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  Chromosome 1 - Genetic Maps - Single Contig
 

Chromosome 1 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004511
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004511AC023225289863241MFD217  167.221AC104336, AC023225, AC104336, AL513473
S/G/Y/R/B/O NT_004511AL390839288127251        
S/G/Y/R/B/O NT_004511AL603790299496521UT499  167.221AC021886, AC021886, AL139158, AL603790
S/G/Y/R/B/O NT_004511AC104336289383131        
S/G/Y/R/B/O NT_004511AL513220290439512        
S/G/Y/R/B/O NT_004511AL034379291634403        
S/G/Y/R/B/O NT_004511AL449284292736643        
S/G/Y/R/B/O NT_004511AL033524293293933        
S/G/Y/R/B/O NT_004511AL353604294310213        
S/G/Y/R/B/O NT_004511AL590127294924183        
S/G/Y/R/B/O NT_004511AL031430295679233AFM260ZG5166.60165.471AC027191, AC027191
S/G/Y/R/B/O NT_004511AL355386297100943AFMB013WE1166.60165.471 AL355386, AL360016
S/G/Y/R/B/O NT_004511AL355386297104803AFMA134ZC1166.60165.471AC027191, AC027191, AL355386
S/G/Y/R/B/O NT_004511AL355386297428883ATA4E01  165.471AC026542, AC026542, AL355386, AL359635, AL359966
S/G/Y/R/B/O NT_004511AL355386297837003AFM282ZD1166.60165.471AC026542, AC026542, AL355386, AL359635
S/G/Y/R/B/O NT_004511AL591883298223033        
S/G/Y/R/B/O NT_004511AC026542298300901        
S/G/Y/R/B/O NT_004511AL139419298391281        
S/G/Y/R/B/O NT_004511AC027191299240251        
S/G/Y/R/B/O NT_004511AC021886299513721        
S/G/Y/R/B/O NT_004511AC024688301412001        
S/G/Y/R/B/O NT_004511AL162259301504323        
S/G/Y/R/B/O NT_004511AL513479304074613GGAA24E02  170.411AL355865, AL355865
S/G/Y/R/B/O NT_004511AL355865304083723        
S/G/Y/R/B/O NT_004511AL592526304806413        
S/G/Y/R/B/O NT_004511AL139175304997523        
S/G/Y/R/B/O NT_004511AL354702306014703        
S/G/Y/R/B/O NT_004511AL139260308323903AFM214YC7171.50169.861AL714019, AL139260, AL714019
S/G/Y/R/B/O NT_004511AL714019308600301        
S/G/Y/R/B/O NT_004511AC015478308669051        
S/G/Y/R/B/O NT_004511AL645944311872531ATA20F08  156.741 AL645944
S/G/Y/R/B/O NT_004511AL606465309138011        
S/G/Y/R/B/O NT_004511AC092265310227543AFM281XG9  157.831AC015478, AC015478, AC092265
S/G/Y/R/B/O NT_004511AC092265310227543AFM281XG9157.20  1AC015478, AC015478, AC092265
S/G/Y/R/B/O NT_004511AL662906313089911AFM311VE1  156.741 AC027064
S/G/Y/R/B/O NT_004511AL662906313089911AFM311VE1157.50  1 AC027064
S/G/Y/R/B/O NT_004511AL137076314160063        
S/G/Y/R/B/O NT_004511AL109740315052653        
S/G/Y/R/B/O NT_004511AL021921315960703AFM240ZA9  156.741 AL021921, U95738
S/G/Y/R/B/O NT_004511AL021921315960703AFM240ZA9157.20  1 AL021921, U95738
S/G/Y/R/B/O NT_004511AL161638317518933AFM234TB6159.00157.831 AL161638
S/G/Y/R/B/O NT_004511AL591901318299633AFMB346YB5159.00157.831 AC026011
S/G/Y/R/B/O NT_004511AL137857319336072        
S/G/Y/R/B/O NT_004511AL137027320836493        
S/G/Y/R/B/O NT_004511AL445235322080431AFMA134XF9161.20160.011 AL445235, AL591412
S/G/Y/R/B/O NT_004511AL445235334215901UT2521  161.101 AL365174, AL445235
S/G/Y/R/B/O NT_004511AL355477322994923        
S/G/Y/R/B/O NT_004511AL356055323626793        
S/G/Y/R/B/O NT_004511AL442071324579663        
S/G/Y/R/B/O NT_004511AL137853325772633        


