Chromosome 12 - Clone Overlaps

Chromosome 12 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037806	NT_009759	NT_033253	NT_009731	NT_035206	NT_024397	NT_009714	NT_035211
NT_009700	NT_035212	NT_033254	NT_033255	NT_024371	NT_024380	NT_024352	NT_009781
NT_009526	NT_026397	NT_024417	NT_009782	NT_009609	NT_030118	NT_009458	NT_009509
NT_009441	NT_009711	NT_035222	NT_009616	NT_029419	NT_009540	NT_009528	NT_024381
NT_024460	NT_024375	NT_015310	NT_009551	NT_019546	NT_024356	NT_009538	NT_025864
NT_037807	NT_030122	NT_019555	NT_009513	NT_009575	NT_009681	NT_009743	NT_037808
NT_035235	NT_009770	NT_009775	NT_037809	NT_037810	NT_009487	NT_009438	NT_009464
NT_033248	NT_037811	NT_009755	NT_009534	NT_024376	NT_009523	NT_035242	NT_009482
NT_035243	NT_027131	NT_024477	NT_009455

NT_009551

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_009551	AC068045	76807424	1	chr12	NT_009551	AC093718	76860177	3	117908	4186	3546	125640
S/G/Y/R/B/O	NT_009551	AC068045	76807424	1	chr12	NT_009551	AC117491	77021081	3	10171	0	0	10171
S/G/Y/R/B/O	NT_009551	AC068045	76807424	1			AC017108	76187224		71544	1904	21798	95246
S/G/Y/R/B/O	NT_009551	AC068045	76807424	1			AC126563	77021081		89739	0	4257	93996
S/G/Y/R/B/O	NT_009551	AC093718	76860177	3	chr12	NT_009551	AC117491	77021081	3	2004	0	0	2004
S/G/Y/R/B/O	NT_009551	AC093718	76860177	3			AC017108	77021081		46599	1904	0	48503
S/G/Y/R/B/O	NT_009551	AC093718	76860177	3			AC126563	77021081		104608	0	0	104608
S/G/Y/R/B/O	NT_009551	AC117491	77021081	3	chr12	NT_009551	AC122687	77134602	3	2002	0	0	2002
S/G/Y/R/B/O	NT_009551	AC117491	77021081	3	chr12	NT_009551	AC068045	76807424	1	10171	0	0	10171
S/G/Y/R/B/O	NT_009551	AC117491	77021081	3			AC017108	77021081		22161	0	10188	32349
S/G/Y/R/B/O	NT_009551	AC117491	77021081	3			AC073047	76807424		29855	3633	35214	68702
S/G/Y/R/B/O	NT_009551	AC122687	77134602	3	chr12	NT_009551	AC124943	77274011	3	2000	0	0	2000
S/G/Y/R/B/O	NT_009551	AC122687	77134602	3			AC053484	77134602		57207	0	0	57207
S/G/Y/R/B/O	NT_009551	AC124943	77274011	3	chr12	NT_009551	AC107032	77319477	3	0	0	0	0
S/G/Y/R/B/O	NT_009551	AC124943	77274011	3			AC053484	77274011		29602	1888	0	31490
S/G/Y/R/B/O	NT_009551	AC107032	77319477	3	chr12	NT_009551	AC093014	77479988	3	0	2068	0	2068
S/G/Y/R/B/O	NT_009551	AC107032	77319477	3			AC021972	77134602		25234	10730	6022	41986
S/G/Y/R/B/O	NT_009551	AC107032	77319477	3			AC023961	77134602		53745	2816	64080	120641
S/G/Y/R/B/O	NT_009551	AC093014	77479988	3	chr12	NT_009551	AC124784	77575415	3	0	1659	0	1659
