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  Chromosome 1 - Genetic Maps - Single Contig
 

Chromosome 1 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004668
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004668AC0272051584411321        
S/G/Y/R/B/O NT_004668AC0252221584466751        
S/G/Y/R/B/O NT_004668AL4996161584945721        
S/G/Y/R/B/O NT_004668AL5903851585056511        
S/G/Y/R/B/O NT_004668AC0739811585166751        
S/G/Y/R/B/O NT_004668AC0341291585237411        
S/G/Y/R/B/O NT_004668AC0162211585306341        
S/G/Y/R/B/O NT_004668AC0213701585924411        
S/G/Y/R/B/O NT_004668AL3595411586182821        
S/G/Y/R/B/O NT_004668AL4509951587769233        
S/G/Y/R/B/O NT_004668AL3918251587819323        
S/G/Y/R/B/O NT_004668AL5904081589915943        
S/G/Y/R/B/O NT_004668AL4501631592249293AFMA244WH5  1170.841 AL450163
S/G/Y/R/B/O NT_004668AL4501631592249293AFMA244WH51175.00  1 AL450163
S/G/Y/R/B/O NT_004668AL5127851593767323GGAA5F09  1170.841AC027205, AC034129, AC027205, AC034129, AC040905, AL512785
S/G/Y/R/B/O NT_004668AL3596991594144073        
S/G/Y/R/B/O NT_004668AL5963251595275133AFMB324ZD51176.801172.932AC040901, AC040901, AL596325
S/G/Y/R/B/O NT_004668AL4451971596690793        
S/G/Y/R/B/O NT_004668AL3920031599637253AFM344VA91179.201175.031AC031977, AC031977, AL392003
S/G/Y/R/B/O NT_004668AL5838501599739933        
S/G/Y/R/B/O NT_004668AC0319771601373221        
S/G/Y/R/B/O NT_004668AL4510631601756593        
S/G/Y/R/B/O NT_004668AL5924351602422553        
S/G/Y/R/B/O NT_004668AL6038411604019343        
S/G/Y/R/B/O NT_004668AL5133071605746483GGAA22G10  1175.621 AL358816, AL513307
S/G/Y/R/B/O NT_004668AL6631201606080953        
S/G/Y/R/B/O NT_004668AL1364571606241203        
S/G/Y/R/B/O NT_004668AL6631211607069953        
S/G/Y/R/B/O NT_004668AL3558621607421303UT2089  1175.621 AL355862
S/G/Y/R/B/O NT_004668AL3588751608255702        
S/G/Y/R/B/O NT_004668AL5962131609952053        
S/G/Y/R/B/O NT_004668AL3564281610229903        
S/G/Y/R/B/O NT_004668AL3575121611957293        
S/G/Y/R/B/O NT_004668AL5133641613777533        
S/G/Y/R/B/O NT_004668AL3571321614916693UT1398  1175.621 AL357132
S/G/Y/R/B/O NT_004668AL3592551615382113        
S/G/Y/R/B/O NT_004668AL3910011615570203        
S/G/Y/R/B/O NT_004668AL3575681617517863        
S/G/Y/R/B/O NT_004668AL3901191618211453        
S/G/Y/R/B/O NT_004668AL3600881621635883AFMA125ZE51181.701177.861 AC025391, AC027244, AL360088
S/G/Y/R/B/O NT_004668AL3907301621786403        
S/G/Y/R/B/O NT_004668AL5901121623219833AFM205XH21181.701177.861 AC027639, AL590112
S/G/Y/R/B/O NT_004668AL1600581624183143AFMA057ZE51181.701177.861 AC009625
S/G/Y/R/B/O NT_004668AL1600581624521903AFM057XF81183.301178.421 AC009625, AL160058
S/G/Y/R/B/O NT_004668AL1577141624808893        
S/G/Y/R/B/O NT_004668AL3564411625593463        
S/G/Y/R/B/O NT_004668AL4510741626969963UT591  1177.861 AL451074
S/G/Y/R/B/O NT_004668AL3581151628636883ATA38A05  1178.421 AL358115
S/G/Y/R/B/O NT_004668AL6064951629173433        
S/G/Y/R/B/O NT_004668AL6267871630681933AFMA247XD11182.801179.101 AL626787


  NT_004668 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004668AL5960871631061923        
S/G/Y/R/B/O NT_004668AL3901151632849103        
S/G/Y/R/B/O NT_004668AL5838041633854432        
S/G/Y/R/B/O NT_004668AL6119621635958973AFMA239YD11182.801178.421 AC015623, AL611962
S/G/Y/R/B/O NT_004668AL6119621636109343UT1230  1179.101 AC015623, AL611962
S/G/Y/R/B/O NT_004668AL3560051636333313        
S/G/Y/R/B/O NT_004668AL0086391637497563        
S/G/Y/R/B/O NT_004668AL0091821638566333        
S/G/Y/R/B/O NT_004668AL1588371639710743AFMB316ZB91183.301179.101 AL158837
S/G/Y/R/B/O NT_004668AL4510501642310273AFMA129ZF51183.301177.861 AL451050
S/G/Y/R/B/O NT_004668AL1369841642367173        
S/G/Y/R/B/O NT_004668AL3599621644043433        
S/G/Y/R/B/O NT_004668AL0317331645244723UT1089  1182.351 AL031733
S/G/Y/R/B/O NT_004668AL0317331645531973MFD147  1182.351 AL031733
S/G/Y/R/B/O NT_004668AL0317331646190693AFM063XG91186.401181.491 AL031733
S/G/Y/R/B/O NT_004668AL3565321646833773        
S/G/Y/R/B/O NT_004668Z999431647447453AFMB292XB11187.201182.351 Z99943
S/G/Y/R/B/O NT_004668Z999431648346923AFM212XF61187.201182.351 AC069147
S/G/Y/R/B/O NT_004668Z978761648361133        
S/G/Y/R/B/O NT_004668AL0312871649691833AFM238XF101187.201182.351 AC026140, AC069147, AL031287
S/G/Y/R/B/O NT_004668AL0335311650071043        
S/G/Y/R/B/O NT_004668AL0335321651075893AFMB359XF51188.501183.191 AL033532
S/G/Y/R/B/O NT_004668AL0213971651369733        
S/G/Y/R/B/O NT_004668AL0090511652693553AFMA197WG11188.501185.301 AL009051
S/G/Y/R/B/O NT_004668AL0221001653830253AFM217XE111187.201184.211 AL022100
S/G/Y/R/B/O NT_004668AL0237551654004853        
S/G/Y/R/B/O NT_004668AL1370751654880993        
S/G/Y/R/B/O NT_004668AL0317361654990853        
S/G/Y/R/B/O NT_004668AL3565731656464043        
S/G/Y/R/B/O NT_004668AL0497981656662493        
S/G/Y/R/B/O NT_004668AL0312751657409713        
S/G/Y/R/B/O NT_004668AL1359261658506923        
S/G/Y/R/B/O NT_004668AL5918621660091113        
S/G/Y/R/B/O NT_004668AL0317261660634343ATA9A02  1186.961 AL031726, AL390855
S/G/Y/R/B/O NT_004668AC0117321662582371        
S/G/Y/R/B/O NT_004668AC0253931663339801        
S/G/Y/R/B/O NT_004668AC0112211663399631        
S/G/Y/R/B/O NT_004668 - MFD67  1175.621AC021153, AC021153