12 | NT_009770 | AC002395 | 111471475 | 3 | 19944 | 0 | 8530 | 28474 |
S/G/Y/R/B/O |
NT_009770 | AC002353 | 110849658 | 1 | chr12 | NT_009770 | AC005805 | 110874790 | 1 | 78729 | 8961 | 61441 | 149131 |
S/G/Y/R/B/O |
NT_009770 | AC002353 | 110849658 | 1 | chr12 | NT_009770 | AC005805 | 110874790 | 1 | 78729 | 8961 | 61441 | 149131 |
S/G/Y/R/B/O |
NT_009770 | AC002353 | 110849658 | 1 | chr12 | NT_009770 | AC005805 | 110874790 | 1 | 78729 | 8961 | 61441 | 149131 |
S/G/Y/R/B/O |
NT_009770 | AC002353 | 110849658 | 1 | chr12 | NT_009770 | AC005805 | 110874790 | 1 | 78729 | 8961 | 61441 | 149131 |
S/G/Y/R/B/O |
NT_009770 | AC002353 | 110849658 | 1 |   |   | AC002989 | 110856338 | | 14036 | 0 | 811 | 14847 |
S/G/Y/R/B/O |
NT_009770 | AC002353 | 110849658 | 1 |   |   | AC002989 | 110856338 | | 14036 | 0 | 811 | 14847 |
S/G/Y/R/B/O |
NT_009770 | AC002979 | 110856338 | 1 | chr12 | NT_009770 | AC005805 | 110874790 | 1 | 20540 | 3031 | 50894 | 74465 |
S/G/Y/R/B/O |
NT_009770 | AC002979 | 110856338 | 1 | chr12 | NT_009770 | AC002352 | 111246168 | 3 | 59792 | 0 | 965 | 60757 |
S/G/Y/R/B/O |
NT_009770 | AC002979 | 110856338 | 1 | chr12 | NT_009770 | AC002352 | 111246168 | 3 | 59792 | 0 | 965 | 60757 |
S/G/Y/R/B/O |
NT_009770 | AC002979 | 110856338 | 1 |   |   | AC002989 | 110849658 | | 14039 | 0 | 922 | 14961 |
S/G/Y/R/B/O |
NT_009770 | AC002979 | 110856338 | 1 |   |   | AC002989 | 110849658 | | 14039 | 0 | 922 | 14961 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 | chr12 | NT_009770 | AC002375 | 110892122 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 | chr12 | NT_009770 | AC002353 | 110849658 | 1 | 78729 | 8961 | 61441 | 149131 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 | chr12 | NT_009770 | AC002353 | 110849658 | 1 | 78729 | 8961 | 61441 | 149131 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 | chr12 | NT_009770 | AC002353 | 110849658 | 1 | 78729 | 8961 | 61441 | 149131 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 | chr12 | NT_009770 | AC002353 | 110849658 | 1 | 78729 | 8961 | 61441 | 149131 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 | chrX | NT_025323 | AC003659 | 27630223 | 1 | 12011 | 0 | 929 | 12940 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 | chrX | NT_025323 | AC003659 | 27630223 | 1 | 12011 | 0 | 929 | 12940 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 | chrX | NT_025323 | AC003659 | 27630223 | 1 | 12011 | 0 | 929 | 12940 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 | chrX | NT_025323 | AC003659 | 27630223 | 1 | 12011 | 0 | 929 | 12940 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 | chr12 | NT_009775 | AC004086 | 112316675 | 1 | 12038 | 0 | 1377 | 13415 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 | chr12 | NT_009775 | AC004086 | 112316675 | 1 | 12038 | 0 | 1377 | 13415 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 | chr12 | NT_009775 | AC004086 | 112316675 | 1 | 12038 | 0 | 1377 | 13415 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 | chr12 | NT_009775 | AC004086 | 112316675 | 1 | 12038 | 0 | 1377 | 13415 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 |   |   | AC002370 | 110849658 | | 12038 | 0 | 1158 | 13196 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 |   |   | AC002370 | 110849658 | | 12038 | 0 | 1158 | 13196 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 |   |   | AC002405 | 111471475 | | 18250 | 0 | 21015 | 39265 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 |   |   | AC002405 | 111471475 | | 18250 | 0 | 21015 | 39265 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 |   |   | AC002989 | 110856338 | | 11999 | 0 | 84 | 12083 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 |   |   | AC002989 | 110856338 | | 11999 | 0 | 84 | 12083 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 |   |   | AC026856 | 39562676 | | 11043 | 6750 | 0 | 17793 |
S/G/Y/R/B/O |
NT_009770 | AC005805 | 110874790 | 1 |   |   | AC026856 | 39562676 | | 11043 | 6750 | 0 | 17793 |
S/G/Y/R/B/O |
NT_009770 | AC002375 | 110892122 | 3 | chr12 | NT_009770 | AC002351 | 110994701 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009770 | AC002351 | 110994701 | 3 | chr12 | NT_009770 | AC002978 | 111143798 | 3 | 0 | 0 | 221 | 221 |
S/G/Y/R/B/O |
NT_009770 | AC002978 | 111143798 | 3 | chr12 | NT_009770 | AC002352 | 111246168 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009770 | AC002352 | 111246168 | 3 | chr12 | NT_009770 | AC002395 | 111471475 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009770 | AC002352 | 111246168 | 3 | chr12 | NT_009770 | AC002979 | 110856338 | 1 | 59792 | 0 | 965 | 60757 |
S/G/Y/R/B/O |
NT_009770 | AC002352 | 111246168 | 3 | chr12 | NT_009770 | AC002979 | 110856338 | 1 | 59792 | 0 | 965 | 60757 |
S/G/Y/R/B/O |
NT_009770 | AC002395 | 111471475 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_009770 | AC002395 | 111471475 | 3 | chr12 | NT_009770 | AC002353 | 110849658 | 1 | 19944 | 0 | 8530 | 28474 |
S/G/Y/R/B/O |
NT_009770 | AC002395 | 111471475 | 3 | chr12 | NT_009770 | AC002353 | 110849658 | 1 | 19944 | 0 | 8530 | 28474 |
S/G/Y/R/B/O |
NT_009770 | AC002395 | 111471475 | 3 |   |   | AC004085 | 110849658 | | 56069 | 0 | 29106 | 85175 |
S/G/Y/R/B/O |
NT_009770 | AC002395 | 111471475 | 3 |   |   | AC004085 | 110849658 | | 56069 | 0 | 29106 | 85175 |
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