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  Chromosome 1 - Genetic Maps - Single Contig
 

Chromosome 1 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004487
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004487AL1099211690614303        
S/G/Y/R/B/O NT_004487AL1361701691953663        
S/G/Y/R/B/O NT_004487AL1219831693392873AFM278YE51196.501192.051 AL121983
S/G/Y/R/B/O NT_004487AL0312861694881433        
S/G/Y/R/B/O NT_004487AL0224001696279463ATA4E02  1192.051 AL022400
S/G/Y/R/B/O NT_004487AL0221711697391003AFM212XB101196.501191.521 AL022171
S/G/Y/R/B/O NT_004487AL0312781698018223        
S/G/Y/R/B/O NT_004487AL0210691698699553AFM157XE71196.501191.521 AL021069
S/G/Y/R/B/O NT_004487AL5911081699366403        
S/G/Y/R/B/O NT_004487AL1363771700124003        
S/G/Y/R/B/O NT_004487AL1616711700906091        
S/G/Y/R/B/O NT_004487AC0112201700918191        
S/G/Y/R/B/O NT_004487AP0028091700991551        
S/G/Y/R/B/O NT_004487Z991271702634503        
S/G/Y/R/B/O NT_004487Z992971703782393AFMA285ZD51197.001192.051 Z99297
S/G/Y/R/B/O NT_004487Z997151704635513        
S/G/Y/R/B/O NT_004487AL0086261705736893AFM185XD61197.001192.051 AL008626
S/G/Y/R/B/O NT_004487Z940571706460553        
S/G/Y/R/B/O NT_004487Z940551707260793        
S/G/Y/R/B/O NT_004487AL0219191708961883UT417  1192.051 AL021919
S/G/Y/R/B/O NT_004487AL0219191709023373AFMA152ZF51197.001192.051 AL021919
S/G/Y/R/B/O NT_004487AL1365301709990493        
S/G/Y/R/B/O NT_004487AL0232851710120083        
S/G/Y/R/B/O NT_004487AL1394111711192603        
S/G/Y/R/B/O NT_004487AL5133291712335643        
S/G/Y/R/B/O NT_004487AL5907231713129823        
S/G/Y/R/B/O NT_004487AL1627361714892053        
S/G/Y/R/B/O NT_004487AL3592651714997463        
S/G/Y/R/B/O NT_004487AL5910431717202663AFM115YE31197.001192.051AL672022, AC026961, AL591043, AL672022
S/G/Y/R/B/O NT_004487AL6720221717986602        
S/G/Y/R/B/O NT_004487AL0317341718023833        
S/G/Y/R/B/O NT_004487AL5962541720088643AFMB328YG51197.001192.051 AL596254
S/G/Y/R/B/O NT_004487AL1392821720514063AFMA203YB91197.001192.051 AC027620
S/G/Y/R/B/O NT_004487AL0312901721303063        
S/G/Y/R/B/O NT_004487AL0221451722500863        
S/G/Y/R/B/O NT_004487AL1369831723849933        
S/G/Y/R/B/O NT_004487AL0213981724248603        
S/G/Y/R/B/O NT_004487AL0221431726677503AFMB350XA51197.801193.761 AL022143
S/G/Y/R/B/O NT_004487AL0221441727266153AFM290YF91197.001192.051 AL022144
S/G/Y/R/B/O NT_004487AL0495561727629543        
S/G/Y/R/B/O NT_004487AL1220191728215123        
S/G/Y/R/B/O NT_004487AL3563771729319493        
S/G/Y/R/B/O NT_004487AL1361141730993353GATA12F01  1192.051 AL136114
S/G/Y/R/B/O NT_004487AL6628881731382933        
S/G/Y/R/B/O NT_004487AL1600071732311733AFMB352YB91197.801192.901 AL160007
S/G/Y/R/B/O NT_004487AL3562791732950483        
S/G/Y/R/B/O NT_004487AL3590751733217583        
S/G/Y/R/B/O NT_004487AL1602811734621213AFM142XC91198.601193.761 AL160281
S/G/Y/R/B/O NT_004487AL4996171736185573        
S/G/Y/R/B/O NT_004487AL3653571736598423        


  NT_004487 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004487AL0357021737661303        