S/G/Y/R/B/O	NT_009551	AC093014	77479988	3			AC021972	77479988		50196	5184	7281	62661
S/G/Y/R/B/O	NT_009551	AC124784	77575415	3	chr12	NT_009551	AC025161	77717756	3	0	0	0	0
S/G/Y/R/B/O	NT_009551	AC124784	77575415	3			AC017057	77575415		12879	0	0	12879
S/G/Y/R/B/O	NT_009551	AC124784	77575415	3			AC021804	77575415		17891	0	0	17891
S/G/Y/R/B/O	NT_009551	AC124784	77575415	3			AC025567	77575415		139722	0	0	139722
S/G/Y/R/B/O	NT_009551	AC025161	77717756	3	chr12	NT_009551	AC079030	77799021	3	2003	0	0	2003
S/G/Y/R/B/O	NT_009551	AC025161	77717756	3			AC017057	77479988		55601	1841	0	57442
S/G/Y/R/B/O	NT_009551	AC025161	77717756	3			AC021804	77479988		18458	0	0	18458
S/G/Y/R/B/O	NT_009551	AC025161	77717756	3			AC026119	77479988		18038	0	0	18038
S/G/Y/R/B/O	NT_009551	AC079030	77799021	3	chr12	NT_009551	AC068797	77896257	3	0	0	0	0
S/G/Y/R/B/O	NT_009551	AC079030	77799021	3			AC017057	77799021		12191	0	14985	27176
S/G/Y/R/B/O	NT_009551	AC079030	77799021	3			AC021804	77799021		37424	0	0	37424
S/G/Y/R/B/O	NT_009551	AC079030	77799021	3			AC026119	77717756		71843	8088	12231	92162
S/G/Y/R/B/O	NT_009551	AC068797	77896257	3	chr12	NT_009551	AC068771	78030514	3	0	1994	0	1994
S/G/Y/R/B/O	NT_009551	AC068797	77896257	3			AC026119	77717756		11047	7751	0	18798
S/G/Y/R/B/O	NT_009551	AC068771	78030514	3	chr12	NT_009551	AC073591	78068486	3	2006	0	0	2006
S/G/Y/R/B/O	NT_009551	AC073591	78068486	3	chr12	NT_009551	AC068800	78174508	3	18223	0	0	18223
S/G/Y/R/B/O	NT_009551	AC068800	78174508	3	chr12	NT_009551	AC073528	78245437	3	2009	0	0	2009
S/G/Y/R/B/O	NT_009551	AC073528	78245437	3	chr12	NT_009551	AC073907	78410465	3	67126	0	0	67126
S/G/Y/R/B/O	NT_009551	AC073528	78245437	3			AC024628	78068486		101313	15002	1473	117788
S/G/Y/R/B/O	NT_009551	AC073528	78245437	3			AC073652	78174508		167011	0	0	167011
S/G/Y/R/B/O	NT_009551	AC073907	78410465	3	chr12	NT_009551	AC068780	78478460	3	2004	0	0	2004
S/G/Y/R/B/O	NT_009551	AC073907	78410465	3	chr12	NT_009551	AC073552	78582292	1	18913	0	1669	20582
S/G/Y/R/B/O	NT_009551	AC073907	78410465	3			AC024628	78410465		43565	1632	9932	55129
S/G/Y/R/B/O	NT_009551	AC073907	78410465	3			AC073652	78582292		67108	0	0	67108
S/G/Y/R/B/O	NT_009551	AC068780	78478460	3	chr12	NT_009551	AC073552	78582292	1	71036	1892	15524	88452
S/G/Y/R/B/O	NT_009551	AC073552	78582292	1	chr12	NT_009551	AC078822	78593675	3	20977	0	10603	31580
S/G/Y/R/B/O	NT_009551	AC073552	78582292	1	chr12	NT_009551	AC073907	78410465	3	18913	0	1669	20582
S/G/Y/R/B/O	NT_009551	AC073552	78582292	1			AC022268	78410465		10965	0	10567	21532