  NT_004511 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004511AL365277326891163        
S/G/Y/R/B/O NT_004511AL033526328030833        
S/G/Y/R/B/O NT_004511AL354919328600451AFM077XG1163.40162.201 AL139160, AL354919
S/G/Y/R/B/O NT_004511AL136115329674951UT5144  164.381 AL136115, AL139160, AP000933
S/G/Y/R/B/O NT_004511AP002344330331141        
S/G/Y/R/B/O NT_004511AL663070330354061        
S/G/Y/R/B/O NT_004511AC068629331908803        
S/G/Y/R/B/O NT_004511AC114488333697511AFMB319WB1162.90161.651AC068629, AC068629, AC114488
S/G/Y/R/B/O NT_004511AL356320334940481AFM199ZD2162.30161.101 AL356320, AL365174
S/G/Y/R/B/O NT_004511AC114495336380271        
S/G/Y/R/B/O NT_004511AL451070337334721        
S/G/Y/R/B/O NT_004511AC114494338853151        
S/G/Y/R/B/O NT_004511AL592073339905293        
S/G/Y/R/B/O NT_004511AL139249340570643        
S/G/Y/R/B/O NT_004511AL445248341098123        
S/G/Y/R/B/O NT_004511AL049795341817593        
S/G/Y/R/B/O NT_004511AC022307342974151        
S/G/Y/R/B/O NT_004511AL109945343507643        
S/G/Y/R/B/O NT_004511AC025388344325781        
S/G/Y/R/B/O NT_004511AL356986344579302        
S/G/Y/R/B/O NT_004511AL033529345540913        
S/G/Y/R/B/O NT_004511AL138800347012583        
S/G/Y/R/B/O NT_004511AC025422347031351        
S/G/Y/R/B/O NT_004511AC114489347035231        
S/G/Y/R/B/O NT_004511AC114493348250691        
S/G/Y/R/B/O NT_004511AC023038348456501        
S/G/Y/R/B/O NT_004511AL033527349766303GATA27F07  170.411 AL354888
S/G/Y/R/B/O NT_004511AL049824350937643        
S/G/Y/R/B/O NT_004511AL035404351276963AFMA083WF5171.50170.411 AL035404
S/G/Y/R/B/O NT_004511AC073835352678591        
S/G/Y/R/B/O NT_004511AL137791352883683        
S/G/Y/R/B/O NT_004511AL031602353546223        
S/G/Y/R/B/O NT_004511AL355864354274523        
S/G/Y/R/B/O NT_004511AL020995354684843AFMA244YD5162.90161.651 AL020995
S/G/Y/R/B/O NT_004511AL020995354826663AFM211XA1  161.101 AL020995
S/G/Y/R/B/O NT_004511AC022262355899391        
S/G/Y/R/B/O NT_004511AL662907356035402        
S/G/Y/R/B/O NT_004511AL513327357032931        
S/G/Y/R/B/O NT_004511AF161326357046931        
S/G/Y/R/B/O NT_004511AL138837358551241        
S/G/Y/R/B/O NT_004511AC115285359200541        
S/G/Y/R/B/O NT_004511AC025303359605521        
S/G/Y/R/B/O NT_004511AL355178360075193AFM094TB7163.40162.201AC115285, AC115285, AL355178
S/G/Y/R/B/O NT_004511AL161643361576413AFM311WB1164.00162.741 AL161643
S/G/Y/R/B/O NT_004511AL139140361897833        
S/G/Y/R/B/O NT_004511AL121980363397393AFM269XD5164.00162.741 AL121980
S/G/Y/R/B/O NT_004511AL662927363946161        
S/G/Y/R/B/O NT_004511AL607106364636293        
S/G/Y/R/B/O NT_004511AL596224365004063        
S/G/Y/R/B/O NT_004511AC022251366471321AFMA107WF9163.40162.741AC115286, AC115286, AL359498


  NT_004511 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004511AC115286366185851        
S/G/Y/R/B/O NT_004511AC012250366252441        
S/G/Y/R/B/O NT_004511AL360092367358923        
S/G/Y/R/B/O NT_004511AL008634369389553UT865  164.381AL365188, AL008634, AL365188
S/G/Y/R/B/O NT_004511AL365188369721731        
S/G/Y/R/B/O NT_004511AC099565371053461AFM063XB6163.90162.201AL356256, AC099565, AL356256
S/G/Y/R/B/O NT_004511AL356256371196472        
S/G/Y/R/B/O NT_004511AL121988372036853AFM205XD2165.60164.381 AL121988
S/G/Y/R/B/O NT_004511AL121988372695813ATA7G11  164.381AL356256, AL121988, AL356256
S/G/Y/R/B/O NT_004511AL122010372842923        
S/G/Y/R/B/O NT_004511AC114490373941111AFM329XD5165.60164.381 AC114490
S/G/Y/R/B/O NT_004511AC114490374215461GATA137F01  164.381 AC114490
S/G/Y/R/B/O NT_004511AL607089374750213        
S/G/Y/R/B/O NT_004511AL590434376640792AFM234XB2165.60164.381AC026026, AC061970, AC026026, AC061970, AL590434
S/G/Y/R/B/O NT_004511AC061970377527451        
S/G/Y/R/B/O NT_004511AL160000377550553        
S/G/Y/R/B/O NT_004511AL356362377957871        
S/G/Y/R/B/O NT_004511AC026026377963281        
S/G/Y/R/B/O NT_004511AL445211379199283        
S/G/Y/R/B/O NT_004511AC004865379248243        
S/G/Y/R/B/O NT_004511AL157951380429123        
S/G/Y/R/B/O NT_004511AL357035380727012        
S/G/Y/R/B/O NT_004511AL354864381923123AFMA190ZC5165.60164.381 AL354864
S/G/Y/R/B/O NT_004511AL359186382778111        
S/G/Y/R/B/O NT_004511AL139286383239063        
S/G/Y/R/B/O NT_004511AL138787384620833        
S/G/Y/R/B/O NT_004511AC012141385901111        
S/G/Y/R/B/O NT_004511AC114484386814211UT7270  164.381AL360074, AL360074
S/G/Y/R/B/O NT_004511AL360074386663771        
S/G/Y/R/B/O NT_004511AL591845387638741        
S/G/Y/R/B/O NT_004511AL358433388864531        
S/G/Y/R/B/O NT_004511AL445245389252331        
S/G/Y/R/B/O NT_004511AL080286390681543AFMB037XF1166.10164.921AL445245, AL080286, AL445245
S/G/Y/R/B/O NT_004511AL596257391702513        
S/G/Y/R/B/O NT_004511 - UT5176  169.860  
S/G/Y/R/B/O NT_004511 - AFMA132WA9  170.411AC093564, AC093564
S/G/Y/R/B/O NT_004511 - AFMA191ZE9171.50170.410