S/G/Y/R/B/O NT_004487AL5130131738461013        
S/G/Y/R/B/O NT_004487AL1377961739211023        
S/G/Y/R/B/O NT_004487AL4491061740070283        
S/G/Y/R/B/O NT_004487AL1622551740796992        
S/G/Y/R/B/O NT_004487AL3555201741588503        
S/G/Y/R/B/O NT_004487AL1391321743164253        
S/G/Y/R/B/O NT_004487AL3591791744722913        
S/G/Y/R/B/O NT_004487AL5123261744742851        
S/G/Y/R/B/O NT_004487AL3558061746595383        
S/G/Y/R/B/O NT_004487AL4510751746673972        
S/G/Y/R/B/O NT_004487AL1602861748193333        
S/G/Y/R/B/O NT_004487AL6914331749727492        
S/G/Y/R/B/O NT_004487AL5909871750080773AFM150XH41199.201194.891 AL590987
S/G/Y/R/B/O NT_004487AL3598531750573733        
S/G/Y/R/B/O NT_004487AL3537081752284043        
S/G/Y/R/B/O NT_004487AL5906321753906253AFMB292ZB91199.201194.891 AL590632
S/G/Y/R/B/O NT_004487AL6454871753987583        
S/G/Y/R/B/O NT_004487AL3907181754846623AFMA061XC51199.701194.891 AC019260, AL139131, AL390718
S/G/Y/R/B/O NT_004487AL1391411755748753        
S/G/Y/R/B/O NT_004487AL4454691756866833        
S/G/Y/R/B/O NT_004487AL3583541758160873        
S/G/Y/R/B/O NT_004487AL3584341761066573AFMA143WD51199.701194.891 AL358434
S/G/Y/R/B/O NT_004487AL6038841761245223        
S/G/Y/R/B/O NT_004487AL5900851761265163        
S/G/Y/R/B/O NT_004487AL1624311762085733        
S/G/Y/R/B/O NT_004487AL3562671763455792        
S/G/Y/R/B/O NT_004487AL3583931765272863        
S/G/Y/R/B/O NT_004487AL5906241765754613        
S/G/Y/R/B/O NT_004487AL1600591767312402        
S/G/Y/R/B/O NT_004487AL3565001768831663        
S/G/Y/R/B/O NT_004487AL3592701769229073        
S/G/Y/R/B/O NT_004487AL5909981770119323        
S/G/Y/R/B/O NT_004487AL1617341771121283        
S/G/Y/R/B/O NT_004487AF2233911771363553        
S/G/Y/R/B/O NT_004487AC0268201772691471        
S/G/Y/R/B/O NT_004487AL3914771772752673        
S/G/Y/R/B/O NT_004487AL3554821774010173        
S/G/Y/R/B/O NT_004487AL3908561774734653        
S/G/Y/R/B/O NT_004487AL5134801776555713AFMA114WG11203.001198.301 AL513480
S/G/Y/R/B/O NT_004487AL5134801776830883AFM275XE11203.001198.301 AL513480
S/G/Y/R/B/O NT_004487AL1393441777184713AFMC025XH91203.001198.301 AL139344
S/G/Y/R/B/O NT_004487AL1387761778440623        
S/G/Y/R/B/O NT_004487AL3537781779426113        
S/G/Y/R/B/O NT_004487AL5133441780895583        
S/G/Y/R/B/O NT_004487AL3559991781590223        
S/G/Y/R/B/O NT_004487AL6628371782530053AFMA116YC51203.001198.301 AL662837
S/G/Y/R/B/O NT_004487AL4503041782737883        
S/G/Y/R/B/O NT_004487AL3549531784446093        
S/G/Y/R/B/O NT_004487AL3569811786066933        


  NT_004487 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004487AL4492231786557103        
S/G/Y/R/B/O NT_004487AL3598761788251783        
S/G/Y/R/B/O NT_004487AL3553871788453423        
S/G/Y/R/B/O NT_004487AL1378001788481863        
S/G/Y/R/B/O NT_004487AL1578991790339183        
S/G/Y/R/B/O NT_004487AL5904221790622582        
S/G/Y/R/B/O NT_004487AL5922991792584683        
S/G/Y/R/B/O NT_004487AL1579431793356783        
S/G/Y/R/B/O NT_004487AL1580111794056913        