S/G/Y/R/B/O	NT_009551	AC078822	78593675	3	chr12	NT_009551	AC090020	78760500	3	2084	0	0	2084
S/G/Y/R/B/O	NT_009551	AC078822	78593675	3			AC022268	78593675		156466	0	0	156466
S/G/Y/R/B/O	NT_009551	AC078822	78593675	3			AC098564	78760500		134062	0	0	134062
S/G/Y/R/B/O	NT_009551	AC078822	78593675	3			AC110996	78760500		31537	7364	28013	66914
S/G/Y/R/B/O	NT_009551	AC090020	78760500	3	chr12	NT_009551	AC073571	78767417	3	0	1800	0	1800
S/G/Y/R/B/O	NT_009551	AC073571	78767417	3	chr12	NT_009551	AC073608	78909848	3	2003	0	0	2003
S/G/Y/R/B/O	NT_009551	AC073571	78767417	3			AC017064	78593675		70068	2143	18536	90747
S/G/Y/R/B/O	NT_009551	AC073571	78767417	3			AC021380	78593675		88749	0	1432	90181
S/G/Y/R/B/O	NT_009551	AC073571	78767417	3			AC022268	78593675		30998	0	0	30998
S/G/Y/R/B/O	NT_009551	AC073571	78767417	3			AC098564	78760500		65670	0	0	65670
S/G/Y/R/B/O	NT_009551	AC073571	78767417	3			AC110996	78760500		17405	2755	0	20160
S/G/Y/R/B/O	NT_009551	AC073608	78909848	3	chr12	NT_009551	AC128707	79019027	3	0	0	0	0
S/G/Y/R/B/O	NT_009551	AC073608	78909848	3			AC017064	78760500		17474	0	37930	55404
S/G/Y/R/B/O	NT_009551	AC073608	78909848	3			AC021380	78760500		55953	0	3782	59735
S/G/Y/R/B/O	NT_009551	AC073608	78909848	3			AC041032	78760500		21603	2697	10522	34822
S/G/Y/R/B/O	NT_009551	AC073608	78909848	3			AC073044	78760500		37162	7148	1054	45364
S/G/Y/R/B/O	NT_009551	AC128707	79019027	3	chr12	NT_009551	AC130415	79138569	3	2004	0	0	2004
S/G/Y/R/B/O	NT_009551	AC128707	79019027	3	chr12	NT_009551	AC010951	79181744	1	49773	0	14739	64512
S/G/Y/R/B/O	NT_009551	AC128707	79019027	3			AC018372	79181744		64066	0	2681	66747
S/G/Y/R/B/O	NT_009551	AC128707	79019027	3			AC041032	79181744		94481	0	18963	113444
S/G/Y/R/B/O	NT_009551	AC128707	79019027	3			AC073044	79181744		75367	16847	7455	99669
S/G/Y/R/B/O	NT_009551	AC130415	79138569	3	chr12	NT_009551	AC010951	79181744	1	7790	0	0	7790
S/G/Y/R/B/O	NT_009551	AC130415	79138569	3			AC018372	79181744		14774	5103	0	19877
S/G/Y/R/B/O	NT_009551	AC130415	79138569	3			AC041032	79181744		12564	0	0	12564
S/G/Y/R/B/O	NT_009551	AC010951	79181744	1
S/G/Y/R/B/O	NT_009551	AC010951	79181744	1	chr12	NT_009551	AC128707	79019027	3	49773	0	14739	64512
S/G/Y/R/B/O	NT_009551	AC010951	79181744	1			AC018372	79019027		106217	7760	0	113977
S/G/Y/R/B/O	NT_009551	AC010951	79181744	1			AC041032	79019027		70829	0	2995	73824
S/G/Y/R/B/O	NT_009551	AC010951	79181744	1			AC068994	79019027		33109	0	0	33109
S/G/Y/R/B/O	NT_009551	AC010951	79181744	1			AC073044	79019027		44774	6582	3608	54964