S/G/Y/R/B/O NT_004487AL3546571795727393        
S/G/Y/R/B/O NT_004487AL4452281796307983        
S/G/Y/R/B/O NT_004487AL0786451797450503        
S/G/Y/R/B/O NT_004487AL3581521799491393        
S/G/Y/R/B/O NT_004487AL7138521800020041AFMA302YG51203.701199.301 AL713852
S/G/Y/R/B/O NT_004487AL0968191801176703GATA12F10  1200.301AL136086, AL096819, AL136086
S/G/Y/R/B/O NT_004487AL1360861801586223        
S/G/Y/R/B/O NT_004487AL1099561802035673        
S/G/Y/R/B/O NT_004487AL1098651802880413        
S/G/Y/R/B/O NT_004487AL1361331805692403AFM207VH81204.401200.301 AL136133
S/G/Y/R/B/O NT_004487AL3562731805752293        
S/G/Y/R/B/O NT_004487AL0786441806484203        
S/G/Y/R/B/O NT_004487AL1173471807765973        
S/G/Y/R/B/O NT_004487AL5133671808381953        
S/G/Y/R/B/O NT_004487AL1333831808971523AFMA348YD51205.101201.581 AC027182, AL133383
S/G/Y/R/B/O NT_004487AL1219961810449463        
S/G/Y/R/B/O NT_004487AL1357961811355333AFM078XH31205.101200.961 AC023275, AL135796
S/G/Y/R/B/O NT_004487AL1357961811589583AFM260XF11205.101200.961 AC023275, AL135796
S/G/Y/R/B/O NT_004487AL1357961812009693AFM046XH101205.101200.961 AC023275, AL135796
S/G/Y/R/B/O NT_004487AL1357961812139923AFM348TG11205.101200.961 AL135796
S/G/Y/R/B/O NT_004487AL1335151812892363        
S/G/Y/R/B/O NT_004487AL3918241813363053        
S/G/Y/R/B/O NT_004487AL1185121813681543UT7705  1200.961 AL118512
S/G/Y/R/B/O NT_004487AL1357971814463413        
S/G/Y/R/B/O NT_004487AL1335531814874603        
S/G/Y/R/B/O NT_004487AL5962201817447973GATA84H01  1200.961 AC074116, AF172081
S/G/Y/R/B/O NT_004487AL6630361818062813        
S/G/Y/R/B/O NT_004487AL0968031818154853        
S/G/Y/R/B/O NT_004487AL0491981819432093        
S/G/Y/R/B/O NT_004487AL0335331819778573        
S/G/Y/R/B/O NT_004487AL0222411820621693        
S/G/Y/R/B/O NT_004487AL0221471821631153        
S/G/Y/R/B/O NT_004487AL0497971822793963ATA23E12  1201.581 AL049797
S/G/Y/R/B/O NT_004487AL0497971823366193PLA2  12136.821 AL049797
S/G/Y/R/B/O NT_004487AL0497971823443373AFM095TA51205.601201.581 AL049797
S/G/Y/R/B/O NT_004487AL0968021824210063        
S/G/Y/R/B/O NT_004487AL1389281824834553        
S/G/Y/R/B/O NT_004487AL3910651826101943GATA23B04  1201.581 AL391065
S/G/Y/R/B/O NT_004487AL3917061827263903        
S/G/Y/R/B/O NT_004487AL3918131827853113        
S/G/Y/R/B/O NT_004487AL3575591829291593GATA7C01  1202.191 AL357559


  NT_004487 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004487AL3575591830141673GATA151B12  1202.191 AL357559
S/G/Y/R/B/O NT_004487AL6454741830570643        
S/G/Y/R/B/O NT_004487AL5897891831493593AFM164YG11205.601201.581 AL589789
S/G/Y/R/B/O NT_004487AL3563721832892233        
S/G/Y/R/B/O NT_004487AL1363721835251573AFM205XG11206.701202.731 AL136372
S/G/Y/R/B/O NT_004487AL5962111835302773        
S/G/Y/R/B/O NT_004487AL5924471835832173        
S/G/Y/R/B/O NT_004487AC0242991837241821        
S/G/Y/R/B/O NT_004487AC0229591838071381        
S/G/Y/R/B/O NT_004487AC0211361839559611        
S/G/Y/R/B/O NT_004487AC0156831840066861        
S/G/Y/R/B/O NT_004487 - AFM123YC51199.201194.320